Wall clock time and date at job start Mon Mar 30 2020 00:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47224 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00042 * 2 1 3 5 5 N 1.46901 * 109.47187 * 120.00244 * 2 1 3 6 6 C 1.46894 * 111.00176 * 208.66275 * 5 2 1 7 7 C 1.53002 * 109.47059 * 91.12629 * 6 5 2 8 8 C 1.50707 * 109.46963 * 185.47478 * 7 6 5 9 9 H 1.07997 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99655 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00457 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99868 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46872 * 89.99948 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00312 * 12 10 8 15 15 H 1.48504 * 109.46950 * 330.00357 * 12 10 8 16 16 C 1.46895 * 111.00142 * 84.70540 * 5 2 1 17 17 C 1.50704 * 109.47577 * 291.16231 * 16 5 2 18 18 C 1.38426 * 122.53880 * 104.43533 * 17 16 5 19 19 C 1.33385 * 114.91650 * 179.97438 * 18 17 16 20 20 S 1.75876 * 109.60042 * 0.02562 * 19 18 17 21 21 C 1.33392 * 122.53923 * 284.42214 * 17 16 5 22 22 H 1.09000 * 109.47574 * 305.60311 * 1 2 3 23 23 H 1.09002 * 109.47114 * 65.59863 * 1 2 3 24 24 H 1.09000 * 109.47777 * 185.59649 * 1 2 3 25 25 H 1.09005 * 109.47186 * 180.72355 * 3 2 1 26 26 H 1.08996 * 109.47293 * 300.72461 * 3 2 1 27 27 H 1.09005 * 109.47266 * 60.72886 * 3 2 1 28 28 H 1.08999 * 109.47474 * 310.82257 * 4 2 1 29 29 H 1.08994 * 109.47549 * 70.83030 * 4 2 1 30 30 H 1.09011 * 109.46720 * 190.82947 * 4 2 1 31 31 H 1.08999 * 109.47129 * 211.12346 * 6 5 2 32 32 H 1.08997 * 109.47476 * 331.13003 * 6 5 2 33 33 H 1.09004 * 109.46959 * 305.47214 * 7 6 5 34 34 H 1.09003 * 109.47280 * 65.47512 * 7 6 5 35 35 H 0.96996 * 119.99875 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47157 * 171.16536 * 16 5 2 37 37 H 1.09000 * 109.47258 * 51.16154 * 16 5 2 38 38 H 1.07996 * 122.53674 * 359.71998 * 18 17 16 39 39 H 1.08007 * 125.19620 * 179.97438 * 19 18 17 40 40 H 1.08001 * 125.19818 * 0.05097 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.3296 -0.1705 1.6108 7 6 3.1326 0.9731 2.6079 8 6 4.4670 1.5967 2.9271 9 1 5.3656 1.2151 2.4653 10 6 4.5404 2.6543 3.8086 11 7 3.4461 3.1186 4.3713 12 14 6.1944 3.4268 4.2048 13 1 6.4683 4.5284 3.2474 14 1 6.1697 3.9674 5.5877 15 1 7.2602 2.3985 4.0942 16 6 2.0758 -2.1444 0.9830 17 6 0.6755 -2.6906 0.8733 18 6 0.1133 -3.0607 -0.3363 19 6 -1.1346 -3.5252 -0.2572 20 16 -1.6648 -3.5095 1.4197 21 6 -0.1159 -2.8543 1.9345 22 1 -0.3634 0.5983 0.8355 23 1 -0.3633 0.4246 -0.9359 24 1 -0.3635 -1.0227 0.1002 25 1 3.1299 1.4425 -0.0130 26 1 1.6661 1.9600 -0.8834 27 1 1.6873 1.9525 0.8965 28 1 1.5277 -1.6780 -1.3511 29 1 1.8429 -0.1082 -2.1287 30 1 3.1127 -0.8915 -1.1580 31 1 3.9068 -0.9668 2.0807 32 1 3.8648 0.1985 0.7359 33 1 2.4748 1.7255 2.1725 34 1 2.6850 0.5846 3.5227 35 1 3.4978 3.8629 4.9912 36 1 2.5856 -2.6174 1.8223 37 1 2.6205 -2.3537 0.0623 38 1 0.6433 -2.9757 -1.2734 39 1 -1.7288 -3.8590 -1.0950 40 1 0.1531 -2.6196 2.9539 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595600783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:39 Heat of formation + Delta-G solvation = 35.688654 kcal Electronic energy + Delta-G solvation = -19095.285348 eV Core-core repulsion = 16422.882116 eV Total energy + Delta-G solvation = -2672.403232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02588 -38.27010 -35.35122 -33.71774 -32.25815 -30.10538 -28.60009 -28.06799 -26.63164 -25.65614 -23.46520 -22.55462 -20.00989 -19.15732 -18.47662 -18.23074 -17.35234 -16.53952 -16.25653 -16.01860 -14.97292 -14.60179 -14.51761 -14.32743 -13.93521 -13.79764 -13.65077 -13.50553 -13.19021 -12.97437 -12.87846 -12.73821 -12.50071 -12.45044 -12.20327 -12.11256 -11.82034 -11.66694 -11.50198 -11.38330 -11.17342 -10.94291 -10.40307 -9.60911 -9.15610 -8.92084 -8.14643 -6.24452 0.21307 0.86023 1.17641 1.40294 1.41441 1.52145 1.82061 2.42727 3.18392 3.20546 4.00242 4.05575 4.11971 4.18985 4.36560 4.40078 4.50132 4.59832 4.65193 4.68093 4.77054 4.82895 4.89058 4.95031 4.96749 5.09533 5.09860 5.23134 5.26558 5.32645 5.40823 5.54877 5.56736 5.62928 5.69174 5.84081 5.98553 6.23843 6.46269 6.51646 6.94717 7.43469 8.97010 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.004700 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.443270 B = 5955.724282 C = 6290.842232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 C -0.151 4.151 4 C -0.176 4.176 5 N -0.537 5.537 6 C 0.076 3.924 7 C 0.033 3.967 8 C -0.537 4.537 9 H 0.056 0.944 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.104 3.896 17 C -0.089 4.089 18 C -0.136 4.136 19 C -0.208 4.208 20 S 0.087 5.913 21 C -0.210 4.210 22 H 0.030 0.970 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.018 0.982 34 H -0.023 1.023 35 H 0.261 0.739 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.158 0.842 39 H 0.190 0.810 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 -13.507 -12.553 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 C -0.209 4.209 4 C -0.234 4.234 5 N -0.261 5.261 6 C -0.051 4.051 7 C -0.005 4.005 8 C -0.576 4.576 9 H 0.074 0.926 10 C -0.195 4.195 11 N -0.573 5.573 12 Si 0.784 3.216 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.188 1.188 16 C -0.026 4.026 17 C -0.102 4.102 18 C -0.167 4.167 19 C -0.343 4.343 20 S 0.351 5.649 21 C -0.347 4.347 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.036 0.964 34 H -0.004 1.004 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.175 0.825 39 H 0.207 0.793 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.051 -13.716 -11.305 20.419 hybrid contribution 2.630 1.143 -0.383 2.893 sum -7.421 -12.573 -11.688 18.702 Atomic orbital electron populations 1.22040 0.93826 1.03091 1.00488 1.21023 0.95703 0.92967 0.88364 1.22301 1.01024 0.96274 1.01254 1.22621 1.00777 1.02229 0.97780 1.62249 1.27025 1.02970 1.33860 1.22079 0.88547 0.97053 0.97471 1.19192 0.95231 0.93094 0.92966 1.21657 0.94599 1.15786 1.25553 0.92559 1.25884 1.00085 0.97592 0.95924 1.70122 1.29584 1.26755 1.30805 0.85535 0.79862 0.78778 0.77383 1.19833 1.20990 1.18829 1.20933 0.92544 0.87752 1.01347 1.18833 0.97363 1.01262 0.92763 1.20273 0.95701 1.02035 0.98654 1.25859 0.99891 1.08675 0.99856 1.84152 1.15483 1.63394 1.01902 1.25503 0.97588 1.08303 1.03262 0.95111 0.91729 0.90283 0.93017 0.91533 0.93695 0.89772 0.91222 0.93384 0.93296 0.94210 0.96410 1.00440 0.93019 0.91159 0.91933 0.82451 0.79282 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.41 71.98 0.61 -3.41 16 2 C 0.11 3.40 0.68 3.52 0.00 3.41 16 3 C -0.15 -5.50 6.99 71.98 0.50 -4.99 16 4 C -0.18 -4.29 7.07 71.98 0.51 -3.78 16 5 N -0.54 -19.11 4.24 -851.26 -3.61 -22.73 16 6 C 0.08 3.20 4.48 86.30 0.39 3.58 16 7 C 0.03 1.75 4.85 29.85 0.14 1.90 16 8 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 9 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 10 C 0.00 0.16 5.46 84.65 0.46 0.62 16 11 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 12 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 16 C 0.10 3.00 4.77 85.56 0.41 3.41 16 17 C -0.09 -2.28 3.22 -20.92 -0.07 -2.35 16 18 C -0.14 -2.75 7.09 21.22 0.15 -2.60 16 19 C -0.21 -3.70 11.09 66.72 0.74 -2.96 16 20 S 0.09 1.83 23.34 -56.49 -1.32 0.51 16 21 C -0.21 -5.58 10.80 66.72 0.72 -4.86 16 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.08 2.14 3.45 -2.39 -0.01 2.13 16 25 H 0.05 2.01 5.78 -2.38 -0.01 2.00 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.97 5.69 -2.38 -0.01 1.95 16 28 H 0.08 1.72 3.37 -2.39 -0.01 1.71 16 29 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.05 1.23 7.25 -2.38 -0.02 1.21 16 31 H 0.05 2.03 7.45 -2.39 -0.02 2.01 16 32 H 0.04 1.65 5.54 -2.39 -0.01 1.63 16 33 H 0.02 1.02 4.81 -2.38 -0.01 1.01 16 34 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.07 2.11 7.71 -2.39 -0.02 2.10 16 37 H 0.06 1.59 5.57 -2.39 -0.01 1.58 16 38 H 0.16 2.60 5.91 -2.91 -0.02 2.59 16 39 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -65.15 311.13 3.21 -61.94 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.03 Total: 13.60 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.80 Total: -42.66 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -3.33 Total: -80.28 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -65.15 3.21 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595600783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.624 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds