Wall clock time and date at job start Mon Mar 30 2020 00:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47224 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00042 * 2 1 3 5 5 N 1.46901 * 109.47187 * 120.00244 * 2 1 3 6 6 C 1.46894 * 111.00176 * 208.66275 * 5 2 1 7 7 C 1.53002 * 109.47059 * 91.12629 * 6 5 2 8 8 C 1.50707 * 109.46963 * 185.47478 * 7 6 5 9 9 H 1.07997 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99655 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00457 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99868 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46872 * 89.99948 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00312 * 12 10 8 15 15 H 1.48504 * 109.46950 * 330.00357 * 12 10 8 16 16 C 1.46895 * 111.00142 * 84.70540 * 5 2 1 17 17 C 1.50704 * 109.47577 * 291.16231 * 16 5 2 18 18 C 1.38426 * 122.53880 * 104.43533 * 17 16 5 19 19 C 1.33385 * 114.91650 * 179.97438 * 18 17 16 20 20 S 1.75876 * 109.60042 * 0.02562 * 19 18 17 21 21 C 1.33392 * 122.53923 * 284.42214 * 17 16 5 22 22 H 1.09000 * 109.47574 * 305.60311 * 1 2 3 23 23 H 1.09002 * 109.47114 * 65.59863 * 1 2 3 24 24 H 1.09000 * 109.47777 * 185.59649 * 1 2 3 25 25 H 1.09005 * 109.47186 * 180.72355 * 3 2 1 26 26 H 1.08996 * 109.47293 * 300.72461 * 3 2 1 27 27 H 1.09005 * 109.47266 * 60.72886 * 3 2 1 28 28 H 1.08999 * 109.47474 * 310.82257 * 4 2 1 29 29 H 1.08994 * 109.47549 * 70.83030 * 4 2 1 30 30 H 1.09011 * 109.46720 * 190.82947 * 4 2 1 31 31 H 1.08999 * 109.47129 * 211.12346 * 6 5 2 32 32 H 1.08997 * 109.47476 * 331.13003 * 6 5 2 33 33 H 1.09004 * 109.46959 * 305.47214 * 7 6 5 34 34 H 1.09003 * 109.47280 * 65.47512 * 7 6 5 35 35 H 0.96996 * 119.99875 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47157 * 171.16536 * 16 5 2 37 37 H 1.09000 * 109.47258 * 51.16154 * 16 5 2 38 38 H 1.07996 * 122.53674 * 359.71998 * 18 17 16 39 39 H 1.08007 * 125.19620 * 179.97438 * 19 18 17 40 40 H 1.08001 * 125.19818 * 0.05097 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.3296 -0.1705 1.6108 7 6 3.1326 0.9731 2.6079 8 6 4.4670 1.5967 2.9271 9 1 5.3656 1.2151 2.4653 10 6 4.5404 2.6543 3.8086 11 7 3.4461 3.1186 4.3713 12 14 6.1944 3.4268 4.2048 13 1 6.4683 4.5284 3.2474 14 1 6.1697 3.9674 5.5877 15 1 7.2602 2.3985 4.0942 16 6 2.0758 -2.1444 0.9830 17 6 0.6755 -2.6906 0.8733 18 6 0.1133 -3.0607 -0.3363 19 6 -1.1346 -3.5252 -0.2572 20 16 -1.6648 -3.5095 1.4197 21 6 -0.1159 -2.8543 1.9345 22 1 -0.3634 0.5983 0.8355 23 1 -0.3633 0.4246 -0.9359 24 1 -0.3635 -1.0227 0.1002 25 1 3.1299 1.4425 -0.0130 26 1 1.6661 1.9600 -0.8834 27 1 1.6873 1.9525 0.8965 28 1 1.5277 -1.6780 -1.3511 29 1 1.8429 -0.1082 -2.1287 30 1 3.1127 -0.8915 -1.1580 31 1 3.9068 -0.9668 2.0807 32 1 3.8648 0.1985 0.7359 33 1 2.4748 1.7255 2.1725 34 1 2.6850 0.5846 3.5227 35 1 3.4978 3.8629 4.9912 36 1 2.5856 -2.6174 1.8223 37 1 2.6205 -2.3537 0.0623 38 1 0.6433 -2.9757 -1.2734 39 1 -1.7288 -3.8590 -1.0950 40 1 0.1531 -2.6196 2.9539 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595600783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:39 Heat of formation + Delta-G solvation = 52.564395 kcal Electronic energy + Delta-G solvation = -19094.553561 eV Core-core repulsion = 16422.882116 eV Total energy + Delta-G solvation = -2671.671445 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79860 -37.12588 -33.34906 -32.26017 -30.64319 -28.92628 -27.16657 -26.70761 -25.33642 -23.87171 -22.42950 -20.71214 -18.85917 -17.93401 -17.38162 -16.27608 -16.04423 -15.05118 -14.78868 -14.44301 -13.65458 -13.38661 -13.07364 -12.91810 -12.78935 -12.48344 -12.29111 -12.07036 -11.86514 -11.54206 -11.28609 -11.16538 -11.02543 -10.84049 -10.75629 -10.65743 -10.54626 -10.47688 -10.02282 -9.60592 -9.32231 -8.95359 -8.66925 -8.22706 -8.18716 -7.53448 -5.94324 -3.95830 1.14909 1.77721 2.10109 2.80349 3.33890 3.40503 3.43272 4.42401 4.59297 4.99926 5.19542 5.24605 5.33997 5.41721 5.50286 5.56103 5.61459 5.74567 5.87911 5.94541 5.97987 6.07280 6.16963 6.23899 6.27746 6.35584 6.36108 6.49666 6.53585 6.60295 6.65143 6.87720 6.99197 7.12669 7.66892 7.73699 7.86497 8.06110 8.20601 8.50791 9.12460 9.66981 11.16718 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.004700 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.443270 B = 5955.724282 C = 6290.842232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.111 3.889 3 C -0.158 4.158 4 C -0.183 4.183 5 N -0.521 5.521 6 C 0.057 3.943 7 C 0.024 3.976 8 C -0.520 4.520 9 H 0.051 0.949 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.103 3.897 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.222 4.222 20 S 0.069 5.931 21 C -0.183 4.183 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 -12.345 -10.298 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.021 3.979 3 C -0.215 4.215 4 C -0.241 4.241 5 N -0.245 5.245 6 C -0.069 4.069 7 C -0.013 4.013 8 C -0.559 4.559 9 H 0.069 0.931 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.027 4.027 17 C -0.098 4.098 18 C -0.156 4.156 19 C -0.357 4.357 20 S 0.332 5.668 21 C -0.319 4.319 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.083 -12.535 -9.036 18.451 hybrid contribution 2.742 0.806 -1.102 3.063 sum -7.341 -11.729 -10.138 17.154 Atomic orbital electron populations 1.22076 0.94631 1.02745 1.00533 1.20955 0.95151 0.94150 0.87627 1.22405 1.02208 0.94710 1.02129 1.22702 1.01028 1.01389 0.99014 1.62400 1.28926 1.01030 1.32150 1.22509 0.86840 0.98858 0.98713 1.19341 0.96633 0.91848 0.93476 1.21235 0.93609 1.15517 1.25518 0.93091 1.24960 0.96117 0.96994 0.96112 1.69974 1.27062 1.26110 1.30059 0.86671 0.84638 0.79546 0.77579 1.20779 1.21290 1.20002 1.20925 0.91038 0.89868 1.00867 1.18855 0.98206 1.00980 0.91789 1.20203 0.95153 1.01316 0.98903 1.25463 1.00153 1.10424 0.99652 1.84194 1.17210 1.64230 1.01146 1.25455 0.95838 1.07055 1.03524 0.92425 0.93820 0.91362 0.91367 0.93870 0.89852 0.91711 0.92804 0.92926 0.93299 0.94538 0.94716 0.96474 0.93119 0.90340 0.93643 0.84233 0.82348 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.41 37.15 0.31 -1.86 16 2 C 0.11 1.78 0.68 -131.61 -0.09 1.69 16 3 C -0.16 -2.83 6.99 37.15 0.26 -2.57 16 4 C -0.18 -2.49 7.07 37.16 0.26 -2.23 16 5 N -0.52 -9.17 4.24 -220.41 -0.94 -10.11 16 6 C 0.06 1.17 4.48 -3.83 -0.02 1.16 16 7 C 0.02 0.62 4.85 -27.88 -0.14 0.48 16 8 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 9 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 12 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.10 1.53 4.77 -4.98 -0.02 1.51 16 17 C -0.09 -1.16 3.22 -106.24 -0.34 -1.50 16 18 C -0.12 -1.46 7.09 -41.21 -0.29 -1.75 16 19 C -0.22 -2.37 11.09 29.04 0.32 -2.05 16 20 S 0.07 0.79 23.34 -107.50 -2.51 -1.72 16 21 C -0.18 -2.45 10.80 29.04 0.31 -2.13 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.99 3.45 -51.93 -0.18 0.81 16 25 H 0.07 1.31 5.78 -51.93 -0.30 1.01 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.73 5.69 -51.93 -0.30 1.44 16 28 H 0.06 0.79 3.37 -51.93 -0.17 0.61 16 29 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.05 0.74 7.25 -51.92 -0.38 0.36 16 31 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 32 H 0.04 0.75 5.54 -51.93 -0.29 0.46 16 33 H 0.03 0.93 4.81 -51.93 -0.25 0.68 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 37 H 0.05 0.63 5.57 -51.93 -0.29 0.34 16 38 H 0.14 1.46 5.91 -52.49 -0.31 1.15 16 39 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -29.31 311.13 -8.63 -37.94 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.75 Total: 1.15 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.20 Total: -36.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.31 -8.63 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595600783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.506 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds