Wall clock time and date at job start Mon Mar 30 2020 01:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.54267 * 110.03197 * 292.16506 * 17 16 14 19 19 C 1.54894 * 104.19494 * 217.10389 * 18 17 16 20 20 C 1.54887 * 102.74897 * 37.94495 * 19 18 17 21 21 C 1.53877 * 110.03511 * 174.99992 * 17 16 14 22 22 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 25 25 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 26 26 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 27 27 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 28 28 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 29 29 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 30 30 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 31 31 H 1.09003 * 110.01691 * 53.60998 * 17 16 14 32 32 H 1.08995 * 110.48694 * 335.78608 * 18 17 16 33 33 H 1.09002 * 110.48125 * 98.42778 * 18 17 16 34 34 H 1.09001 * 110.75353 * 279.63034 * 19 18 17 35 35 H 1.08999 * 110.91247 * 156.33540 * 19 18 17 36 36 H 1.08994 * 110.48496 * 203.37780 * 20 19 18 37 37 H 1.09001 * 110.59992 * 80.78816 * 20 19 18 38 38 H 1.08994 * 110.03389 * 238.57399 * 21 17 16 39 39 H 1.09001 * 110.02970 * 359.97438 * 21 17 16 40 40 H 1.09007 * 110.36818 * 265.28667 * 22 13 12 41 41 H 1.09006 * 110.37032 * 142.96345 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 6 2.5418 -8.7317 -1.8255 19 6 2.4521 -10.2003 -2.3095 20 6 0.9595 -10.3415 -2.6984 21 6 0.2102 -9.5240 -1.6259 22 6 2.2179 -3.6980 -0.1706 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1933 -1.9347 1.2973 25 1 -0.6088 -2.1850 -1.1167 26 1 0.8679 -2.1724 -2.1357 27 1 -0.6790 -4.5125 -1.0364 28 1 0.2993 -4.4051 -2.5249 29 1 -0.2895 -6.9685 -0.9041 30 1 0.6774 -6.8903 -2.3965 31 1 1.3610 -8.6608 -0.0025 32 1 2.6201 -8.0539 -2.6755 33 1 3.3905 -8.6025 -1.1538 34 1 2.7083 -10.8887 -1.5042 35 1 3.0940 -10.3646 -3.1750 36 1 0.6536 -11.3871 -2.6638 37 1 0.7804 -9.9251 -3.6896 38 1 -0.1326 -10.1815 -0.8271 39 1 -0.6384 -9.0078 -2.0747 40 1 3.0360 -3.4358 -0.8417 41 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:42 Heat of formation + Delta-G solvation = -126.637493 kcal Electronic energy + Delta-G solvation = -21017.847807 eV Core-core repulsion = 17895.652713 eV Total energy + Delta-G solvation = -3122.195093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16978 -39.45853 -38.31195 -36.05064 -34.22302 -32.68744 -31.29313 -30.01223 -29.49647 -27.59957 -26.02958 -23.75601 -21.68084 -21.51979 -20.65170 -20.01101 -19.11520 -18.10773 -16.99499 -16.98950 -16.79219 -16.24892 -15.81118 -15.63965 -15.19903 -14.78056 -14.46723 -14.15909 -13.87215 -13.72383 -13.46722 -13.26299 -13.03144 -12.90281 -12.64990 -12.46379 -12.26472 -12.08250 -11.90657 -11.87292 -11.79214 -11.64740 -11.49404 -11.26622 -11.25111 -10.78888 -10.61789 -10.15180 -9.54224 -8.24923 -6.40116 1.40179 1.44791 1.54586 1.69433 2.11482 2.40150 2.99963 3.53648 3.74135 3.76006 3.82861 3.95952 4.05781 4.32074 4.35509 4.39024 4.47600 4.57320 4.60376 4.62232 4.70752 4.77087 4.86671 4.89256 4.92797 4.99508 5.14488 5.15034 5.18636 5.27494 5.34096 5.41124 5.45816 5.53353 5.54775 5.56954 5.76963 6.07447 6.62739 6.69731 7.22008 7.30472 7.39186 8.80846 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047483 B = 0.003951 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.542561 B = 7085.861706 C = 7268.499353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.106 3.894 13 N -0.614 5.614 14 C 0.513 3.487 15 O -0.591 6.591 16 C -0.118 4.118 17 C -0.078 4.078 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.116 4.116 22 C 0.125 3.875 23 H 0.271 0.729 24 H 0.378 0.622 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 -14.437 -8.076 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.602 4.602 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.016 4.016 13 N -0.347 5.347 14 C 0.304 3.696 15 O -0.473 6.473 16 C -0.157 4.157 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.154 4.154 22 C 0.002 3.998 23 H 0.081 0.919 24 H 0.227 0.773 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.681 -15.150 -7.694 17.202 hybrid contribution 0.365 1.913 0.402 1.988 sum -2.316 -13.237 -7.292 15.289 Atomic orbital electron populations 1.69784 1.06553 1.28316 1.49711 1.25590 0.95863 1.01926 0.92983 0.85490 0.78771 0.79355 0.77867 1.20029 1.19898 1.20584 1.21700 0.93510 0.91754 1.53233 0.92967 1.19789 0.87640 0.90604 0.82680 1.86126 1.54240 1.53640 1.46169 1.22938 1.01645 0.92698 0.99178 1.22209 0.88486 0.93959 0.96940 1.48772 1.27557 1.05238 1.53139 1.21259 0.86484 0.81716 0.80156 1.90623 1.32292 1.78842 1.45502 1.21873 0.98599 0.92645 1.02629 1.21539 0.95693 0.92632 0.99800 1.22352 0.96847 0.97354 0.98789 1.22517 0.97559 0.95280 1.00795 1.22350 0.94098 1.00454 0.98774 1.22211 0.97629 0.96786 0.98753 1.22079 0.94027 0.87051 0.96653 0.91919 0.77291 0.90583 0.92038 0.90773 0.89229 0.87443 0.86817 0.92726 0.92345 0.93906 0.91753 0.90959 0.90479 0.90870 0.91217 0.90104 0.91356 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.78 10.73 21.45 0.23 -45.55 16 2 C 0.04 1.93 5.27 84.66 0.45 2.38 16 3 Si 0.96 41.04 29.54 68.60 2.03 43.06 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.56 -29.79 8.27 25.60 0.21 -29.58 16 8 H 0.05 2.81 7.79 -2.91 -0.02 2.78 16 9 C 0.23 11.36 0.88 -10.15 -0.01 11.35 16 10 O -0.59 -30.64 13.18 -148.98 -1.96 -32.61 16 11 C -0.13 -5.27 5.38 31.78 0.17 -5.10 16 12 C 0.11 3.55 6.49 86.73 0.56 4.12 16 13 N -0.61 -23.99 3.33 -811.79 -2.70 -26.69 16 14 C 0.51 18.90 7.63 87.66 0.67 19.57 16 15 O -0.59 -26.20 15.08 -3.03 -0.05 -26.25 16 16 C -0.12 -2.96 4.02 29.85 0.12 -2.84 16 17 C -0.08 -1.87 2.55 -10.07 -0.03 -1.90 16 18 C -0.12 -2.89 5.43 31.67 0.17 -2.72 16 19 C -0.12 -2.30 6.91 31.89 0.22 -2.07 16 20 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 21 C -0.12 -1.96 6.46 31.32 0.20 -1.76 16 22 C 0.12 5.78 6.08 86.85 0.53 6.31 16 23 H 0.27 13.02 8.31 -92.70 -0.77 12.24 16 24 H 0.38 19.41 7.51 -74.05 -0.56 18.86 16 25 H 0.08 3.33 7.54 -2.39 -0.02 3.31 16 26 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.11 2.32 8.00 -2.39 -0.02 2.30 16 31 H 0.05 1.57 7.92 -2.39 -0.02 1.55 16 32 H 0.06 1.45 7.76 -2.39 -0.02 1.43 16 33 H 0.04 1.31 7.66 -2.39 -0.02 1.29 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 40 H 0.07 3.11 8.03 -2.38 -0.02 3.09 16 41 H 0.04 2.11 8.04 -2.38 -0.02 2.09 16 Total: -1.00 -61.31 324.76 1.48 -59.83 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.45 Total: 32.01 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 3.49 Total: -3.81 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -2.47 Total: -72.24 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -2.01 Total: -58.85 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.31 1.48 -59.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.808 kcal (2) G-P(sol) polarization free energy of solvation -61.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds