Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34779 * 125.64696 * 181.01910 * 13 12 11 15 15 O 1.21277 * 119.99668 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00088 * 0.04337 * 14 13 12 17 17 C 1.52997 * 109.47275 * 179.97438 * 16 14 13 18 18 C 1.54270 * 110.03087 * 292.91128 * 17 16 14 19 19 C 1.54970 * 104.15795 * 217.13634 * 18 17 16 20 20 C 1.54885 * 102.77842 * 37.88691 * 19 18 17 21 21 C 1.53868 * 110.03489 * 175.69234 * 17 16 14 22 22 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 23 23 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 24 24 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 25 25 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 26 26 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 27 27 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 28 28 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 29 29 H 1.09002 * 109.47227 * 300.00139 * 16 14 13 30 30 H 1.09001 * 109.47331 * 60.00119 * 16 14 13 31 31 H 1.08996 * 110.01628 * 54.30040 * 17 16 14 32 32 H 1.08996 * 110.48460 * 335.78131 * 18 17 16 33 33 H 1.09001 * 110.48670 * 98.42529 * 18 17 16 34 34 H 1.09010 * 110.71490 * 279.57378 * 19 18 17 35 35 H 1.08997 * 110.76451 * 156.22894 * 19 18 17 36 36 H 1.09000 * 110.48658 * 203.40952 * 20 19 18 37 37 H 1.08993 * 110.48641 * 80.76549 * 20 19 18 38 38 H 1.09002 * 110.03531 * 238.56800 * 21 17 16 39 39 H 1.09004 * 110.03184 * 359.97438 * 21 17 16 40 40 H 1.09002 * 110.36865 * 217.03325 * 22 13 12 41 41 H 1.09001 * 110.37117 * 94.70643 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6925 -6.1230 0.4054 15 8 2.6001 -6.4774 -0.3168 16 6 0.8256 -7.1508 1.0857 17 6 1.2994 -8.5535 0.7000 18 6 1.0395 -8.8053 -0.7996 19 6 0.6233 -10.2966 -0.8670 20 6 -0.2305 -10.4722 0.4133 21 6 0.4927 -9.6130 1.4710 22 6 2.2259 -3.7031 -0.0012 23 1 -0.4850 0.8400 0.0004 24 1 -0.2788 -1.8355 -1.1497 25 1 1.0755 -2.3016 2.1726 26 1 -0.4922 -2.2572 1.3011 27 1 -0.5769 -4.5759 1.0886 28 1 0.5412 -4.5578 2.4790 29 1 0.8960 -7.0275 2.1665 30 1 -0.2097 -7.0183 0.7716 31 1 2.3619 -8.6616 0.9181 32 1 0.2322 -8.1675 -1.1592 33 1 1.9477 -8.6354 -1.3780 34 1 1.5003 -10.9434 -0.8383 35 1 0.0273 -10.4915 -1.7586 36 1 -0.2487 -11.5182 0.7191 37 1 -1.2431 -10.1037 0.2500 38 1 1.1638 -10.2358 2.0626 39 1 -0.2361 -9.1278 2.1203 40 1 2.5186 -3.9536 -1.0209 41 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = -109.317933 kcal Electronic energy + Delta-G solvation = -21046.132327 eV Core-core repulsion = 17924.688266 eV Total energy + Delta-G solvation = -3121.444061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70143 -38.12915 -36.87637 -34.27617 -32.15607 -31.52112 -29.72296 -28.63740 -28.31197 -26.12495 -24.50731 -22.20613 -20.69653 -19.93801 -19.43911 -18.61519 -17.24947 -16.69395 -15.71549 -15.30575 -15.11042 -14.99033 -14.45191 -14.03284 -13.87443 -13.31696 -13.18708 -12.87494 -12.38000 -12.01882 -11.92130 -11.59291 -11.35158 -11.34024 -11.20452 -11.03110 -10.93565 -10.89327 -10.70620 -10.61626 -10.56222 -10.48871 -10.35368 -10.05222 -9.44682 -9.22558 -8.69267 -8.22592 -7.94156 -6.31814 -4.39504 3.15916 3.18718 3.26111 3.29239 3.62068 4.24737 4.59187 4.63893 4.74760 4.93974 5.10862 5.23998 5.36258 5.46661 5.55269 5.62701 5.65363 5.67259 5.77978 5.81758 5.84251 5.86948 5.91129 6.02118 6.07114 6.11908 6.28802 6.32283 6.42372 6.46154 6.55483 6.67160 6.88235 6.99084 7.28721 7.31379 7.71822 7.98047 8.20038 8.62276 8.72723 9.29638 9.46520 10.75902 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047446 B = 0.003974 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.007496 B = 7044.639567 C = 7142.686429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.521 3.479 15 O -0.554 6.554 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.122 4.122 22 C 0.119 3.881 23 H 0.269 0.731 24 H 0.385 0.615 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -13.771 4.355 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.022 4.022 13 N -0.342 5.342 14 C 0.310 3.690 15 O -0.433 6.433 16 C -0.169 4.169 17 C -0.094 4.094 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.002 4.002 23 H 0.079 0.921 24 H 0.237 0.763 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.917 -14.453 3.856 15.081 hybrid contribution -0.041 1.598 0.310 1.628 sum -1.958 -12.855 4.166 13.654 Atomic orbital electron populations 1.69560 1.06007 1.27752 1.50495 1.24993 0.95019 0.99575 0.93422 0.86397 0.79792 0.82298 0.78389 1.20366 1.21028 1.19686 1.21496 0.93807 0.90254 1.51817 0.91646 1.19585 0.86052 0.90855 0.82744 1.86104 1.50961 1.52739 1.49653 1.23199 1.03019 0.90155 1.01440 1.22133 0.90171 0.97073 0.92830 1.48650 1.33050 1.05149 1.47327 1.20246 0.85008 0.81958 0.81832 1.90635 1.33133 1.80048 1.39490 1.21805 1.00112 0.93816 1.01157 1.21519 1.00223 0.92108 0.95597 1.22398 1.01792 0.95080 0.95798 1.22547 0.99295 0.97229 0.97414 1.22351 0.99036 0.99280 0.95511 1.22238 0.98870 0.97032 0.97789 1.22354 0.94459 0.85445 0.97990 0.92070 0.76284 0.91394 0.89916 0.92482 0.92964 0.89518 0.89268 0.90408 0.92007 0.90753 0.91761 0.91909 0.92087 0.91772 0.91905 0.91724 0.91202 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.97 10.79 55.43 0.60 -22.37 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.90 8.25 -34.44 -0.28 -14.18 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 6.00 0.89 -89.62 -0.08 5.92 16 10 O -0.58 -15.06 13.18 -35.23 -0.46 -15.52 16 11 C -0.14 -2.96 5.64 -24.90 -0.14 -3.10 16 12 C 0.10 1.81 6.49 -3.06 -0.02 1.79 16 13 N -0.61 -12.12 3.33 -170.52 -0.57 -12.69 16 14 C 0.52 9.77 7.63 -10.99 -0.08 9.68 16 15 O -0.55 -11.97 15.04 5.56 0.08 -11.89 16 16 C -0.13 -1.78 4.02 -27.89 -0.11 -1.89 16 17 C -0.08 -0.97 2.55 -89.50 -0.23 -1.20 16 18 C -0.11 -1.51 5.40 -25.03 -0.14 -1.65 16 19 C -0.13 -1.35 6.91 -24.70 -0.17 -1.52 16 20 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 21 C -0.12 -1.22 6.46 -25.61 -0.17 -1.39 16 22 C 0.12 2.70 6.08 -2.53 -0.02 2.68 16 23 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.39 9.98 6.93 45.56 0.32 10.30 16 25 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 26 H 0.08 1.83 7.85 -51.93 -0.41 1.42 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.16 8.02 -51.93 -0.42 0.74 16 31 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 32 H 0.06 0.87 7.77 -51.93 -0.40 0.47 16 33 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.07 1.69 8.04 -51.93 -0.42 1.27 16 41 H 0.07 1.51 8.01 -51.93 -0.42 1.10 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -27.96 324.74 -8.47 -36.43 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.29 Total: 10.58 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.70 Total: -4.46 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.03 Total: -35.06 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.38 Total: -27.41 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.96 -8.47 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.883 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds