Wall clock time and date at job start Mon Mar 30 2020 01:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48492 * 109.47424 * 264.75507 * 3 2 1 5 5 H 1.48507 * 109.47330 * 24.75556 * 3 2 1 6 6 H 1.48501 * 109.47218 * 144.75063 * 3 2 1 7 7 C 1.37873 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00405 * 4.91946 * 7 2 1 9 9 C 1.50698 * 119.99831 * 184.92208 * 7 2 1 10 10 O 1.42907 * 110.64363 * 61.78650 * 9 7 2 11 11 C 1.55159 * 110.87503 * 185.03542 * 9 7 2 12 12 C 1.54911 * 101.58491 * 153.93477 * 11 9 7 13 13 N 1.47426 * 104.83215 * 322.99346 * 12 11 9 14 14 C 1.34774 * 125.64916 * 204.08969 * 13 12 11 15 15 O 1.21276 * 120.00218 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99570 * 0.04425 * 14 13 12 17 17 C 1.52997 * 109.47246 * 299.99238 * 16 14 13 18 18 C 1.53007 * 109.47094 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46737 * 60.00528 * 18 17 16 20 20 C 1.52997 * 109.47264 * 299.99670 * 19 18 17 21 21 C 1.52994 * 109.47157 * 60.00295 * 20 19 18 22 22 C 1.47023 * 108.70442 * 24.12521 * 13 12 11 23 23 H 0.96994 * 119.99903 * 359.97438 * 1 2 3 24 24 H 0.96704 * 113.99809 * 56.85639 * 10 9 7 25 25 H 1.09001 * 111.00356 * 272.00744 * 11 9 7 26 26 H 1.09004 * 111.00104 * 35.85879 * 11 9 7 27 27 H 1.08994 * 110.36821 * 204.15492 * 12 11 9 28 28 H 1.09001 * 110.45466 * 81.87484 * 12 11 9 29 29 H 1.09005 * 109.47735 * 60.00183 * 16 14 13 30 30 H 1.08994 * 109.47689 * 300.00554 * 17 16 14 31 31 H 1.09004 * 109.46652 * 60.00862 * 17 16 14 32 32 H 1.09000 * 109.46984 * 300.00423 * 18 17 16 33 33 H 1.09001 * 109.46542 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.46852 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47470 * 60.00192 * 19 18 17 36 36 H 1.09003 * 109.46872 * 300.00341 * 20 19 18 37 37 H 1.08998 * 109.47511 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47429 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47463 * 59.99905 * 21 20 19 40 40 H 1.08999 * 109.88534 * 239.52960 * 22 13 12 41 41 H 1.09004 * 109.87983 * 118.35611 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3941 5 1 1.3955 2.6822 0.5863 6 1 3.4868 1.4749 0.8080 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0811 9 6 3.5074 -1.1964 0.1114 10 8 3.9212 -0.6167 1.3503 11 6 4.0705 -2.6346 -0.0368 12 6 5.4989 -2.3561 -0.5677 13 7 5.3472 -1.2013 -1.4715 14 6 6.1741 -0.8852 -2.4877 15 8 5.9513 0.0931 -3.1690 16 6 7.3755 -1.7476 -2.7776 17 6 8.2906 -1.7762 -1.5518 18 6 9.5106 -2.6513 -1.8464 19 6 10.2749 -2.0753 -3.0401 20 6 9.3599 -2.0467 -4.2660 21 6 8.1399 -1.1717 -3.9714 22 6 4.1449 -0.4511 -1.0801 23 1 -0.4850 0.8400 0.0004 24 1 3.5481 -1.0488 2.1309 25 1 4.1041 -3.1423 0.9271 26 1 3.4903 -3.2088 -0.7592 27 1 5.8750 -3.2199 -1.1158 28 1 6.1695 -2.1083 0.2551 29 1 7.0478 -2.7609 -3.0102 30 1 8.6182 -0.7630 -1.3192 31 1 7.7458 -2.1861 -0.7013 32 1 9.1832 -3.6646 -2.0792 33 1 10.1622 -2.6719 -0.9729 34 1 11.1444 -2.6985 -3.2497 35 1 10.6023 -1.0620 -2.8073 36 1 9.0326 -3.0600 -4.4987 37 1 9.9046 -1.6368 -5.1165 38 1 7.4882 -1.1509 -4.8449 39 1 8.4672 -0.1584 -3.7386 40 1 3.4429 -0.4149 -1.9131 41 1 4.4202 0.5602 -0.7803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:29 Heat of formation + Delta-G solvation = -122.404643 kcal Electronic energy + Delta-G solvation = -21644.774163 eV Core-core repulsion = 18522.762620 eV Total energy + Delta-G solvation = -3122.011543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54669 -39.58912 -38.30474 -36.25214 -34.56964 -32.59197 -31.65001 -31.32353 -30.17279 -27.11010 -24.97415 -23.52624 -23.41044 -21.55794 -20.90014 -20.30353 -19.25692 -18.16093 -17.42678 -16.73656 -16.68751 -16.30279 -16.00073 -15.16350 -15.06325 -15.01045 -14.79113 -14.49472 -14.37338 -13.74160 -13.62163 -13.48714 -13.24563 -13.17320 -12.98199 -12.71347 -12.40428 -12.22855 -12.13332 -12.07157 -11.98140 -11.52133 -11.32448 -11.08183 -10.96555 -10.91503 -10.67056 -10.28247 -9.68413 -8.46195 -6.57556 1.25690 1.32306 1.51449 1.56345 1.98771 2.26439 2.90998 3.37338 3.57530 3.72766 3.78529 3.79480 4.09661 4.23879 4.27423 4.28825 4.34933 4.37849 4.43018 4.55009 4.60756 4.61088 4.73973 4.78678 4.94949 4.99756 5.10648 5.15645 5.21096 5.21869 5.26765 5.27873 5.36484 5.38330 5.42516 5.49320 5.58091 6.02516 6.53107 6.58534 7.09738 7.13771 7.29186 8.67896 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033108 B = 0.005451 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.512752 B = 5135.375213 C = 5485.317845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.219 1.219 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.214 3.786 10 O -0.578 6.578 11 C -0.139 4.139 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.514 3.486 15 O -0.601 6.601 16 C -0.089 4.089 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.099 4.099 22 C 0.113 3.887 23 H 0.268 0.732 24 H 0.383 0.617 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.940 -9.662 -1.767 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.154 4.154 3 Si 0.740 3.260 4 H -0.225 1.225 5 H -0.221 1.221 6 H -0.141 1.141 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.173 3.827 10 O -0.386 6.386 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.346 5.346 14 C 0.305 3.695 15 O -0.482 6.482 16 C -0.110 4.110 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.011 4.011 23 H 0.078 0.922 24 H 0.232 0.768 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 21.063 -8.654 -2.557 22.915 hybrid contribution -1.166 1.230 0.046 1.695 sum 19.896 -7.425 -2.510 21.385 Atomic orbital electron populations 1.70005 1.07836 1.28271 1.50429 1.25546 0.94973 1.02055 0.92793 0.86479 0.81117 0.80096 0.78311 1.22501 1.22099 1.14105 1.21558 0.91004 0.93738 1.51972 0.92507 1.19791 0.90822 0.90393 0.81688 1.86419 1.74157 1.61825 1.16216 1.23277 0.94757 0.96568 1.03064 1.22679 0.97938 0.87813 0.93214 1.48792 1.25340 1.28955 1.31464 1.21480 0.84313 0.85654 0.78100 1.90641 1.75616 1.31273 1.50702 1.21353 0.91312 0.99578 0.98748 1.21703 0.96779 1.01034 0.95846 1.21516 0.95355 0.99138 0.98715 1.21590 0.98370 1.01283 0.94691 1.21527 0.94823 1.00041 0.98505 1.21342 0.97181 0.99184 0.96017 1.22212 0.86460 0.95152 0.97234 0.92239 0.76752 0.87470 0.90930 0.87340 0.89370 0.86299 0.93292 0.89816 0.90087 0.90337 0.90051 0.92870 0.90479 0.91119 0.92988 0.93438 0.93471 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 2 C 0.05 2.74 5.47 84.65 0.46 3.21 16 3 Si 0.91 47.02 23.98 68.60 1.65 48.67 16 4 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 5 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.22 -10.78 5.36 99.48 0.53 -10.25 16 7 C -0.54 -29.20 8.70 25.60 0.22 -28.98 16 8 H 0.06 3.27 8.03 -2.92 -0.02 3.25 16 9 C 0.21 9.27 0.69 -10.35 -0.01 9.26 16 10 O -0.58 -23.66 10.56 -148.98 -1.57 -25.24 16 11 C -0.14 -4.46 6.23 31.99 0.20 -4.27 16 12 C 0.10 2.82 5.13 86.86 0.45 3.27 16 13 N -0.61 -22.83 3.32 -811.78 -2.70 -25.52 16 14 C 0.51 18.93 7.21 87.66 0.63 19.56 16 15 O -0.60 -28.03 16.31 -3.02 -0.05 -28.08 16 16 C -0.09 -2.17 1.88 -11.54 -0.02 -2.19 16 17 C -0.12 -2.26 5.01 30.60 0.15 -2.10 16 18 C -0.11 -1.44 5.92 30.60 0.18 -1.26 16 19 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 20 C -0.11 -1.76 5.92 30.59 0.18 -1.58 16 21 C -0.10 -2.38 4.49 30.60 0.14 -2.24 16 22 C 0.11 5.26 4.37 86.73 0.38 5.64 16 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.38 12.97 9.07 -74.05 -0.67 12.30 16 25 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.07 2.45 8.05 -2.38 -0.02 2.43 16 27 H 0.11 2.09 7.36 -2.39 -0.02 2.08 16 28 H 0.09 2.10 7.07 -2.39 -0.02 2.08 16 29 H 0.12 2.33 7.85 -2.38 -0.02 2.31 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.50 4.99 -2.38 -0.01 1.49 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.05 2.48 7.61 -2.39 -0.02 2.46 16 41 H 0.04 1.81 5.59 -2.38 -0.01 1.80 16 Total: -1.00 -73.60 309.90 0.95 -72.65 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.17 Total: 17.03 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 3.15 Total: -3.15 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.40 Total: -81.87 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -1.62 Total: -53.32 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.65 Total: 48.67 kcal Total: -73.60 0.95 -72.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.755 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds