Wall clock time and date at job start Mon Mar 30 2020 01:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34779 * 125.64696 * 181.01910 * 13 12 11 15 15 O 1.21277 * 119.99668 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00088 * 0.04337 * 14 13 12 17 17 C 1.52997 * 109.47275 * 179.97438 * 16 14 13 18 18 C 1.54270 * 110.03087 * 292.91128 * 17 16 14 19 19 C 1.54970 * 104.15795 * 217.13634 * 18 17 16 20 20 C 1.54885 * 102.77842 * 37.88691 * 19 18 17 21 21 C 1.53868 * 110.03489 * 175.69234 * 17 16 14 22 22 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 23 23 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 24 24 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 25 25 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 26 26 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 27 27 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 28 28 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 29 29 H 1.09002 * 109.47227 * 300.00139 * 16 14 13 30 30 H 1.09001 * 109.47331 * 60.00119 * 16 14 13 31 31 H 1.08996 * 110.01628 * 54.30040 * 17 16 14 32 32 H 1.08996 * 110.48460 * 335.78131 * 18 17 16 33 33 H 1.09001 * 110.48670 * 98.42529 * 18 17 16 34 34 H 1.09010 * 110.71490 * 279.57378 * 19 18 17 35 35 H 1.08997 * 110.76451 * 156.22894 * 19 18 17 36 36 H 1.09000 * 110.48658 * 203.40952 * 20 19 18 37 37 H 1.08993 * 110.48641 * 80.76549 * 20 19 18 38 38 H 1.09002 * 110.03531 * 238.56800 * 21 17 16 39 39 H 1.09004 * 110.03184 * 359.97438 * 21 17 16 40 40 H 1.09002 * 110.36865 * 217.03325 * 22 13 12 41 41 H 1.09001 * 110.37117 * 94.70643 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6925 -6.1230 0.4054 15 8 2.6001 -6.4774 -0.3168 16 6 0.8256 -7.1508 1.0857 17 6 1.2994 -8.5535 0.7000 18 6 1.0395 -8.8053 -0.7996 19 6 0.6233 -10.2966 -0.8670 20 6 -0.2305 -10.4722 0.4133 21 6 0.4927 -9.6130 1.4710 22 6 2.2259 -3.7031 -0.0012 23 1 -0.4850 0.8400 0.0004 24 1 -0.2788 -1.8355 -1.1497 25 1 1.0755 -2.3016 2.1726 26 1 -0.4922 -2.2572 1.3011 27 1 -0.5769 -4.5759 1.0886 28 1 0.5412 -4.5578 2.4790 29 1 0.8960 -7.0275 2.1665 30 1 -0.2097 -7.0183 0.7716 31 1 2.3619 -8.6616 0.9181 32 1 0.2322 -8.1675 -1.1592 33 1 1.9477 -8.6354 -1.3780 34 1 1.5003 -10.9434 -0.8383 35 1 0.0273 -10.4915 -1.7586 36 1 -0.2487 -11.5182 0.7191 37 1 -1.2431 -10.1037 0.2500 38 1 1.1638 -10.2358 2.0626 39 1 -0.2361 -9.1278 2.1203 40 1 2.5186 -3.9536 -1.0209 41 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:45 Heat of formation + Delta-G solvation = -126.640118 kcal Electronic energy + Delta-G solvation = -21046.883473 eV Core-core repulsion = 17924.688266 eV Total energy + Delta-G solvation = -3122.195207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16908 -39.45511 -38.30865 -36.07706 -34.14954 -32.69659 -31.33305 -30.00972 -29.49807 -27.61022 -26.03095 -23.76750 -21.68861 -21.49995 -20.64500 -20.00951 -19.16155 -18.12894 -17.07708 -16.93242 -16.64479 -16.38657 -15.81883 -15.53088 -15.25110 -14.86215 -14.33235 -14.15282 -13.94064 -13.62998 -13.55412 -13.21675 -13.05506 -12.91602 -12.63808 -12.47195 -12.26490 -12.09316 -11.90923 -11.87665 -11.81381 -11.64315 -11.50820 -11.31044 -11.24737 -10.78416 -10.61535 -10.15700 -9.54034 -8.26378 -6.41062 1.41570 1.44762 1.53397 1.69479 2.11658 2.39742 2.98561 3.54229 3.73523 3.77942 3.82757 3.94992 4.05591 4.31947 4.35262 4.40404 4.45646 4.57476 4.60473 4.61730 4.70394 4.76249 4.86661 4.89510 4.92813 4.97889 5.13642 5.14557 5.18494 5.26978 5.33740 5.40479 5.43919 5.52103 5.53400 5.56496 5.76443 6.04879 6.61398 6.69675 7.22120 7.30478 7.44480 8.80013 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047446 B = 0.003974 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.007496 B = 7044.639567 C = 7142.686429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.036 3.964 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.130 4.130 12 C 0.107 3.893 13 N -0.615 5.615 14 C 0.513 3.487 15 O -0.591 6.591 16 C -0.118 4.118 17 C -0.076 4.076 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.115 4.115 22 C 0.124 3.876 23 H 0.273 0.727 24 H 0.381 0.619 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -14.868 6.178 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.602 4.602 8 H 0.074 0.926 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.169 4.169 12 C -0.015 4.015 13 N -0.347 5.347 14 C 0.304 3.696 15 O -0.472 6.472 16 C -0.158 4.158 17 C -0.095 4.095 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.152 4.152 22 C 0.001 3.999 23 H 0.082 0.918 24 H 0.232 0.768 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.126 -15.566 5.697 16.868 hybrid contribution 0.369 1.955 -0.332 2.017 sum -2.758 -13.611 5.365 14.888 Atomic orbital electron populations 1.69617 1.06690 1.28527 1.50094 1.25616 0.95853 1.02075 0.92938 0.85505 0.78758 0.78933 0.78097 1.20605 1.20130 1.19575 1.21725 0.93656 0.91748 1.53038 0.92648 1.19784 0.86419 0.90792 0.83701 1.86090 1.51142 1.52513 1.50884 1.22989 1.01687 0.92866 0.99376 1.22184 0.90214 0.94380 0.94675 1.48770 1.33256 1.05107 1.47600 1.21265 0.85001 0.82067 0.81298 1.90622 1.34981 1.80500 1.41133 1.21877 0.99470 0.92219 1.02217 1.21536 0.99855 0.92675 0.95448 1.22378 0.99918 0.97163 0.96121 1.22537 0.99870 0.94974 0.98770 1.22358 0.98797 1.00358 0.94269 1.22208 0.99001 0.96248 0.97778 1.22099 0.94707 0.86348 0.96743 0.91752 0.76751 0.91638 0.90998 0.90938 0.89023 0.86584 0.87666 0.92140 0.93116 0.93926 0.91435 0.91300 0.90263 0.91217 0.90789 0.90072 0.94057 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.44 10.79 21.45 0.23 -46.20 16 2 C 0.04 1.84 5.30 84.65 0.45 2.29 16 3 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.56 -29.75 8.25 25.60 0.21 -29.54 16 8 H 0.06 2.94 7.77 -2.91 -0.02 2.92 16 9 C 0.23 11.44 0.89 -10.15 -0.01 11.43 16 10 O -0.60 -31.36 13.18 -148.98 -1.96 -33.32 16 11 C -0.13 -5.44 5.64 31.78 0.18 -5.26 16 12 C 0.11 3.60 6.49 86.73 0.56 4.16 16 13 N -0.61 -24.03 3.33 -811.79 -2.70 -26.73 16 14 C 0.51 18.91 7.63 87.66 0.67 19.58 16 15 O -0.59 -26.20 15.04 -3.02 -0.05 -26.25 16 16 C -0.12 -2.97 4.02 29.85 0.12 -2.85 16 17 C -0.08 -1.82 2.55 -10.07 -0.03 -1.85 16 18 C -0.12 -3.14 5.40 31.70 0.17 -2.96 16 19 C -0.12 -2.43 6.91 31.91 0.22 -2.21 16 20 C -0.12 -1.88 6.83 31.67 0.22 -1.67 16 21 C -0.11 -1.90 6.46 31.32 0.20 -1.70 16 22 C 0.12 5.75 6.08 86.86 0.53 6.28 16 23 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 24 H 0.38 20.16 6.93 -74.05 -0.51 19.65 16 25 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 26 H 0.07 3.14 7.85 -2.39 -0.02 3.12 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.11 2.37 8.02 -2.39 -0.02 2.35 16 31 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 32 H 0.05 1.42 7.77 -2.39 -0.02 1.41 16 33 H 0.04 1.37 7.63 -2.39 -0.02 1.35 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.12 7.67 -2.39 -0.02 1.10 16 40 H 0.04 2.10 8.04 -2.39 -0.02 2.08 16 41 H 0.07 3.13 8.01 -2.39 -0.02 3.11 16 Total: -1.00 -61.69 324.74 1.53 -60.16 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.49 Total: 33.59 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 3.49 Total: -4.31 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.47 Total: -72.93 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -2.01 Total: -59.57 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.69 1.53 -60.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.485 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds