Wall clock time and date at job start Mon Mar 30 2020 00:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47251 * 2 1 4 4 C 1.35317 * 125.87155 * 125.32590 * 3 2 1 5 5 C 1.35352 * 106.17693 * 180.11507 * 4 3 2 6 6 C 1.50700 * 126.75361 * 179.84844 * 5 4 3 7 7 N 1.46498 * 109.46769 * 94.71485 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47198 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99724 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99850 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00126 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46812 * 90.00373 * 17 15 13 19 19 H 1.48502 * 109.47120 * 209.99579 * 17 15 13 20 20 H 1.48494 * 109.47357 * 330.00298 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 5 4 3 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 5 4 23 23 H 1.08997 * 109.47339 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46841 * 300.00288 * 1 2 3 26 26 H 1.08998 * 109.47402 * 239.99991 * 2 1 3 27 27 H 1.09000 * 109.47186 * 119.99586 * 2 1 3 28 28 H 1.08002 * 126.91295 * 359.96910 * 4 3 2 29 29 H 1.09004 * 109.47210 * 334.71843 * 6 5 4 30 30 H 1.08994 * 109.47121 * 214.71813 * 6 5 4 31 31 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 32 32 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 34 34 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 35 35 H 1.09000 * 109.47211 * 300.00689 * 12 11 10 36 36 H 1.09007 * 109.46376 * 60.00147 * 12 11 10 37 37 H 0.96999 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8804 1.9174 0.8946 5 6 3.0545 3.2074 0.5240 6 6 3.9240 4.2321 1.2060 7 7 5.2360 4.2700 0.5553 8 6 6.1823 5.1225 0.9960 9 8 5.9488 5.8565 1.9368 10 7 7.3874 5.1614 0.3938 11 6 8.4163 6.0877 0.8731 12 6 9.6792 5.9312 0.0237 13 6 10.7373 6.8844 0.5164 14 1 10.5299 7.5363 1.3521 15 6 11.9701 6.9243 -0.0998 16 7 12.8937 7.7558 0.3305 17 14 12.3285 5.7972 -1.5457 18 1 11.9514 6.4789 -2.8099 19 1 13.7770 5.4713 -1.5722 20 1 11.5419 4.5456 -1.4046 21 7 2.3074 3.3925 -0.5701 22 7 1.7059 2.2916 -0.8547 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3359 1.4173 1.7366 29 1 4.0465 3.9641 2.2554 30 1 3.4542 5.2130 1.1340 31 1 5.4221 3.6847 -0.1955 32 1 7.5738 4.5756 -0.3566 33 1 8.0493 7.1110 0.7941 34 1 8.6492 5.8646 1.9144 35 1 10.0460 4.9078 0.1031 36 1 9.4464 6.1540 -1.0177 37 1 13.7609 7.7841 -0.1032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595579588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:49 Heat of formation + Delta-G solvation = 32.165411 kcal Electronic energy + Delta-G solvation = -19089.452769 eV Core-core repulsion = 15902.896294 eV Total energy + Delta-G solvation = -3186.556475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.31731 -40.93703 -37.08110 -36.48456 -35.63334 -34.76109 -32.67719 -31.82221 -31.47357 -27.91124 -26.19674 -25.57699 -22.94833 -22.62946 -22.02021 -21.81167 -19.54236 -18.88217 -18.29751 -17.49443 -17.04774 -16.77237 -16.28083 -15.91230 -15.57994 -15.35263 -15.21694 -15.16988 -14.58226 -14.25778 -13.95389 -13.63550 -13.31707 -13.10580 -12.98827 -12.70410 -12.37173 -12.14633 -12.13581 -11.80848 -11.74148 -11.53424 -11.35473 -11.06662 -10.76716 -10.36300 -10.33467 -9.72495 -8.27688 -6.34533 0.57881 1.16340 1.40766 1.43067 1.46396 1.54391 2.01233 2.19319 2.38739 3.07282 3.20664 3.44295 3.63570 3.85889 3.98246 4.11487 4.30380 4.37490 4.41018 4.49662 4.59495 4.75088 4.77419 4.79767 4.94836 5.03488 5.18754 5.23819 5.43114 5.45096 5.47692 5.65907 5.69575 6.02568 6.25990 6.72825 7.13174 7.29641 7.44676 7.61159 8.89054 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.002811 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.210846 B = 9958.336499 C =10445.238036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.004 4.004 5 C -0.058 4.058 6 C 0.233 3.767 7 N -0.728 5.728 8 C 0.702 3.298 9 O -0.637 6.637 10 N -0.732 5.732 11 C 0.164 3.836 12 C -0.012 4.012 13 C -0.537 4.537 14 H 0.030 0.970 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.236 1.236 21 N -0.295 5.295 22 N -0.112 5.112 23 H 0.052 0.948 24 H 0.109 0.891 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.236 0.764 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.408 0.592 32 H 0.409 0.591 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.403 -24.051 -1.573 34.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.078 5.078 4 C -0.157 4.157 5 C -0.197 4.197 6 C 0.108 3.892 7 N -0.385 5.385 8 C 0.401 3.599 9 O -0.519 6.519 10 N -0.387 5.387 11 C 0.040 3.960 12 C -0.050 4.050 13 C -0.576 4.576 14 H 0.048 0.952 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.159 1.159 21 N -0.162 5.162 22 N -0.092 5.092 23 H 0.072 0.928 24 H 0.128 0.872 25 H 0.075 0.925 26 H 0.131 0.869 27 H 0.163 0.837 28 H 0.253 0.747 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.243 0.757 32 H 0.245 0.755 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.320 -23.044 -2.014 34.296 hybrid contribution 1.243 -0.426 -0.140 1.321 sum -24.077 -23.470 -2.154 33.693 Atomic orbital electron populations 1.22076 0.92676 1.05009 1.02600 1.22636 0.97021 0.74223 1.07926 1.47944 1.29233 1.12987 1.17630 1.24082 0.97690 0.94243 0.99715 1.21908 1.04203 0.95766 0.97790 1.19107 0.78964 0.95808 0.95368 1.44910 1.12781 1.42574 1.38203 1.16050 0.80822 0.80817 0.82170 1.90890 1.81434 1.47005 1.32536 1.45123 1.12330 1.43922 1.37343 1.20888 0.86354 0.91244 0.97531 1.19651 0.91988 0.97242 0.96121 1.21258 0.98175 1.21452 1.16685 0.95171 1.26084 0.95572 0.97141 1.00636 1.70078 1.05999 1.39336 1.43661 0.85527 0.77546 0.80241 0.78468 1.19268 1.21248 1.15901 1.75090 1.09300 1.17185 1.14585 1.78246 1.21633 0.93273 1.16002 0.92834 0.87217 0.92484 0.86916 0.83749 0.74730 0.88315 0.91869 0.75684 0.75513 0.94162 0.93660 0.94337 0.94865 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.04 71.98 0.72 0.08 16 2 C 0.10 0.28 7.17 86.38 0.62 0.90 16 3 N -0.28 -3.56 3.44 -347.75 -1.20 -4.76 16 4 C 0.00 -0.05 11.50 83.49 0.96 0.91 16 5 C -0.06 -1.10 6.61 41.60 0.28 -0.83 16 6 C 0.23 5.04 6.23 85.63 0.53 5.58 16 7 N -0.73 -17.31 5.55 -482.30 -2.68 -19.99 16 8 C 0.70 23.32 8.57 179.05 1.53 24.85 16 9 O -0.64 -27.00 16.34 -4.01 -0.07 -27.06 16 10 N -0.73 -23.80 5.56 -478.52 -2.66 -26.46 16 11 C 0.16 6.86 5.61 86.38 0.48 7.35 16 12 C -0.01 -0.55 4.16 29.85 0.12 -0.42 16 13 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 14 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 15 C 0.00 0.15 5.47 84.65 0.46 0.61 16 16 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 17 Si 0.96 42.66 27.47 68.60 1.88 44.54 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 21 N -0.29 -7.45 12.41 -48.60 -0.60 -8.05 16 22 N -0.11 -2.42 12.91 37.02 0.48 -1.95 16 23 H 0.05 0.46 8.12 -2.39 -0.02 0.44 16 24 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.14 -0.63 8.07 -2.39 -0.02 -0.65 16 28 H 0.24 0.47 8.06 -2.91 -0.02 0.44 16 29 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.41 7.75 8.48 -92.71 -0.79 6.97 16 32 H 0.41 10.44 8.49 -92.71 -0.79 9.65 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.04 1.61 7.20 -2.39 -0.02 1.60 16 36 H 0.03 1.40 7.57 -2.38 -0.02 1.38 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.87 322.70 0.89 -81.98 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.54 Total: 12.75 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.96 Total: 8.35 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.36 Total: -120.56 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.07 Total: -27.06 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -82.87 0.89 -81.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.147 kcal (2) G-P(sol) polarization free energy of solvation -82.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds