Wall clock time and date at job start Mon Mar 30 2020 00:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47251 * 2 1 4 4 C 1.35317 * 125.87155 * 125.32590 * 3 2 1 5 5 C 1.35352 * 106.17693 * 180.11507 * 4 3 2 6 6 C 1.50700 * 126.75361 * 179.84844 * 5 4 3 7 7 N 1.46498 * 109.46769 * 94.71485 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47198 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99724 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99850 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00126 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46812 * 90.00373 * 17 15 13 19 19 H 1.48502 * 109.47120 * 209.99579 * 17 15 13 20 20 H 1.48494 * 109.47357 * 330.00298 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 5 4 3 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 5 4 23 23 H 1.08997 * 109.47339 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46841 * 300.00288 * 1 2 3 26 26 H 1.08998 * 109.47402 * 239.99991 * 2 1 3 27 27 H 1.09000 * 109.47186 * 119.99586 * 2 1 3 28 28 H 1.08002 * 126.91295 * 359.96910 * 4 3 2 29 29 H 1.09004 * 109.47210 * 334.71843 * 6 5 4 30 30 H 1.08994 * 109.47121 * 214.71813 * 6 5 4 31 31 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 32 32 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 34 34 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 35 35 H 1.09000 * 109.47211 * 300.00689 * 12 11 10 36 36 H 1.09007 * 109.46376 * 60.00147 * 12 11 10 37 37 H 0.96999 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8804 1.9174 0.8946 5 6 3.0545 3.2074 0.5240 6 6 3.9240 4.2321 1.2060 7 7 5.2360 4.2700 0.5553 8 6 6.1823 5.1225 0.9960 9 8 5.9488 5.8565 1.9368 10 7 7.3874 5.1614 0.3938 11 6 8.4163 6.0877 0.8731 12 6 9.6792 5.9312 0.0237 13 6 10.7373 6.8844 0.5164 14 1 10.5299 7.5363 1.3521 15 6 11.9701 6.9243 -0.0998 16 7 12.8937 7.7558 0.3305 17 14 12.3285 5.7972 -1.5457 18 1 11.9514 6.4789 -2.8099 19 1 13.7770 5.4713 -1.5722 20 1 11.5419 4.5456 -1.4046 21 7 2.3074 3.3925 -0.5701 22 7 1.7059 2.2916 -0.8547 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3359 1.4173 1.7366 29 1 4.0465 3.9641 2.2554 30 1 3.4542 5.2130 1.1340 31 1 5.4221 3.6847 -0.1955 32 1 7.5738 4.5756 -0.3566 33 1 8.0493 7.1110 0.7941 34 1 8.6492 5.8646 1.9144 35 1 10.0460 4.9078 0.1031 36 1 9.4464 6.1540 -1.0177 37 1 13.7609 7.7841 -0.1032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595579588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:50 Heat of formation + Delta-G solvation = 61.673910 kcal Electronic energy + Delta-G solvation = -19088.173185 eV Core-core repulsion = 15902.896294 eV Total energy + Delta-G solvation = -3185.276891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.64883 -39.56591 -36.24427 -35.20308 -34.45753 -32.77241 -31.62645 -31.26587 -29.91589 -26.76812 -25.16632 -24.45908 -22.26855 -21.24763 -20.76212 -20.61509 -18.29144 -17.64397 -16.91911 -16.78377 -15.85398 -15.54081 -15.14791 -15.01409 -14.44472 -14.08122 -13.81274 -13.75983 -13.47344 -13.13441 -12.98836 -12.57975 -12.56653 -12.20597 -11.85112 -11.44036 -11.20191 -11.11228 -10.50851 -10.34655 -10.23959 -9.97239 -9.87041 -9.53622 -9.28190 -9.05505 -8.59360 -8.33513 -6.07721 -4.07398 1.17855 1.88376 2.03032 3.20027 3.27998 3.35329 3.36644 3.56526 3.79934 4.03679 4.18125 4.40750 4.41964 4.46016 4.65452 4.69966 4.89031 4.94364 5.17654 5.25281 5.38474 5.50289 5.69759 5.79977 6.12661 6.15526 6.29998 6.51823 6.64024 6.86738 7.08493 7.29268 7.34038 7.71265 8.15157 8.33428 8.49617 8.94174 8.97865 9.52557 11.05342 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.002811 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.210846 B = 9958.336499 C =10445.238036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.293 5.293 4 C -0.029 4.029 5 C -0.038 4.038 6 C 0.230 3.770 7 N -0.749 5.749 8 C 0.702 3.298 9 O -0.594 6.594 10 N -0.742 5.742 11 C 0.148 3.852 12 C -0.022 4.022 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.267 1.267 21 N -0.252 5.252 22 N -0.083 5.083 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.194 0.806 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.391 0.609 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.017 0.983 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.632 -20.277 -0.568 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.087 5.087 4 C -0.181 4.181 5 C -0.176 4.176 6 C 0.103 3.897 7 N -0.406 5.406 8 C 0.402 3.598 9 O -0.472 6.472 10 N -0.395 5.395 11 C 0.026 3.974 12 C -0.060 4.060 13 C -0.559 4.559 14 H 0.095 0.905 15 C -0.134 4.134 16 N -0.537 5.537 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 N -0.119 5.119 22 N -0.062 5.062 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.211 0.789 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.224 0.776 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.481 -19.205 -0.962 31.130 hybrid contribution 1.085 -1.584 -0.551 1.998 sum -23.396 -20.789 -1.513 31.334 Atomic orbital electron populations 1.22089 0.92512 1.03850 1.04171 1.22144 0.97102 0.76285 1.05456 1.47537 1.30224 1.12151 1.18778 1.23530 0.99345 0.95444 0.99791 1.22020 1.03505 0.94612 0.97466 1.19120 0.79869 0.96139 0.94535 1.45085 1.13265 1.43930 1.38349 1.15961 0.80487 0.80720 0.82679 1.90913 1.80663 1.45123 1.30530 1.45511 1.12959 1.44263 1.36795 1.21380 0.86094 0.91397 0.98566 1.19802 0.92803 0.97964 0.95422 1.20926 0.96252 1.21009 1.17738 0.90549 1.25004 0.96033 0.95275 0.97049 1.69906 1.05245 1.37024 1.41562 0.86743 0.77424 0.81713 0.83123 1.20251 1.21343 1.19126 1.75153 1.07971 1.15795 1.12997 1.78319 1.20649 0.92782 1.14478 0.90568 0.89756 0.91637 0.88119 0.87482 0.78920 0.89813 0.89793 0.77235 0.77588 0.92091 0.92107 0.96068 0.96454 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.04 37.16 0.37 -0.13 16 2 C 0.11 0.34 7.17 -4.05 -0.03 0.31 16 3 N -0.29 -2.21 3.44 -61.27 -0.21 -2.42 16 4 C -0.03 -0.21 11.50 -17.04 -0.20 -0.41 16 5 C -0.04 -0.39 6.61 -82.78 -0.55 -0.94 16 6 C 0.23 2.62 6.23 -5.19 -0.03 2.58 16 7 N -0.75 -9.55 5.55 -66.41 -0.37 -9.92 16 8 C 0.70 12.03 8.57 -86.92 -0.74 11.28 16 9 O -0.59 -12.55 16.34 5.28 0.09 -12.46 16 10 N -0.74 -12.67 5.56 -65.22 -0.36 -13.03 16 11 C 0.15 3.11 5.61 -4.04 -0.02 3.08 16 12 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 13 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 14 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 21 N -0.25 -3.24 12.41 33.29 0.41 -2.83 16 22 N -0.08 -0.93 12.91 60.35 0.78 -0.15 16 23 H 0.08 0.36 8.12 -51.93 -0.42 -0.07 16 24 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.11 0.04 8.07 -51.93 -0.42 -0.38 16 28 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.39 4.25 8.48 -40.82 -0.35 3.90 16 32 H 0.39 5.59 8.49 -40.82 -0.35 5.24 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 36 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -36.38 322.70 -5.71 -42.09 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.27 Total: 2.09 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.75 Total: 1.96 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 1.02 Total: -55.13 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.38 -5.71 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.766 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds