Wall clock time and date at job start Mon Mar 30 2020 01:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47024 * 300.00045 * 3 2 1 6 6 H 1.48506 * 109.47163 * 59.99729 * 3 2 1 7 7 C 1.37881 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.91644 * 56.09766 * 9 7 2 11 11 C 1.55159 * 111.00627 * 292.19732 * 9 7 2 12 12 C 1.54327 * 102.94219 * 206.42218 * 11 9 7 13 13 N 1.47028 * 107.27032 * 22.19168 * 12 11 9 14 14 C 1.34774 * 125.64663 * 181.07481 * 13 12 11 15 15 O 1.21283 * 119.99628 * 175.00102 * 14 13 12 16 16 C 1.50696 * 120.00074 * 355.00250 * 14 13 12 17 17 C 1.53006 * 109.47036 * 266.31724 * 16 14 13 18 18 C 1.52997 * 109.46923 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47258 * 60.00328 * 18 17 16 20 20 C 1.53007 * 109.47203 * 299.99899 * 19 18 17 21 21 C 1.52996 * 109.46884 * 59.99508 * 20 19 18 22 22 C 1.47429 * 108.70322 * 1.06241 * 13 12 11 23 23 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 24 24 H 0.96697 * 114.00248 * 303.90272 * 10 9 7 25 25 H 1.08996 * 110.72022 * 88.06357 * 11 9 7 26 26 H 1.08997 * 110.87320 * 324.85571 * 11 9 7 27 27 H 1.08994 * 109.88584 * 262.77861 * 12 11 9 28 28 H 1.08998 * 109.88211 * 141.60838 * 12 11 9 29 29 H 1.08993 * 109.47359 * 26.32136 * 16 14 13 30 30 H 1.09001 * 109.47160 * 300.00133 * 17 16 14 31 31 H 1.09002 * 109.47037 * 60.00418 * 17 16 14 32 32 H 1.09001 * 109.47319 * 300.00045 * 18 17 16 33 33 H 1.09005 * 109.47060 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47631 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47186 * 59.99636 * 19 18 17 36 36 H 1.09001 * 109.46835 * 299.99952 * 20 19 18 37 37 H 1.08993 * 109.47431 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.47025 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47022 * 60.00559 * 21 20 19 40 40 H 1.08994 * 110.36891 * 94.70554 * 22 13 12 41 41 H 1.08998 * 110.36435 * 217.03110 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.3506 -2.5694 -1.1058 11 6 0.4995 -2.7063 1.3433 12 6 0.3978 -4.2426 1.4489 13 7 1.4588 -4.8094 0.6035 14 6 1.6916 -6.1227 0.4101 15 8 2.5390 -6.4782 -0.3814 16 6 0.8988 -7.1494 1.1771 17 6 1.6642 -7.5440 2.4419 18 6 0.8591 -8.5859 3.2210 19 6 0.6457 -9.8235 2.3470 20 6 -0.1197 -9.4289 1.0822 21 6 0.6854 -8.3869 0.3032 22 6 2.2258 -3.7031 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2789 -1.8366 -1.1481 25 1 -0.4924 -2.2561 1.3032 26 1 1.0727 -2.2996 2.1763 27 1 -0.5771 -4.5750 1.0927 28 1 0.5426 -4.5534 2.4835 29 1 -0.0681 -6.7294 1.4538 30 1 2.6312 -7.9641 2.1651 31 1 1.8158 -6.6624 3.0647 32 1 -0.1077 -8.1654 3.4977 33 1 1.4046 -8.8674 4.1217 34 1 0.0724 -10.5660 2.9022 35 1 1.6125 -10.2439 2.0703 36 1 -1.0865 -9.0084 1.3590 37 1 -0.2713 -10.3104 0.4594 38 1 0.1404 -8.1062 -0.5981 39 1 1.6523 -8.8074 0.0265 40 1 3.1051 -3.4790 0.6058 41 1 2.5184 -3.9546 -1.0173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:32 Heat of formation + Delta-G solvation = -131.798579 kcal Electronic energy + Delta-G solvation = -21351.252645 eV Core-core repulsion = 18228.833750 eV Total energy + Delta-G solvation = -3122.418895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39018 -39.45835 -38.19941 -36.12371 -34.15674 -32.45608 -31.68111 -31.17408 -29.97943 -27.17745 -24.75954 -23.51314 -23.33213 -21.62173 -20.79578 -20.00012 -19.17102 -18.19632 -17.02907 -16.88378 -16.57020 -16.09970 -15.67407 -15.41417 -15.03605 -14.90803 -14.77984 -14.10186 -13.95258 -13.67343 -13.46414 -13.24507 -13.15109 -13.07469 -13.02539 -12.65814 -12.49047 -12.26871 -12.21095 -12.02400 -11.89233 -11.57727 -11.36171 -11.29844 -11.01722 -10.72054 -10.56151 -10.16271 -9.58733 -8.26849 -6.41575 1.40433 1.44849 1.54836 1.59912 2.05825 2.39382 2.98082 3.47571 3.71992 3.79794 3.81275 4.00478 4.17359 4.25494 4.32031 4.34688 4.36023 4.44839 4.55323 4.58812 4.61047 4.67650 4.69515 4.86545 4.96539 5.10888 5.12988 5.16384 5.25886 5.26541 5.29677 5.35579 5.40076 5.42531 5.50742 5.57480 5.75815 6.03944 6.60176 6.65027 7.14880 7.30054 7.43834 8.79891 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042066 B = 0.004360 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.454654 B = 6420.098806 C = 6489.798141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.036 3.964 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.234 3.766 10 O -0.597 6.597 11 C -0.130 4.130 12 C 0.108 3.892 13 N -0.611 5.611 14 C 0.519 3.481 15 O -0.598 6.598 16 C -0.092 4.092 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.103 4.103 22 C 0.121 3.879 23 H 0.273 0.727 24 H 0.381 0.619 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -13.822 8.950 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.165 4.165 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.074 0.926 9 C 0.194 3.806 10 O -0.407 6.407 11 C -0.169 4.169 12 C -0.014 4.014 13 N -0.343 5.343 14 C 0.310 3.690 15 O -0.479 6.479 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.002 4.002 23 H 0.083 0.917 24 H 0.233 0.767 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.710 -14.514 8.423 16.998 hybrid contribution 0.333 1.888 -0.464 1.972 sum -2.378 -12.627 7.959 15.114 Atomic orbital electron populations 1.69624 1.06727 1.28494 1.50145 1.25619 0.95838 1.02099 0.92898 0.85443 0.78782 0.79116 0.77867 1.19833 1.20637 1.19841 1.21748 0.93676 0.91672 1.52993 0.92581 1.19774 0.86382 0.90778 0.83666 1.86092 1.51165 1.52513 1.50925 1.22995 1.01788 0.92621 0.99446 1.22194 0.90045 0.94516 0.94658 1.48762 1.33169 1.04994 1.47363 1.21253 0.83512 0.82127 0.82156 1.90610 1.37788 1.80645 1.38887 1.21343 0.99550 0.93805 0.96584 1.21452 0.98615 1.00123 0.93947 1.21519 1.00583 0.94719 0.97979 1.21579 1.00557 0.97713 0.95906 1.21525 0.98716 0.97907 0.96764 1.21404 1.00834 0.94406 0.97433 1.22156 0.94811 0.86326 0.96867 0.91741 0.76721 0.90958 0.91444 0.91119 0.89075 0.87837 0.92708 0.91418 0.90522 0.90253 0.89916 0.92483 0.90775 0.90741 0.93142 0.92599 0.90959 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.50 10.79 21.45 0.23 -46.27 16 2 C 0.04 1.86 5.30 84.66 0.45 2.30 16 3 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.56 -29.73 8.25 25.60 0.21 -29.52 16 8 H 0.06 2.98 7.77 -2.91 -0.02 2.96 16 9 C 0.23 11.54 0.89 -10.15 -0.01 11.53 16 10 O -0.60 -31.65 13.18 -148.98 -1.96 -33.61 16 11 C -0.13 -5.45 5.64 31.78 0.18 -5.27 16 12 C 0.11 3.69 6.01 86.73 0.52 4.22 16 13 N -0.61 -24.46 3.33 -811.78 -2.70 -27.16 16 14 C 0.52 19.96 6.86 87.66 0.60 20.56 16 15 O -0.60 -27.75 16.48 -3.04 -0.05 -27.80 16 16 C -0.09 -2.49 2.21 -11.54 -0.03 -2.51 16 17 C -0.10 -2.32 5.19 30.60 0.16 -2.16 16 18 C -0.11 -1.73 5.92 30.59 0.18 -1.54 16 19 C -0.12 -1.81 5.92 30.60 0.18 -1.62 16 20 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 21 C -0.10 -2.61 4.85 30.59 0.15 -2.46 16 22 C 0.12 5.68 6.11 86.86 0.53 6.21 16 23 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 24 H 0.38 20.29 6.93 -74.06 -0.51 19.78 16 25 H 0.07 3.17 7.85 -2.39 -0.02 3.15 16 26 H 0.07 2.80 8.04 -2.39 -0.02 2.78 16 27 H 0.07 2.26 7.91 -2.39 -0.02 2.24 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.10 2.47 6.97 -2.39 -0.02 2.45 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.61 7.86 -2.39 -0.02 1.59 16 40 H 0.07 3.27 8.01 -2.39 -0.02 3.25 16 41 H 0.04 2.15 7.99 -2.39 -0.02 2.13 16 Total: -1.00 -62.27 322.75 1.34 -60.93 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.49 Total: 32.91 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 3.31 Total: -2.02 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -2.47 Total: -73.43 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -2.01 Total: -61.41 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -62.27 1.34 -60.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.871 kcal (2) G-P(sol) polarization free energy of solvation -62.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds