Wall clock time and date at job start Mon Mar 30 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46900 * 109.47028 * 120.00101 * 2 1 3 11 11 C 1.46894 * 111.00164 * 275.00056 * 10 2 1 12 12 C 1.53008 * 109.46990 * 180.02562 * 11 10 2 13 13 C 1.53004 * 109.47021 * 299.99848 * 12 11 10 14 14 C 1.52995 * 109.47124 * 59.99878 * 12 11 10 15 15 C 1.50701 * 109.46929 * 180.02562 * 12 11 10 16 16 H 1.08005 * 119.99951 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99960 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99974 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99902 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47221 * 89.99862 * 19 17 15 21 21 H 1.48503 * 109.47121 * 209.99779 * 19 17 15 22 22 H 1.48496 * 109.47288 * 329.99666 * 19 17 15 23 23 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 24 24 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 25 25 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 27 27 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 28 28 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 1.00903 * 111.00322 * 151.04313 * 10 2 1 32 32 H 1.08993 * 109.47101 * 299.99790 * 11 10 2 33 33 H 1.08995 * 109.46955 * 60.00504 * 11 10 2 34 34 H 1.08997 * 109.47178 * 60.00285 * 13 12 11 35 35 H 1.08997 * 109.46845 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46907 * 299.99935 * 13 12 11 37 37 H 1.09003 * 109.47339 * 60.00015 * 14 12 11 38 38 H 1.08997 * 109.46975 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47302 * 299.99853 * 14 12 11 40 40 H 0.96997 * 119.99597 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0196 -0.6925 1.1994 11 6 2.0824 0.2225 2.3469 12 6 2.5962 -0.5331 3.5742 13 6 1.6472 -1.6895 3.8953 14 6 3.9935 -1.0853 3.2851 15 6 2.6600 0.4054 4.7515 16 1 2.3633 1.4375 4.6360 17 6 3.0971 -0.0534 5.9760 18 7 3.4578 -1.3102 6.1167 19 14 3.1755 1.1099 7.4355 20 1 1.8818 1.0780 8.1640 21 1 4.2679 0.6863 8.3479 22 1 3.4391 2.4900 6.9550 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6054 -0.2617 -2.1370 27 1 1.7516 -1.7715 -1.2057 28 1 4.0722 -2.3623 -0.2354 29 1 6.5316 -1.7991 -0.5770 30 1 6.9415 0.3381 -1.8822 31 1 2.9173 -1.1206 1.0288 32 1 2.7588 1.0460 2.1183 33 1 1.0870 0.6161 2.5525 34 1 1.6006 -2.3685 3.0439 35 1 2.0130 -2.2275 4.7699 36 1 0.6517 -1.2961 4.1013 37 1 4.6696 -0.2614 3.0563 38 1 4.3596 -1.6231 4.1595 39 1 3.9469 -1.7642 2.4337 40 1 3.7650 -1.6331 6.9782 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:33 Heat of formation + Delta-G solvation = 3.599291 kcal Electronic energy + Delta-G solvation = -18824.816935 eV Core-core repulsion = 16151.022203 eV Total energy + Delta-G solvation = -2673.794732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.66693 -38.31741 -36.62655 -33.74682 -31.75438 -30.31978 -27.51737 -27.28139 -27.21294 -25.62643 -23.89938 -21.47585 -20.48717 -19.98201 -18.09475 -17.78079 -17.04601 -16.62285 -16.25120 -15.83575 -15.16220 -14.51950 -14.46734 -14.23918 -13.90230 -13.67645 -13.44561 -13.32500 -13.18558 -13.05406 -12.66763 -12.65771 -12.48606 -12.39276 -12.26540 -12.14780 -12.03610 -11.74767 -11.62571 -11.29033 -10.90517 -10.59294 -10.34262 -9.53609 -9.39077 -9.12430 -7.96643 -6.13393 0.08902 0.74155 1.09277 1.41383 1.43243 1.51647 1.85503 2.46189 3.25172 3.44371 3.78865 4.02796 4.25365 4.36034 4.41187 4.57764 4.59783 4.67459 4.76888 4.81499 4.87155 4.93531 4.95340 5.04896 5.15850 5.21114 5.25085 5.28261 5.40695 5.43607 5.48548 5.54505 5.60254 5.69924 5.77456 6.20132 6.28622 6.35711 6.51168 6.70502 6.95815 7.53909 9.01580 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.005297 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.108908 B = 5284.776501 C = 5832.774280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.027 0.973 4 C -0.045 4.045 5 C -0.183 4.183 6 C -0.152 4.152 7 C -0.142 4.142 8 C -0.219 4.219 9 S 0.086 5.914 10 N -0.683 5.683 11 C 0.093 3.907 12 C 0.060 3.940 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.527 4.527 16 H 0.041 0.959 17 C 0.024 3.976 18 N -0.902 5.902 19 Si 0.943 3.057 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.275 1.275 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.183 0.817 31 H 0.340 0.660 32 H -0.003 1.003 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 0.803 -17.199 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.028 4.028 3 H 0.045 0.955 4 C -0.084 4.084 5 C -0.300 4.300 6 C -0.182 4.182 7 C -0.173 4.173 8 C -0.354 4.354 9 S 0.349 5.651 10 N -0.317 5.317 11 C -0.036 4.036 12 C 0.059 3.941 13 C -0.161 4.161 14 C -0.172 4.172 15 C -0.566 4.566 16 H 0.060 0.940 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.770 3.230 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.200 1.200 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.170 0.830 30 H 0.201 0.799 31 H 0.162 0.838 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.105 1.733 -17.709 17.794 hybrid contribution 1.436 -0.053 1.802 2.305 sum 1.331 1.680 -15.908 16.052 Atomic orbital electron populations 1.21735 0.93332 1.02512 1.01429 1.21598 0.96593 0.95149 0.89418 0.95517 1.20397 0.86915 1.03151 0.97985 1.24729 1.00324 0.99273 1.05704 1.20385 0.93014 1.01933 1.02881 1.20420 0.97278 0.98380 1.01171 1.25882 1.01856 1.00516 1.07162 1.84087 0.98120 1.27436 1.55421 1.60715 1.33921 1.33128 1.03967 1.21798 0.97903 0.92729 0.91165 1.18141 0.92140 0.93009 0.90787 1.21451 0.96669 0.98362 0.99662 1.21601 0.98190 0.98027 0.99389 1.21424 1.43625 0.95981 0.95560 0.94030 1.25515 0.95091 0.96324 1.00613 1.69960 1.44883 1.15027 1.24283 0.85795 0.77622 0.79568 0.80029 1.20403 1.20920 1.19983 0.94113 0.90567 0.91788 0.88330 0.88544 0.84098 0.82987 0.79930 0.83811 0.98505 0.93354 0.94635 0.93279 0.97064 0.97128 0.92444 0.95049 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.41 71.98 0.68 -2.64 16 2 C 0.08 2.35 2.64 44.92 0.12 2.47 16 3 H 0.03 0.83 7.80 -2.39 -0.02 0.81 16 4 C -0.05 -1.03 5.31 29.85 0.16 -0.87 16 5 C -0.18 -4.58 5.39 24.59 0.13 -4.44 16 6 C -0.15 -3.94 8.54 21.22 0.18 -3.75 16 7 C -0.14 -3.40 10.18 21.22 0.22 -3.18 16 8 C -0.22 -4.82 11.23 66.72 0.75 -4.07 16 9 S 0.09 1.97 23.33 -56.49 -1.32 0.65 16 10 N -0.68 -24.12 5.52 -491.58 -2.71 -26.84 16 11 C 0.09 4.01 4.38 86.31 0.38 4.39 16 12 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 13 C -0.10 -5.12 8.09 71.98 0.58 -4.53 16 14 C -0.11 -5.51 7.92 71.98 0.57 -4.94 16 15 C -0.53 -29.12 8.01 25.60 0.21 -28.91 16 16 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 17 C 0.02 1.30 5.15 84.65 0.44 1.73 16 18 N -0.90 -50.82 9.35 21.45 0.20 -50.62 16 19 Si 0.94 43.91 29.54 68.60 2.03 45.93 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H 0.04 1.16 7.45 -2.39 -0.02 1.14 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.14 3.62 7.69 -2.91 -0.02 3.60 16 29 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.34 11.95 3.88 -89.69 -0.35 11.60 16 32 H 0.00 -0.15 8.05 -2.39 -0.02 -0.17 16 33 H 0.05 2.12 7.43 -2.39 -0.02 2.11 16 34 H 0.03 1.59 7.60 -2.39 -0.02 1.57 16 35 H 0.05 2.66 6.07 -2.39 -0.01 2.64 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 39 H 0.03 1.33 6.57 -2.39 -0.02 1.31 16 40 H 0.26 13.94 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -59.04 325.55 3.23 -55.81 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.66 Total: 20.88 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 4.38 Total: -45.83 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.51 Total: -77.45 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.65 kcal Total: -59.04 3.23 -55.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.407 kcal (2) G-P(sol) polarization free energy of solvation -59.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds