Wall clock time and date at job start Mon Mar 30 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47024 * 300.00045 * 3 2 1 6 6 H 1.48506 * 109.47163 * 59.99729 * 3 2 1 7 7 C 1.37881 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.91644 * 56.09766 * 9 7 2 11 11 C 1.55159 * 111.00627 * 292.19732 * 9 7 2 12 12 C 1.54327 * 102.94219 * 206.42218 * 11 9 7 13 13 N 1.47028 * 107.27032 * 22.19168 * 12 11 9 14 14 C 1.34774 * 125.64663 * 181.07481 * 13 12 11 15 15 O 1.21283 * 119.99628 * 175.00102 * 14 13 12 16 16 C 1.50696 * 120.00074 * 355.00250 * 14 13 12 17 17 C 1.53006 * 109.47036 * 266.31724 * 16 14 13 18 18 C 1.52997 * 109.46923 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47258 * 60.00328 * 18 17 16 20 20 C 1.53007 * 109.47203 * 299.99899 * 19 18 17 21 21 C 1.52996 * 109.46884 * 59.99508 * 20 19 18 22 22 C 1.47429 * 108.70322 * 1.06241 * 13 12 11 23 23 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 24 24 H 0.96697 * 114.00248 * 303.90272 * 10 9 7 25 25 H 1.08996 * 110.72022 * 88.06357 * 11 9 7 26 26 H 1.08997 * 110.87320 * 324.85571 * 11 9 7 27 27 H 1.08994 * 109.88584 * 262.77861 * 12 11 9 28 28 H 1.08998 * 109.88211 * 141.60838 * 12 11 9 29 29 H 1.08993 * 109.47359 * 26.32136 * 16 14 13 30 30 H 1.09001 * 109.47160 * 300.00133 * 17 16 14 31 31 H 1.09002 * 109.47037 * 60.00418 * 17 16 14 32 32 H 1.09001 * 109.47319 * 300.00045 * 18 17 16 33 33 H 1.09005 * 109.47060 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47631 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47186 * 59.99636 * 19 18 17 36 36 H 1.09001 * 109.46835 * 299.99952 * 20 19 18 37 37 H 1.08993 * 109.47431 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.47025 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47022 * 60.00559 * 21 20 19 40 40 H 1.08994 * 110.36891 * 94.70554 * 22 13 12 41 41 H 1.08998 * 110.36435 * 217.03110 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.3506 -2.5694 -1.1058 11 6 0.4995 -2.7063 1.3433 12 6 0.3978 -4.2426 1.4489 13 7 1.4588 -4.8094 0.6035 14 6 1.6916 -6.1227 0.4101 15 8 2.5390 -6.4782 -0.3814 16 6 0.8988 -7.1494 1.1771 17 6 1.6642 -7.5440 2.4419 18 6 0.8591 -8.5859 3.2210 19 6 0.6457 -9.8235 2.3470 20 6 -0.1197 -9.4289 1.0822 21 6 0.6854 -8.3869 0.3032 22 6 2.2258 -3.7031 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2789 -1.8366 -1.1481 25 1 -0.4924 -2.2561 1.3032 26 1 1.0727 -2.2996 2.1763 27 1 -0.5771 -4.5750 1.0927 28 1 0.5426 -4.5534 2.4835 29 1 -0.0681 -6.7294 1.4538 30 1 2.6312 -7.9641 2.1651 31 1 1.8158 -6.6624 3.0647 32 1 -0.1077 -8.1654 3.4977 33 1 1.4046 -8.8674 4.1217 34 1 0.0724 -10.5660 2.9022 35 1 1.6125 -10.2439 2.0703 36 1 -1.0865 -9.0084 1.3590 37 1 -0.2713 -10.3104 0.4594 38 1 0.1404 -8.1062 -0.5981 39 1 1.6523 -8.8074 0.0265 40 1 3.1051 -3.4790 0.6058 41 1 2.5184 -3.9546 -1.0173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:33 Heat of formation + Delta-G solvation = -113.884748 kcal Electronic energy + Delta-G solvation = -21350.475843 eV Core-core repulsion = 18228.833750 eV Total energy + Delta-G solvation = -3121.642093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93405 -38.02193 -36.77969 -34.29132 -32.15515 -31.25661 -30.78825 -29.58647 -28.25637 -25.36480 -23.38715 -22.60991 -21.94328 -20.09013 -19.52533 -18.56163 -17.24995 -16.67877 -15.62445 -15.08481 -14.98720 -14.61744 -14.25327 -14.12771 -14.02758 -13.66861 -13.11932 -12.79067 -12.38843 -12.23499 -12.15546 -11.89121 -11.69734 -11.37945 -11.33092 -11.24067 -11.13739 -10.90094 -10.67507 -10.60542 -10.48168 -10.40736 -10.13073 -10.05459 -9.43825 -9.14901 -8.69766 -8.21805 -7.94692 -6.31868 -4.39472 3.10867 3.17151 3.26380 3.30755 3.59404 4.24780 4.65727 4.67746 4.72741 4.95136 5.14140 5.18681 5.22457 5.41145 5.44006 5.48938 5.55707 5.58337 5.72071 5.81002 5.85748 5.94272 5.99085 6.03152 6.07466 6.13928 6.14911 6.28122 6.32578 6.43210 6.45338 6.67053 6.87907 6.99231 7.28755 7.31422 7.71923 7.98113 8.18955 8.62469 8.71069 9.29775 9.47027 10.75924 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042066 B = 0.004360 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.454654 B = 6420.098806 C = 6489.798141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.101 3.899 13 N -0.607 5.607 14 C 0.527 3.473 15 O -0.556 6.556 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.103 4.103 22 C 0.118 3.882 23 H 0.269 0.731 24 H 0.385 0.615 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -12.941 6.928 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.178 4.178 12 C -0.022 4.022 13 N -0.339 5.339 14 C 0.315 3.685 15 O -0.435 6.435 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.004 4.004 23 H 0.079 0.921 24 H 0.237 0.763 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.605 -13.621 6.380 15.127 hybrid contribution -0.033 1.600 0.234 1.617 sum -1.638 -12.021 6.614 13.818 Atomic orbital electron populations 1.69570 1.06018 1.27652 1.50572 1.24993 0.95013 0.99586 0.93427 0.86346 0.80163 0.82643 0.77740 1.19552 1.20729 1.20798 1.21538 0.93845 0.90237 1.51702 0.91584 1.19579 0.86043 0.90839 0.82742 1.86105 1.50959 1.52708 1.49665 1.23203 1.03053 0.90138 1.01423 1.22141 0.90124 0.97017 0.92887 1.48644 1.32970 1.05057 1.47206 1.20218 0.83776 0.81935 0.82585 1.90636 1.35811 1.80110 1.36985 1.21267 0.99585 0.95105 0.96257 1.21426 0.98999 0.99111 0.94820 1.21520 1.00325 0.95592 0.97931 1.21557 1.00573 0.97364 0.96304 1.21542 0.98810 0.98641 0.96556 1.21390 1.01286 0.93926 0.97457 1.22377 0.94470 0.85479 0.98092 0.92123 0.76285 0.89925 0.91383 0.92452 0.92921 0.89548 0.91291 0.91585 0.91805 0.91816 0.92168 0.91920 0.91972 0.91857 0.91783 0.90785 0.91225 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.02 10.79 55.43 0.60 -22.42 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.91 8.25 -34.44 -0.28 -14.19 16 8 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 9 C 0.25 6.03 0.89 -89.62 -0.08 5.95 16 10 O -0.58 -15.16 13.18 -35.23 -0.46 -15.62 16 11 C -0.14 -2.97 5.64 -24.89 -0.14 -3.11 16 12 C 0.10 1.83 6.01 -3.06 -0.02 1.82 16 13 N -0.61 -12.23 3.33 -170.52 -0.57 -12.80 16 14 C 0.53 10.14 6.86 -10.99 -0.08 10.07 16 15 O -0.56 -12.54 16.48 5.56 0.09 -12.44 16 16 C -0.10 -1.45 2.21 -91.77 -0.20 -1.65 16 17 C -0.11 -1.30 5.19 -26.73 -0.14 -1.44 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 20 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 21 C -0.10 -1.36 4.85 -26.73 -0.13 -1.49 16 22 C 0.12 2.68 6.11 -2.52 -0.02 2.66 16 23 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 24 H 0.39 10.04 6.93 45.56 0.32 10.35 16 25 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 26 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 27 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.17 6.97 -51.93 -0.36 0.80 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 40 H 0.07 1.53 8.01 -51.93 -0.42 1.11 16 41 H 0.07 1.73 7.99 -51.93 -0.41 1.31 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -28.40 322.75 -8.44 -36.84 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.29 Total: 10.08 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.65 Total: -3.54 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.03 Total: -35.22 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.37 Total: -28.07 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.40 -8.44 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.044 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds