Wall clock time and date at job start Mon Mar 30 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.54267 * 110.03197 * 292.16506 * 17 16 14 19 19 C 1.54894 * 104.19494 * 217.10389 * 18 17 16 20 20 C 1.54887 * 102.74897 * 37.94495 * 19 18 17 21 21 C 1.53877 * 110.03511 * 174.99992 * 17 16 14 22 22 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 25 25 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 26 26 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 27 27 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 28 28 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 29 29 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 30 30 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 31 31 H 1.09003 * 110.01691 * 53.60998 * 17 16 14 32 32 H 1.08995 * 110.48694 * 335.78608 * 18 17 16 33 33 H 1.09002 * 110.48125 * 98.42778 * 18 17 16 34 34 H 1.09001 * 110.75353 * 279.63034 * 19 18 17 35 35 H 1.08999 * 110.91247 * 156.33540 * 19 18 17 36 36 H 1.08994 * 110.48496 * 203.37780 * 20 19 18 37 37 H 1.09001 * 110.59992 * 80.78816 * 20 19 18 38 38 H 1.08994 * 110.03389 * 238.57399 * 21 17 16 39 39 H 1.09001 * 110.02970 * 359.97438 * 21 17 16 40 40 H 1.09007 * 110.36818 * 265.28667 * 22 13 12 41 41 H 1.09006 * 110.37032 * 142.96345 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 6 2.5418 -8.7317 -1.8255 19 6 2.4521 -10.2003 -2.3095 20 6 0.9595 -10.3415 -2.6984 21 6 0.2102 -9.5240 -1.6259 22 6 2.2179 -3.6980 -0.1706 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1933 -1.9347 1.2973 25 1 -0.6088 -2.1850 -1.1167 26 1 0.8679 -2.1724 -2.1357 27 1 -0.6790 -4.5125 -1.0364 28 1 0.2993 -4.4051 -2.5249 29 1 -0.2895 -6.9685 -0.9041 30 1 0.6774 -6.8903 -2.3965 31 1 1.3610 -8.6608 -0.0025 32 1 2.6201 -8.0539 -2.6755 33 1 3.3905 -8.6025 -1.1538 34 1 2.7083 -10.8887 -1.5042 35 1 3.0940 -10.3646 -3.1750 36 1 0.6536 -11.3871 -2.6638 37 1 0.7804 -9.9251 -3.6896 38 1 -0.1326 -10.1815 -0.8271 39 1 -0.6384 -9.0078 -2.0747 40 1 3.0360 -3.4358 -0.8417 41 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:43 Heat of formation + Delta-G solvation = -109.322704 kcal Electronic energy + Delta-G solvation = -21017.096981 eV Core-core repulsion = 17895.652713 eV Total energy + Delta-G solvation = -3121.444268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70440 -38.14472 -36.88786 -34.25894 -32.23629 -31.52652 -29.68216 -28.66097 -28.31617 -26.12168 -24.51010 -22.19258 -20.72057 -19.94998 -19.46925 -18.61690 -17.21950 -16.65340 -15.75719 -15.42406 -14.97737 -14.91586 -14.61900 -14.07205 -13.75679 -13.33914 -13.18420 -12.99932 -12.24568 -12.18221 -11.84684 -11.64092 -11.35952 -11.31110 -11.21563 -11.04148 -10.96411 -10.89833 -10.72442 -10.63105 -10.56633 -10.47145 -10.36291 -10.03503 -9.41219 -9.21753 -8.70549 -8.22931 -7.94418 -6.30461 -4.38641 3.15895 3.17459 3.26708 3.31320 3.61985 4.25463 4.57662 4.62592 4.73283 4.95331 5.10465 5.22235 5.36633 5.44792 5.55666 5.61743 5.63544 5.65981 5.72007 5.82559 5.83701 5.86867 5.89949 6.02847 6.06614 6.09879 6.27328 6.32033 6.39625 6.44965 6.54039 6.67557 6.90075 6.99531 7.30037 7.34273 7.71671 8.00155 8.20055 8.64185 8.72623 9.29126 9.38303 10.76719 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047483 B = 0.003951 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.542561 B = 7085.861706 C = 7268.499353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.521 3.479 15 O -0.554 6.554 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.122 4.122 22 C 0.120 3.880 23 H 0.267 0.733 24 H 0.381 0.619 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -13.505 -6.310 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.206 3.794 10 O -0.391 6.391 11 C -0.174 4.174 12 C -0.024 4.024 13 N -0.342 5.342 14 C 0.310 3.690 15 O -0.433 6.433 16 C -0.169 4.169 17 C -0.095 4.095 18 C -0.150 4.150 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.002 4.002 23 H 0.077 0.923 24 H 0.230 0.770 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.237 -14.204 -5.913 15.436 hybrid contribution -0.125 1.606 -0.207 1.624 sum -1.362 -12.598 -6.120 14.072 Atomic orbital electron populations 1.69731 1.05951 1.27515 1.50243 1.24997 0.95027 0.99539 0.93483 0.86366 0.80204 0.82732 0.77712 1.19570 1.20821 1.20767 1.21501 0.93798 0.90184 1.51875 0.91671 1.19623 0.87002 0.90775 0.81981 1.86139 1.54157 1.53785 1.45055 1.23160 1.03168 0.89995 1.01103 1.22165 0.88642 0.96733 0.94829 1.48657 1.27394 1.05183 1.52940 1.20248 0.86287 0.81729 0.80785 1.90636 1.30415 1.78388 1.43900 1.21802 0.99355 0.94043 1.01669 1.21526 0.94752 0.92189 1.01028 1.22376 0.97811 0.95303 0.99512 1.22528 0.96091 0.97389 1.00462 1.22348 0.95562 0.99519 0.98732 1.22240 0.98045 0.97406 0.98276 1.22337 0.93780 0.86287 0.97753 0.92286 0.76965 0.89540 0.91437 0.92503 0.92979 0.89363 0.89414 0.90295 0.92137 0.90787 0.91729 0.91953 0.92090 0.91821 0.91853 0.91702 0.91210 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.77 10.73 55.43 0.59 -22.18 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.89 8.27 -34.44 -0.28 -14.17 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.93 0.88 -89.62 -0.08 5.86 16 10 O -0.58 -14.80 13.18 -35.23 -0.46 -15.27 16 11 C -0.14 -2.89 5.38 -24.90 -0.13 -3.02 16 12 C 0.10 1.78 6.49 -3.06 -0.02 1.76 16 13 N -0.61 -12.11 3.33 -170.52 -0.57 -12.68 16 14 C 0.52 9.76 7.63 -10.99 -0.08 9.67 16 15 O -0.55 -11.97 15.08 5.56 0.08 -11.89 16 16 C -0.13 -1.78 4.02 -27.89 -0.11 -1.89 16 17 C -0.08 -0.97 2.55 -89.50 -0.23 -1.20 16 18 C -0.11 -1.44 5.43 -25.07 -0.14 -1.58 16 19 C -0.13 -1.30 6.91 -24.74 -0.17 -1.47 16 20 C -0.12 -1.14 6.83 -25.07 -0.17 -1.32 16 21 C -0.12 -1.23 6.46 -25.61 -0.17 -1.39 16 22 C 0.12 2.71 6.08 -2.53 -0.02 2.70 16 23 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 24 H 0.38 9.62 7.51 45.56 0.34 9.96 16 25 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 26 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 31 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 32 H 0.06 0.79 7.76 -51.93 -0.40 0.38 16 33 H 0.07 1.09 7.66 -51.93 -0.40 0.69 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.07 1.53 8.03 -51.92 -0.42 1.12 16 41 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -27.91 324.76 -8.43 -36.34 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.25 Total: 10.06 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.69 Total: -4.31 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.03 Total: -34.85 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.38 Total: -27.15 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.91 -8.43 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.986 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds