Wall clock time and date at job start Mon Mar 30 2020 01:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99645 * 2 1 4 4 H 1.48494 * 109.46937 * 269.99423 * 3 2 1 5 5 H 1.48496 * 109.47312 * 29.99993 * 3 2 1 6 6 H 1.48506 * 109.46755 * 149.99999 * 3 2 1 7 7 C 1.37876 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00349 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99522 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88648 * 303.87333 * 9 7 2 11 11 C 1.55405 * 111.07313 * 67.66152 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.48318 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21275 * 120.00167 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.99872 * 0.02817 * 14 13 12 17 17 C 1.53000 * 109.47301 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47222 * 180.02562 * 17 16 14 19 19 C 1.53785 * 113.60945 * 274.13457 * 18 17 16 20 20 C 1.53959 * 87.01796 * 220.04652 * 19 18 17 21 21 C 1.53778 * 87.11036 * 25.36687 * 20 19 18 22 22 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 23 23 H 0.96993 * 120.00181 * 0.02562 * 1 2 3 24 24 H 0.96698 * 114.00346 * 56.12317 * 10 9 7 25 25 H 1.09000 * 110.69068 * 35.19577 * 11 9 7 26 26 H 1.09002 * 110.85092 * 271.84571 * 11 9 7 27 27 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 28 28 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 29 29 H 1.08997 * 109.47569 * 299.99781 * 16 14 13 30 30 H 1.09007 * 109.47441 * 59.99852 * 16 14 13 31 31 H 1.09005 * 109.47215 * 300.00008 * 17 16 14 32 32 H 1.08998 * 109.47041 * 59.99705 * 17 16 14 33 33 H 1.08994 * 112.85592 * 45.33023 * 18 17 16 34 34 H 1.08999 * 113.61710 * 334.56615 * 19 18 17 35 35 H 1.08999 * 113.61163 * 105.47447 * 19 18 17 36 36 H 1.08993 * 113.54098 * 270.81191 * 20 19 18 37 37 H 1.09003 * 113.73751 * 139.94377 * 20 19 18 38 38 H 1.09004 * 113.61277 * 220.09033 * 21 20 19 39 39 H 1.08999 * 113.62277 * 89.18551 * 21 20 19 40 40 H 1.08999 * 110.36956 * 142.96999 * 22 13 12 41 41 H 1.09003 * 110.36599 * 265.28903 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3515 -2.5680 1.1087 11 6 0.4949 -2.7077 -1.3410 12 6 0.3973 -4.2444 -1.4439 13 7 1.4588 -4.8100 -0.5985 14 6 1.6915 -6.1231 -0.4032 15 8 2.5990 -6.4773 0.3192 16 6 0.8241 -7.1513 -1.0824 17 6 1.2979 -8.5538 -0.6961 18 6 0.4176 -9.5977 -1.3863 19 6 -0.8641 -9.9353 -0.6063 20 6 -0.6272 -11.4020 -1.0098 21 6 0.8642 -11.0467 -1.1299 22 6 2.2259 -3.7031 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2781 -1.8352 1.1504 25 1 1.0686 -2.3010 -2.1738 26 1 -0.4981 -2.2601 -1.3003 27 1 0.5415 -4.5566 -2.4783 28 1 -0.5773 -4.5786 -1.0884 29 1 -0.2111 -7.0179 -0.7686 30 1 0.8946 -7.0292 -2.1634 31 1 2.3331 -8.6871 -1.0104 32 1 1.2277 -8.6761 0.3847 33 1 0.2422 -9.3745 -2.4386 34 1 -0.7819 -9.7587 0.4661 35 1 -1.7657 -9.5025 -1.0398 36 1 -1.0895 -11.6725 -1.9590 37 1 -0.8432 -12.1161 -0.2150 38 1 1.3558 -11.5099 -1.9855 39 1 1.4198 -11.1745 -0.2009 40 1 2.5192 -3.9533 1.0207 41 1 3.1051 -3.4797 -0.6033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:10 Heat of formation + Delta-G solvation = -83.969532 kcal Electronic energy + Delta-G solvation = -20651.528170 eV Core-core repulsion = 17531.183298 eV Total energy + Delta-G solvation = -3120.344872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 6.47 seconds Orbital eigenvalues (eV) -39.63278 -38.81019 -37.19128 -34.28151 -32.61135 -32.15135 -29.82346 -28.38288 -26.54899 -25.69838 -24.75913 -22.53508 -21.57388 -19.69433 -19.53664 -18.56144 -17.24959 -16.58535 -15.80414 -15.48220 -14.99597 -14.94182 -14.57209 -14.20848 -13.96797 -13.20530 -13.04164 -12.78651 -12.55441 -12.33177 -12.03506 -11.93796 -11.61979 -11.40808 -11.33196 -11.29496 -10.95132 -10.87942 -10.65366 -10.61556 -10.50460 -10.29182 -10.16875 -10.05032 -9.44960 -9.25862 -8.69745 -8.21995 -7.95165 -6.31684 -4.39347 3.14542 3.18144 3.25953 3.30144 3.61225 4.24775 4.48536 4.54200 4.61604 4.73966 4.92445 5.02618 5.19911 5.35762 5.47754 5.54983 5.59269 5.65065 5.65820 5.74760 5.75403 5.78288 5.81398 5.89390 6.02119 6.05996 6.22371 6.28788 6.32897 6.44489 6.47303 6.67130 6.88145 6.98544 7.28197 7.31445 7.71890 7.98107 8.19130 8.62319 8.71146 9.29746 9.46761 10.76015 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.003586 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.118866 B = 7807.239417 C = 8021.595556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.140 4.140 12 C 0.101 3.899 13 N -0.608 5.608 14 C 0.520 3.480 15 O -0.558 6.558 16 C -0.133 4.133 17 C -0.092 4.092 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.138 4.138 22 C 0.119 3.881 23 H 0.269 0.731 24 H 0.385 0.615 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -14.467 -5.384 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.022 4.022 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.438 6.438 16 C -0.173 4.173 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.177 4.177 20 C -0.181 4.181 21 C -0.175 4.175 22 C -0.003 4.003 23 H 0.079 0.921 24 H 0.237 0.763 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.502 -15.151 -4.870 16.110 hybrid contribution -0.046 1.570 -0.311 1.601 sum -2.549 -13.581 -5.180 14.757 Atomic orbital electron populations 1.69561 1.05999 1.27757 1.50479 1.24998 0.95029 0.99585 0.93438 0.86390 0.79897 0.82313 0.78238 1.20458 1.20993 1.19657 1.21493 0.93800 0.90238 1.51795 0.91647 1.19637 0.86036 0.90839 0.82715 1.86098 1.50992 1.52746 1.49625 1.23243 1.02996 0.90144 1.01449 1.22128 0.90142 0.97087 0.92833 1.48650 1.33004 1.05150 1.47291 1.20297 0.84981 0.82054 0.81777 1.90645 1.33295 1.80161 1.39701 1.21613 1.00214 0.94155 1.01305 1.21317 0.99320 0.91526 1.00871 1.22590 0.96125 0.94489 0.99758 1.23033 0.97891 0.96096 1.00634 1.22840 0.96901 0.96997 1.01409 1.22933 0.96331 0.96252 1.01981 1.22364 0.94478 0.85435 0.98030 0.92072 0.76276 0.91407 0.89901 0.92951 0.92430 0.89288 0.89511 0.91262 0.91176 0.89349 0.90002 0.91609 0.90467 0.91719 0.91739 0.90042 0.91183 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.96 10.79 55.43 0.60 -22.36 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.89 8.25 -34.44 -0.28 -14.17 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 6.01 0.89 -89.48 -0.08 5.93 16 10 O -0.58 -15.07 13.18 -35.23 -0.46 -15.53 16 11 C -0.14 -2.96 5.66 -24.76 -0.14 -3.10 16 12 C 0.10 1.81 6.48 -3.07 -0.02 1.79 16 13 N -0.61 -12.18 3.33 -170.52 -0.57 -12.74 16 14 C 0.52 9.88 7.85 -10.99 -0.09 9.79 16 15 O -0.56 -12.42 16.24 5.56 0.09 -12.33 16 16 C -0.13 -1.82 4.89 -27.89 -0.14 -1.96 16 17 C -0.09 -1.17 4.33 -26.73 -0.12 -1.28 16 18 C -0.11 -1.10 3.64 -89.80 -0.33 -1.43 16 19 C -0.14 -1.30 7.65 -25.82 -0.20 -1.50 16 20 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 21 C -0.14 -1.24 7.64 -25.92 -0.20 -1.44 16 22 C 0.12 2.69 6.08 -2.53 -0.02 2.68 16 23 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.39 9.98 6.93 45.56 0.32 10.30 16 25 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 26 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 1.70 8.04 -51.93 -0.42 1.29 16 41 H 0.07 1.53 8.01 -51.93 -0.42 1.11 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -28.33 331.30 -8.62 -36.95 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.35 Total: 10.34 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.90 Total: -4.35 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.03 Total: -35.11 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.37 Total: -27.86 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.33 -8.62 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.020 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.47 seconds