Wall clock time and date at job start Mon Mar 30 2020 01:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48492 * 109.47424 * 264.75507 * 3 2 1 5 5 H 1.48507 * 109.47330 * 24.75556 * 3 2 1 6 6 H 1.48501 * 109.47218 * 144.75063 * 3 2 1 7 7 C 1.37873 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00405 * 4.91946 * 7 2 1 9 9 C 1.50698 * 119.99831 * 184.92208 * 7 2 1 10 10 O 1.42907 * 110.64363 * 61.78650 * 9 7 2 11 11 C 1.55159 * 110.87503 * 185.03542 * 9 7 2 12 12 C 1.54911 * 101.58491 * 153.93477 * 11 9 7 13 13 N 1.47426 * 104.83215 * 322.99346 * 12 11 9 14 14 C 1.34774 * 125.64916 * 204.08969 * 13 12 11 15 15 O 1.21276 * 120.00218 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99570 * 0.04425 * 14 13 12 17 17 C 1.52997 * 109.47246 * 299.99238 * 16 14 13 18 18 C 1.53007 * 109.47094 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46737 * 60.00528 * 18 17 16 20 20 C 1.52997 * 109.47264 * 299.99670 * 19 18 17 21 21 C 1.52994 * 109.47157 * 60.00295 * 20 19 18 22 22 C 1.47023 * 108.70442 * 24.12521 * 13 12 11 23 23 H 0.96994 * 119.99903 * 359.97438 * 1 2 3 24 24 H 0.96704 * 113.99809 * 56.85639 * 10 9 7 25 25 H 1.09001 * 111.00356 * 272.00744 * 11 9 7 26 26 H 1.09004 * 111.00104 * 35.85879 * 11 9 7 27 27 H 1.08994 * 110.36821 * 204.15492 * 12 11 9 28 28 H 1.09001 * 110.45466 * 81.87484 * 12 11 9 29 29 H 1.09005 * 109.47735 * 60.00183 * 16 14 13 30 30 H 1.08994 * 109.47689 * 300.00554 * 17 16 14 31 31 H 1.09004 * 109.46652 * 60.00862 * 17 16 14 32 32 H 1.09000 * 109.46984 * 300.00423 * 18 17 16 33 33 H 1.09001 * 109.46542 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.46852 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47470 * 60.00192 * 19 18 17 36 36 H 1.09003 * 109.46872 * 300.00341 * 20 19 18 37 37 H 1.08998 * 109.47511 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47429 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47463 * 59.99905 * 21 20 19 40 40 H 1.08999 * 109.88534 * 239.52960 * 22 13 12 41 41 H 1.09004 * 109.87983 * 118.35611 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3941 5 1 1.3955 2.6822 0.5863 6 1 3.4868 1.4749 0.8080 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0811 9 6 3.5074 -1.1964 0.1114 10 8 3.9212 -0.6167 1.3503 11 6 4.0705 -2.6346 -0.0368 12 6 5.4989 -2.3561 -0.5677 13 7 5.3472 -1.2013 -1.4715 14 6 6.1741 -0.8852 -2.4877 15 8 5.9513 0.0931 -3.1690 16 6 7.3755 -1.7476 -2.7776 17 6 8.2906 -1.7762 -1.5518 18 6 9.5106 -2.6513 -1.8464 19 6 10.2749 -2.0753 -3.0401 20 6 9.3599 -2.0467 -4.2660 21 6 8.1399 -1.1717 -3.9714 22 6 4.1449 -0.4511 -1.0801 23 1 -0.4850 0.8400 0.0004 24 1 3.5481 -1.0488 2.1309 25 1 4.1041 -3.1423 0.9271 26 1 3.4903 -3.2088 -0.7592 27 1 5.8750 -3.2199 -1.1158 28 1 6.1695 -2.1083 0.2551 29 1 7.0478 -2.7609 -3.0102 30 1 8.6182 -0.7630 -1.3192 31 1 7.7458 -2.1861 -0.7013 32 1 9.1832 -3.6646 -2.0792 33 1 10.1622 -2.6719 -0.9729 34 1 11.1444 -2.6985 -3.2497 35 1 10.6023 -1.0620 -2.8073 36 1 9.0326 -3.0600 -4.4987 37 1 9.9046 -1.6368 -5.1165 38 1 7.4882 -1.1509 -4.8449 39 1 8.4672 -0.1584 -3.7386 40 1 3.4429 -0.4149 -1.9131 41 1 4.4202 0.5602 -0.7803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:30 Heat of formation + Delta-G solvation = -98.438248 kcal Electronic energy + Delta-G solvation = -21643.734902 eV Core-core repulsion = 18522.762620 eV Total energy + Delta-G solvation = -3120.972282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16058 -38.21269 -37.02364 -34.60167 -32.45073 -31.42573 -30.80748 -29.91676 -28.52326 -25.30164 -23.59022 -22.57586 -22.29781 -20.05611 -19.76466 -18.94786 -17.29610 -16.74650 -15.86724 -15.35972 -15.19187 -14.79073 -14.34767 -14.23876 -14.05944 -13.51078 -13.32541 -12.92158 -12.73331 -12.45260 -12.32271 -12.15548 -11.93589 -11.80159 -11.46323 -11.25954 -11.20205 -10.93125 -10.70751 -10.64990 -10.47560 -10.28967 -10.21497 -10.07263 -9.33047 -9.06787 -8.75256 -8.48607 -8.10143 -6.25168 -4.37668 3.00795 3.31027 3.40628 3.51440 3.61025 4.40681 4.54385 4.59915 4.64721 5.00994 5.06421 5.10145 5.13139 5.18461 5.27355 5.32550 5.37171 5.41145 5.50913 5.59444 5.66175 5.75661 5.90036 5.93932 5.97609 6.00482 6.07563 6.09297 6.15295 6.26231 6.36690 6.47962 6.54365 6.63662 6.77242 7.04584 7.45461 8.01137 8.16051 8.57670 8.70935 8.88080 9.38007 10.84962 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033108 B = 0.005451 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.512752 B = 5135.375213 C = 5485.317845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.091 3.909 3 Si 0.863 3.137 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.229 1.229 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.216 3.784 10 O -0.574 6.574 11 C -0.146 4.146 12 C 0.102 3.898 13 N -0.610 5.610 14 C 0.523 3.477 15 O -0.550 6.550 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.099 4.099 22 C 0.111 3.889 23 H 0.268 0.732 24 H 0.367 0.633 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.790 -7.255 -2.531 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.115 4.115 3 Si 0.690 3.310 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.152 1.152 7 C -0.591 4.591 8 H 0.099 0.901 9 C 0.175 3.825 10 O -0.381 6.381 11 C -0.185 4.185 12 C -0.021 4.021 13 N -0.343 5.343 14 C 0.312 3.688 15 O -0.428 6.428 16 C -0.121 4.121 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.137 4.137 22 C -0.011 4.011 23 H 0.078 0.922 24 H 0.214 0.786 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.886 -6.211 -3.357 19.229 hybrid contribution -0.161 0.499 0.315 0.612 sum 17.725 -5.712 -3.042 18.870 Atomic orbital electron populations 1.69914 1.06606 1.27736 1.47729 1.24964 0.94612 0.99578 0.92314 0.87238 0.81785 0.82512 0.79472 1.20457 1.22208 1.15194 1.21212 0.88347 0.95203 1.54336 0.90108 1.19951 0.93541 0.87221 0.81745 1.86482 1.74452 1.61169 1.15990 1.23331 0.93893 0.99916 1.01314 1.22412 0.98973 0.87904 0.92805 1.48668 1.26622 1.28316 1.30665 1.20325 0.83476 0.85724 0.79296 1.90670 1.74307 1.28800 1.49050 1.21273 0.93513 0.99872 0.97457 1.21684 0.95983 1.01124 0.96875 1.21518 0.96580 0.99116 0.98117 1.21565 0.97890 1.01216 0.95218 1.21553 0.96280 1.00124 0.97648 1.21338 0.96028 0.99377 0.96941 1.22596 0.85149 0.95419 0.97929 0.92233 0.78584 0.90574 0.90271 0.91551 0.91431 0.88887 0.91557 0.90585 0.91829 0.91785 0.92160 0.91978 0.92003 0.91855 0.91290 0.91298 0.89983 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 3 Si 0.86 22.03 23.98 -169.99 -4.08 17.96 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.23 -5.74 5.36 56.52 0.30 -5.43 16 7 C -0.55 -14.68 8.70 -34.44 -0.30 -14.98 16 8 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 9 C 0.22 4.78 0.69 -89.93 -0.06 4.72 16 10 O -0.57 -12.34 10.56 -35.23 -0.37 -12.72 16 11 C -0.15 -2.58 6.23 -24.58 -0.15 -2.73 16 12 C 0.10 1.58 5.13 -2.53 -0.01 1.57 16 13 N -0.61 -11.74 3.32 -170.52 -0.57 -12.31 16 14 C 0.52 9.79 7.21 -10.99 -0.08 9.71 16 15 O -0.55 -12.43 16.31 5.56 0.09 -12.34 16 16 C -0.10 -1.34 1.88 -91.77 -0.17 -1.51 16 17 C -0.12 -1.37 5.01 -26.73 -0.13 -1.50 16 18 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 19 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 20 C -0.12 -1.12 5.92 -26.74 -0.16 -1.28 16 21 C -0.10 -1.24 4.49 -26.73 -0.12 -1.36 16 22 C 0.11 2.56 4.37 -3.06 -0.01 2.54 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.37 6.69 9.07 45.56 0.41 7.10 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 27 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 28 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 29 H 0.09 1.11 7.85 -51.93 -0.41 0.71 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.86 4.99 -51.93 -0.26 0.60 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.08 2.07 7.61 -51.93 -0.40 1.67 16 41 H 0.06 1.49 5.59 -51.93 -0.29 1.19 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -32.16 309.90 -7.08 -39.24 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.98 Total: 5.76 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.62 Total: -4.76 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.21 Total: -37.83 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.28 Total: -25.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.08 Total: 17.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.16 -7.08 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.194 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds