Wall clock time and date at job start Mon Mar 30 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46900 * 109.47028 * 120.00101 * 2 1 3 11 11 C 1.46894 * 111.00164 * 275.00056 * 10 2 1 12 12 C 1.53008 * 109.46990 * 180.02562 * 11 10 2 13 13 C 1.53004 * 109.47021 * 299.99848 * 12 11 10 14 14 C 1.52995 * 109.47124 * 59.99878 * 12 11 10 15 15 C 1.50701 * 109.46929 * 180.02562 * 12 11 10 16 16 H 1.08005 * 119.99951 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99960 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99974 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99902 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47221 * 89.99862 * 19 17 15 21 21 H 1.48503 * 109.47121 * 209.99779 * 19 17 15 22 22 H 1.48496 * 109.47288 * 329.99666 * 19 17 15 23 23 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 24 24 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 25 25 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 27 27 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 28 28 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 1.00903 * 111.00322 * 151.04313 * 10 2 1 32 32 H 1.08993 * 109.47101 * 299.99790 * 11 10 2 33 33 H 1.08995 * 109.46955 * 60.00504 * 11 10 2 34 34 H 1.08997 * 109.47178 * 60.00285 * 13 12 11 35 35 H 1.08997 * 109.46845 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46907 * 299.99935 * 13 12 11 37 37 H 1.09003 * 109.47339 * 60.00015 * 14 12 11 38 38 H 1.08997 * 109.46975 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47302 * 299.99853 * 14 12 11 40 40 H 0.96997 * 119.99597 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0196 -0.6925 1.1994 11 6 2.0824 0.2225 2.3469 12 6 2.5962 -0.5331 3.5742 13 6 1.6472 -1.6895 3.8953 14 6 3.9935 -1.0853 3.2851 15 6 2.6600 0.4054 4.7515 16 1 2.3633 1.4375 4.6360 17 6 3.0971 -0.0534 5.9760 18 7 3.4578 -1.3102 6.1167 19 14 3.1755 1.1099 7.4355 20 1 1.8818 1.0780 8.1640 21 1 4.2679 0.6863 8.3479 22 1 3.4391 2.4900 6.9550 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6054 -0.2617 -2.1370 27 1 1.7516 -1.7715 -1.2057 28 1 4.0722 -2.3623 -0.2354 29 1 6.5316 -1.7991 -0.5770 30 1 6.9415 0.3381 -1.8822 31 1 2.9173 -1.1206 1.0288 32 1 2.7588 1.0460 2.1183 33 1 1.0870 0.6161 2.5525 34 1 1.6006 -2.3685 3.0439 35 1 2.0130 -2.2275 4.7699 36 1 0.6517 -1.2961 4.1013 37 1 4.6696 -0.2614 3.0563 38 1 4.3596 -1.6231 4.1595 39 1 3.9469 -1.7642 2.4337 40 1 3.7650 -1.6331 6.9782 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:33 Heat of formation + Delta-G solvation = 17.636054 kcal Electronic energy + Delta-G solvation = -18824.208255 eV Core-core repulsion = 16151.022203 eV Total energy + Delta-G solvation = -2673.186052 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.46965 -36.91037 -35.07350 -31.95380 -30.40644 -28.94549 -26.25902 -25.51589 -25.18031 -23.95621 -22.84011 -20.25758 -19.23594 -18.32693 -17.01924 -15.95949 -15.59397 -15.26036 -14.71007 -14.36000 -13.64214 -13.13820 -13.05130 -12.73650 -12.61215 -12.41291 -12.26182 -11.94600 -11.60001 -11.43459 -11.26573 -11.15451 -10.94720 -10.83973 -10.65982 -10.55473 -10.41696 -10.09942 -10.01496 -9.33455 -9.02402 -8.58297 -8.53410 -8.41728 -8.25382 -7.63131 -5.87821 -3.97790 1.06039 1.68930 2.04924 2.84071 3.33227 3.39965 3.43160 4.46326 4.75915 4.81821 5.10740 5.17199 5.35264 5.37620 5.54610 5.66600 5.74486 5.79472 5.95560 6.04907 6.21077 6.27511 6.37829 6.41238 6.45022 6.57247 6.59607 6.78342 6.95380 7.13212 7.22699 7.42677 7.52633 7.79716 7.80702 7.88581 8.08015 8.26412 8.39268 8.60543 9.03655 9.66894 11.12707 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.005297 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.108908 B = 5284.776501 C = 5832.774280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.038 0.962 4 C -0.052 4.052 5 C -0.168 4.168 6 C -0.139 4.139 7 C -0.125 4.125 8 C -0.219 4.219 9 S 0.080 5.920 10 N -0.683 5.683 11 C 0.077 3.923 12 C 0.069 3.931 13 C -0.118 4.118 14 C -0.129 4.129 15 C -0.505 4.505 16 H 0.051 0.949 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.340 0.660 32 H 0.010 0.990 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.082 0.918 39 H 0.009 0.991 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 0.468 -16.006 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.056 0.944 4 C -0.092 4.092 5 C -0.285 4.285 6 C -0.169 4.169 7 C -0.156 4.156 8 C -0.355 4.355 9 S 0.342 5.658 10 N -0.318 5.318 11 C -0.052 4.052 12 C 0.068 3.932 13 C -0.176 4.176 14 C -0.187 4.187 15 C -0.544 4.544 16 H 0.069 0.931 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.101 0.899 39 H 0.028 0.972 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.048 1.399 -16.503 16.562 hybrid contribution 1.404 0.049 1.474 2.036 sum 1.356 1.448 -15.029 15.160 Atomic orbital electron populations 1.21760 0.94597 1.02178 1.00888 1.21497 0.95676 0.95732 0.89734 0.94442 1.20438 0.87263 1.02928 0.98569 1.24562 0.99840 0.98835 1.05251 1.20229 0.92339 1.01726 1.02621 1.20204 0.97172 0.97665 1.00555 1.25527 1.00956 1.00944 1.08024 1.84141 0.97959 1.27872 1.55787 1.60753 1.33927 1.33624 1.03470 1.22158 0.98994 0.93091 0.90926 1.18086 0.91799 0.93157 0.90128 1.21630 0.97318 0.98400 1.00229 1.21799 0.98783 0.98318 0.99759 1.21120 1.43279 0.95863 0.94109 0.93092 1.24876 0.95301 0.94977 0.98398 1.69836 1.44746 1.13959 1.23864 0.86679 0.77583 0.81322 0.82869 1.20792 1.21344 1.20148 0.92325 0.93398 0.92050 0.90604 0.89142 0.83860 0.84268 0.82189 0.83839 0.97162 0.92659 0.96163 0.90814 0.96354 0.96374 0.89904 0.97230 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.41 37.16 0.35 -1.50 16 2 C 0.08 1.27 2.64 -67.71 -0.18 1.09 16 3 H 0.04 0.61 7.80 -51.93 -0.40 0.20 16 4 C -0.05 -0.66 5.31 -27.88 -0.15 -0.80 16 5 C -0.17 -2.23 5.39 -36.00 -0.19 -2.43 16 6 C -0.14 -1.89 8.54 -41.21 -0.35 -2.24 16 7 C -0.13 -1.59 10.18 -41.21 -0.42 -2.01 16 8 C -0.22 -2.62 11.23 29.04 0.33 -2.29 16 9 S 0.08 0.98 23.33 -107.50 -2.51 -1.53 16 10 N -0.68 -12.42 5.52 -106.73 -0.59 -13.01 16 11 C 0.08 1.66 4.38 -3.82 -0.02 1.64 16 12 C 0.07 1.70 0.57 -155.66 -0.09 1.61 16 13 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 14 C -0.13 -3.11 7.92 37.15 0.29 -2.81 16 15 C -0.50 -13.83 8.01 -34.44 -0.28 -14.11 16 16 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 17 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 18 N -0.89 -24.75 9.35 55.43 0.52 -24.23 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.14 1.91 7.69 -52.49 -0.40 1.50 16 29 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.34 6.16 3.88 -39.29 -0.15 6.01 16 32 H 0.01 0.23 8.05 -51.93 -0.42 -0.19 16 33 H 0.05 1.21 7.43 -51.93 -0.39 0.83 16 34 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 35 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -28.05 325.55 -9.63 -37.68 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.44 Total: 4.59 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -0.49 Total: -24.77 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.07 Total: -37.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.05 -9.63 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.317 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds