Wall clock time and date at job start Mon Mar 30 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37102 * 120.00090 * 2 1 4 4 H 1.08000 * 119.99984 * 204.38942 * 3 2 1 5 5 C 1.38955 * 119.99814 * 24.39527 * 3 2 1 6 6 N 1.31415 * 119.99858 * 12.63803 * 5 3 2 7 7 Si 1.86801 * 119.99599 * 192.63675 * 5 3 2 8 8 H 1.48499 * 109.47031 * 90.00161 * 7 5 3 9 9 H 1.48502 * 109.46934 * 209.99973 * 7 5 3 10 10 H 1.48490 * 109.47238 * 329.99849 * 7 5 3 11 11 C 1.34774 * 119.99555 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99747 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00367 * 0.02562 * 11 2 1 14 14 C 1.50702 * 109.46891 * 179.97438 * 13 11 2 15 15 N 1.33318 * 126.54775 * 89.97804 * 14 13 11 16 16 N 1.28998 * 107.35317 * 179.97438 * 15 14 13 17 17 N 1.28779 * 108.72765 * 359.97438 * 16 15 14 18 18 C 1.46494 * 125.45259 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46705 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.47105 * 240.02869 * 18 17 16 21 21 C 1.53000 * 109.47503 * 120.02277 * 18 17 16 22 22 N 1.28889 * 109.10051 * 0.23088 * 17 16 15 23 23 H 1.09003 * 109.47355 * 265.86280 * 1 2 3 24 24 H 1.09008 * 109.47205 * 25.86165 * 1 2 3 25 25 H 1.08995 * 109.47508 * 145.85897 * 1 2 3 26 26 H 0.96999 * 119.99235 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47212 * 59.99753 * 13 11 2 28 28 H 1.09004 * 109.46701 * 299.99422 * 13 11 2 29 29 H 1.08990 * 109.47477 * 300.00059 * 19 18 17 30 30 H 1.09009 * 109.46898 * 180.02562 * 19 18 17 31 31 H 1.09000 * 109.47292 * 60.00710 * 19 18 17 32 32 H 1.09000 * 109.47079 * 179.97438 * 20 18 17 33 33 H 1.08997 * 109.46713 * 299.99305 * 20 18 17 34 34 H 1.08999 * 109.47408 * 59.99050 * 20 18 17 35 35 H 1.08996 * 109.46747 * 299.99808 * 21 18 17 36 36 H 1.08995 * 109.46705 * 60.00133 * 21 18 17 37 37 H 1.09005 * 109.46802 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1583 1.2290 -0.3862 5 6 1.5488 2.3370 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3239 4.0073 0.1828 8 1 1.7871 4.5721 -1.0814 9 1 2.0036 4.9213 1.3085 10 1 3.7969 3.8564 0.0715 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6177 0.0005 15 7 2.8809 -4.2209 1.0715 16 7 3.6720 -5.1473 0.6474 17 7 3.6641 -5.1402 -0.6403 18 6 4.4346 -6.0423 -1.4997 19 6 5.2534 -6.9990 -0.6306 20 6 5.3772 -5.2232 -2.3839 21 6 3.4781 -6.8470 -2.3821 22 7 2.8741 -4.2089 -1.0521 23 1 -0.3634 -0.0741 1.0250 24 1 -0.3634 0.9248 -0.4483 25 1 -0.3634 -0.8505 -0.5767 26 1 0.0147 3.0516 1.5354 27 1 0.7590 -2.5302 -0.8896 28 1 0.7584 -2.5298 0.8904 29 1 5.9347 -6.4260 -0.0020 30 1 5.8270 -7.6701 -1.2701 31 1 4.5819 -7.5826 -0.0008 32 1 5.9508 -5.8945 -3.0230 33 1 4.7939 -4.5417 -3.0030 34 1 6.0586 -4.6500 -1.7552 35 1 2.8068 -7.4305 -1.7522 36 1 2.8949 -6.1654 -3.0012 37 1 4.0515 -7.5185 -3.0212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:16 Heat of formation + Delta-G solvation = 95.751294 kcal Electronic energy + Delta-G solvation = -20544.074352 eV Core-core repulsion = 17360.275168 eV Total energy + Delta-G solvation = -3183.799184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.92126 -38.46584 -37.56796 -34.70129 -33.08316 -32.73545 -31.58860 -29.04854 -27.77492 -27.63263 -26.15815 -24.45516 -24.16739 -22.07140 -20.42645 -18.97202 -17.04498 -16.93324 -16.77687 -15.86930 -14.79084 -14.60131 -14.39728 -14.27581 -14.17373 -13.68094 -13.22239 -13.07266 -12.73529 -12.55078 -12.29138 -12.18574 -12.08398 -11.72517 -11.64274 -11.47618 -11.29496 -11.22124 -11.07588 -10.84521 -10.49572 -10.42041 -10.33336 -10.23369 -9.72715 -8.98521 -8.39785 -7.64237 -6.29880 -3.86106 1.64724 2.11719 2.66403 3.18687 3.27466 3.33374 3.88802 4.01643 4.16283 4.33554 4.42843 4.44433 4.92401 5.00899 5.13861 5.16647 5.18546 5.27398 5.33963 5.41492 5.44023 5.68742 5.70880 5.85155 5.85921 5.91813 6.01661 6.22040 6.26684 6.40681 6.59901 6.86792 7.21748 7.59697 8.15588 8.50709 8.83271 9.20581 9.42834 9.98609 10.75237 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.004234 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.508247 B = 6610.931668 C = 6886.594558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.444 5.444 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.881 5.881 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.456 3.544 12 O -0.582 6.582 13 C -0.039 4.039 14 C 0.207 3.793 15 N -0.278 5.278 16 N -0.072 5.072 17 N -0.138 5.138 18 C 0.181 3.819 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.156 4.156 22 N -0.302 5.302 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.268 0.732 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -16.277 -7.285 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.163 5.163 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.521 5.521 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.242 3.758 12 O -0.467 6.467 13 C -0.082 4.082 14 C -0.076 4.076 15 N -0.149 5.149 16 N -0.065 5.065 17 N -0.052 5.052 18 C 0.099 3.901 19 C -0.209 4.209 20 C -0.217 4.217 21 C -0.215 4.215 22 N -0.152 5.152 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.212 -16.611 -6.956 18.293 hybrid contribution -0.173 1.353 -0.191 1.377 sum 3.039 -15.258 -7.146 17.120 Atomic orbital electron populations 1.21539 0.81082 1.00098 1.00810 1.43503 1.05506 1.04446 1.62864 1.19636 1.00637 0.83955 1.39026 0.88504 1.25340 0.96663 1.00093 0.95111 1.69993 1.19220 1.29610 1.33250 0.85920 0.79654 0.81294 0.77809 1.20369 1.20926 1.19419 1.19611 0.87924 0.84171 0.84126 1.90543 1.13881 1.86885 1.55348 1.19930 0.94670 0.88412 1.05235 1.24856 0.99722 0.98783 0.84189 1.75778 1.08213 1.04706 1.26234 1.78804 1.16567 1.16915 0.94213 1.50303 1.28234 1.21853 1.04762 1.21239 0.91105 0.88104 0.89609 1.22060 1.00282 0.98595 0.99979 1.22222 0.99060 1.00695 0.99755 1.22204 0.99355 1.00256 0.99667 1.74533 1.08917 1.03760 1.27979 0.92732 0.90543 0.95457 0.92236 0.87677 0.87075 0.90626 0.89618 0.90747 0.89605 0.90335 0.91296 0.91576 0.90431 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.44 59.85 0.51 2.89 16 2 N -0.44 -11.55 3.01 -122.19 -0.37 -11.92 16 3 C -0.30 -8.64 9.24 -14.93 -0.14 -8.78 16 4 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 5 C 0.03 0.83 5.04 -17.46 -0.09 0.74 16 6 N -0.88 -23.66 10.83 55.50 0.60 -23.05 16 7 Si 0.93 21.03 29.57 -169.99 -5.03 16.00 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 C 0.46 11.53 7.62 -10.99 -0.08 11.45 16 12 O -0.58 -17.08 15.75 5.54 0.09 -17.00 16 13 C -0.04 -0.77 4.93 -29.03 -0.14 -0.91 16 14 C 0.21 4.25 6.86 -156.62 -1.07 3.17 16 15 N -0.28 -5.87 12.50 32.45 0.41 -5.46 16 16 N -0.07 -1.34 12.24 60.35 0.74 -0.60 16 17 N -0.14 -2.26 3.73 0.48 0.00 -2.26 16 18 C 0.18 1.99 1.30 -131.82 -0.17 1.82 16 19 C -0.15 -1.31 7.91 37.16 0.29 -1.01 16 20 C -0.16 -1.62 8.66 37.16 0.32 -1.30 16 21 C -0.16 -1.32 8.67 37.16 0.32 -1.00 16 22 N -0.30 -5.67 11.83 32.47 0.38 -5.29 16 23 H 0.05 1.22 7.83 -51.93 -0.41 0.82 16 24 H 0.08 1.77 6.80 -51.92 -0.35 1.42 16 25 H 0.03 0.48 6.61 -51.93 -0.34 0.14 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.11 1.74 7.41 -51.93 -0.38 1.36 16 28 H 0.11 1.97 8.11 -51.93 -0.42 1.55 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -34.96 315.24 -3.92 -38.88 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.24 Total: -1.12 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.26 Total: 7.07 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 1.76 Total: -48.58 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.09 Total: -17.00 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.96 -3.92 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.632 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds