Wall clock time and date at job start Mon Mar 30 2020 01:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99645 * 2 1 4 4 H 1.48494 * 109.46937 * 269.99423 * 3 2 1 5 5 H 1.48496 * 109.47312 * 29.99993 * 3 2 1 6 6 H 1.48506 * 109.46755 * 149.99999 * 3 2 1 7 7 C 1.37876 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00349 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99522 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88648 * 303.87333 * 9 7 2 11 11 C 1.55405 * 111.07313 * 67.66152 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.48318 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21275 * 120.00167 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.99872 * 0.02817 * 14 13 12 17 17 C 1.53000 * 109.47301 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47222 * 180.02562 * 17 16 14 19 19 C 1.53785 * 113.60945 * 274.13457 * 18 17 16 20 20 C 1.53959 * 87.01796 * 220.04652 * 19 18 17 21 21 C 1.53778 * 87.11036 * 25.36687 * 20 19 18 22 22 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 23 23 H 0.96993 * 120.00181 * 0.02562 * 1 2 3 24 24 H 0.96698 * 114.00346 * 56.12317 * 10 9 7 25 25 H 1.09000 * 110.69068 * 35.19577 * 11 9 7 26 26 H 1.09002 * 110.85092 * 271.84571 * 11 9 7 27 27 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 28 28 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 29 29 H 1.08997 * 109.47569 * 299.99781 * 16 14 13 30 30 H 1.09007 * 109.47441 * 59.99852 * 16 14 13 31 31 H 1.09005 * 109.47215 * 300.00008 * 17 16 14 32 32 H 1.08998 * 109.47041 * 59.99705 * 17 16 14 33 33 H 1.08994 * 112.85592 * 45.33023 * 18 17 16 34 34 H 1.08999 * 113.61710 * 334.56615 * 19 18 17 35 35 H 1.08999 * 113.61163 * 105.47447 * 19 18 17 36 36 H 1.08993 * 113.54098 * 270.81191 * 20 19 18 37 37 H 1.09003 * 113.73751 * 139.94377 * 20 19 18 38 38 H 1.09004 * 113.61277 * 220.09033 * 21 20 19 39 39 H 1.08999 * 113.62277 * 89.18551 * 21 20 19 40 40 H 1.08999 * 110.36956 * 142.96999 * 22 13 12 41 41 H 1.09003 * 110.36599 * 265.28903 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3515 -2.5680 1.1087 11 6 0.4949 -2.7077 -1.3410 12 6 0.3973 -4.2444 -1.4439 13 7 1.4588 -4.8100 -0.5985 14 6 1.6915 -6.1231 -0.4032 15 8 2.5990 -6.4773 0.3192 16 6 0.8241 -7.1513 -1.0824 17 6 1.2979 -8.5538 -0.6961 18 6 0.4176 -9.5977 -1.3863 19 6 -0.8641 -9.9353 -0.6063 20 6 -0.6272 -11.4020 -1.0098 21 6 0.8642 -11.0467 -1.1299 22 6 2.2259 -3.7031 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2781 -1.8352 1.1504 25 1 1.0686 -2.3010 -2.1738 26 1 -0.4981 -2.2601 -1.3003 27 1 0.5415 -4.5566 -2.4783 28 1 -0.5773 -4.5786 -1.0884 29 1 -0.2111 -7.0179 -0.7686 30 1 0.8946 -7.0292 -2.1634 31 1 2.3331 -8.6871 -1.0104 32 1 1.2277 -8.6761 0.3847 33 1 0.2422 -9.3745 -2.4386 34 1 -0.7819 -9.7587 0.4661 35 1 -1.7657 -9.5025 -1.0398 36 1 -1.0895 -11.6725 -1.9590 37 1 -0.8432 -12.1161 -0.2150 38 1 1.3558 -11.5099 -1.9855 39 1 1.4198 -11.1745 -0.2009 40 1 2.5192 -3.9533 1.0207 41 1 3.1051 -3.4797 -0.6033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:02 Heat of formation + Delta-G solvation = -101.289386 kcal Electronic energy + Delta-G solvation = -20652.279215 eV Core-core repulsion = 17531.183298 eV Total energy + Delta-G solvation = -3121.095917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -41.09428 -39.74474 -38.85356 -36.09121 -34.14525 -33.72753 -31.50763 -30.06149 -27.88210 -26.52104 -26.22151 -23.96462 -22.69441 -21.50245 -20.34363 -20.00776 -19.15435 -18.07212 -17.04506 -16.92687 -16.65707 -16.23384 -16.00263 -15.55481 -15.30367 -14.73906 -14.61056 -13.99124 -13.70051 -13.64276 -13.46619 -13.26495 -13.22559 -13.04489 -12.83029 -12.61362 -12.48067 -12.28817 -12.24423 -11.92326 -11.84823 -11.38671 -11.30794 -11.12859 -10.94920 -10.77594 -10.61266 -10.14823 -9.55927 -8.26025 -6.40609 1.41618 1.44955 1.53861 1.66444 2.10537 2.39905 2.98797 3.56377 3.71041 3.80680 3.83161 3.96981 4.03163 4.03888 4.24911 4.30393 4.37991 4.45068 4.59857 4.61456 4.69051 4.78693 4.86197 4.91797 4.93937 4.95145 5.05597 5.13575 5.17596 5.21229 5.27783 5.36171 5.44247 5.47635 5.52134 5.71090 5.76705 6.05108 6.61469 6.68060 7.18848 7.30816 7.45011 8.80314 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.003586 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.118866 B = 7807.239417 C = 8021.595556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.036 3.964 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.131 4.131 12 C 0.107 3.893 13 N -0.613 5.613 14 C 0.512 3.488 15 O -0.599 6.599 16 C -0.121 4.121 17 C -0.088 4.088 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.141 4.141 22 C 0.123 3.877 23 H 0.273 0.727 24 H 0.381 0.619 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -15.260 -7.217 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.165 4.165 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.169 4.169 12 C -0.015 4.015 13 N -0.346 5.346 14 C 0.303 3.697 15 O -0.482 6.482 16 C -0.160 4.160 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.180 4.180 20 C -0.175 4.175 21 C -0.178 4.178 22 C 0.000 4.000 23 H 0.082 0.918 24 H 0.233 0.767 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.610 -15.957 -6.721 17.687 hybrid contribution 0.319 1.822 0.315 1.877 sum -3.290 -14.135 -6.406 15.864 Atomic orbital electron populations 1.69617 1.06665 1.28524 1.50081 1.25623 0.95868 1.02086 0.92969 0.85498 0.78448 0.78885 0.78415 1.19612 1.20525 1.20222 1.21714 0.93632 0.91720 1.53013 0.92669 1.19836 0.86408 0.90757 0.83688 1.86084 1.51172 1.52526 1.50851 1.23035 1.01680 0.92858 0.99369 1.22189 0.90187 0.94395 0.94686 1.48769 1.33196 1.05088 1.47504 1.21347 0.84933 0.82222 0.81196 1.90624 1.35306 1.80674 1.41554 1.21668 0.99561 0.92404 1.02369 1.21269 0.99363 0.92002 0.99965 1.22600 0.95788 0.93828 1.00318 1.23047 0.97917 0.97036 1.00013 1.22834 0.96091 0.96367 1.02182 1.22952 0.97042 0.95839 1.01988 1.22123 0.94766 0.86345 0.96805 0.91759 0.76731 0.91640 0.90947 0.88969 0.90803 0.87592 0.86514 0.92523 0.93201 0.87686 0.91104 0.90699 0.89114 0.91380 0.90792 0.90955 0.94032 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.29 10.79 21.45 0.23 -46.06 16 2 C 0.04 1.81 5.30 84.65 0.45 2.26 16 3 Si 0.96 40.99 29.54 68.60 2.03 43.01 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -29.63 8.25 25.60 0.21 -29.42 16 8 H 0.06 2.93 7.77 -2.91 -0.02 2.91 16 9 C 0.23 11.41 0.89 -10.06 -0.01 11.40 16 10 O -0.60 -31.27 13.18 -148.98 -1.96 -33.23 16 11 C -0.13 -5.43 5.66 31.87 0.18 -5.25 16 12 C 0.11 3.57 6.48 86.73 0.56 4.13 16 13 N -0.61 -23.96 3.33 -811.80 -2.70 -26.66 16 14 C 0.51 18.99 7.85 87.66 0.69 19.67 16 15 O -0.60 -27.09 16.24 -3.01 -0.05 -27.13 16 16 C -0.12 -2.99 4.89 29.85 0.15 -2.85 16 17 C -0.09 -2.10 4.33 30.59 0.13 -1.97 16 18 C -0.11 -1.85 3.64 -10.26 -0.04 -1.88 16 19 C -0.14 -2.34 7.65 31.18 0.24 -2.10 16 20 C -0.14 -1.93 8.09 31.18 0.25 -1.68 16 21 C -0.14 -2.26 7.64 31.12 0.24 -2.02 16 22 C 0.12 5.68 6.08 86.86 0.53 6.21 16 23 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 24 H 0.38 20.11 6.93 -74.06 -0.51 19.59 16 25 H 0.06 2.71 8.03 -2.39 -0.02 2.69 16 26 H 0.07 3.14 7.86 -2.39 -0.02 3.12 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 32 H 0.05 1.38 7.83 -2.39 -0.02 1.36 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.31 7.92 -2.39 -0.02 1.29 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.04 2.11 8.04 -2.39 -0.02 2.09 16 41 H 0.07 3.17 8.01 -2.39 -0.02 3.15 16 Total: -1.00 -61.79 331.30 1.61 -60.18 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.49 Total: 33.38 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.58 Total: -3.49 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -2.47 Total: -72.72 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -2.01 Total: -60.36 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -61.79 1.61 -60.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.112 kcal (2) G-P(sol) polarization free energy of solvation -61.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.42 seconds