Wall clock time and date at job start Mon Mar 30 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37102 * 120.00090 * 2 1 4 4 H 1.08000 * 119.99984 * 204.38942 * 3 2 1 5 5 C 1.38955 * 119.99814 * 24.39527 * 3 2 1 6 6 N 1.31415 * 119.99858 * 12.63803 * 5 3 2 7 7 Si 1.86801 * 119.99599 * 192.63675 * 5 3 2 8 8 H 1.48499 * 109.47031 * 90.00161 * 7 5 3 9 9 H 1.48502 * 109.46934 * 209.99973 * 7 5 3 10 10 H 1.48490 * 109.47238 * 329.99849 * 7 5 3 11 11 C 1.34774 * 119.99555 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99747 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00367 * 0.02562 * 11 2 1 14 14 C 1.50702 * 109.46891 * 179.97438 * 13 11 2 15 15 N 1.33318 * 126.54775 * 89.97804 * 14 13 11 16 16 N 1.28998 * 107.35317 * 179.97438 * 15 14 13 17 17 N 1.28779 * 108.72765 * 359.97438 * 16 15 14 18 18 C 1.46494 * 125.45259 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46705 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.47105 * 240.02869 * 18 17 16 21 21 C 1.53000 * 109.47503 * 120.02277 * 18 17 16 22 22 N 1.28889 * 109.10051 * 0.23088 * 17 16 15 23 23 H 1.09003 * 109.47355 * 265.86280 * 1 2 3 24 24 H 1.09008 * 109.47205 * 25.86165 * 1 2 3 25 25 H 1.08995 * 109.47508 * 145.85897 * 1 2 3 26 26 H 0.96999 * 119.99235 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47212 * 59.99753 * 13 11 2 28 28 H 1.09004 * 109.46701 * 299.99422 * 13 11 2 29 29 H 1.08990 * 109.47477 * 300.00059 * 19 18 17 30 30 H 1.09009 * 109.46898 * 180.02562 * 19 18 17 31 31 H 1.09000 * 109.47292 * 60.00710 * 19 18 17 32 32 H 1.09000 * 109.47079 * 179.97438 * 20 18 17 33 33 H 1.08997 * 109.46713 * 299.99305 * 20 18 17 34 34 H 1.08999 * 109.47408 * 59.99050 * 20 18 17 35 35 H 1.08996 * 109.46747 * 299.99808 * 21 18 17 36 36 H 1.08995 * 109.46705 * 60.00133 * 21 18 17 37 37 H 1.09005 * 109.46802 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1583 1.2290 -0.3862 5 6 1.5488 2.3370 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3239 4.0073 0.1828 8 1 1.7871 4.5721 -1.0814 9 1 2.0036 4.9213 1.3085 10 1 3.7969 3.8564 0.0715 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6177 0.0005 15 7 2.8809 -4.2209 1.0715 16 7 3.6720 -5.1473 0.6474 17 7 3.6641 -5.1402 -0.6403 18 6 4.4346 -6.0423 -1.4997 19 6 5.2534 -6.9990 -0.6306 20 6 5.3772 -5.2232 -2.3839 21 6 3.4781 -6.8470 -2.3821 22 7 2.8741 -4.2089 -1.0521 23 1 -0.3634 -0.0741 1.0250 24 1 -0.3634 0.9248 -0.4483 25 1 -0.3634 -0.8505 -0.5767 26 1 0.0147 3.0516 1.5354 27 1 0.7590 -2.5302 -0.8896 28 1 0.7584 -2.5298 0.8904 29 1 5.9347 -6.4260 -0.0020 30 1 5.8270 -7.6701 -1.2701 31 1 4.5819 -7.5826 -0.0008 32 1 5.9508 -5.8945 -3.0230 33 1 4.7939 -4.5417 -3.0030 34 1 6.0586 -4.6500 -1.7552 35 1 2.8068 -7.4305 -1.7522 36 1 2.8949 -6.1654 -3.0012 37 1 4.0515 -7.5185 -3.0212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:16 Heat of formation + Delta-G solvation = 70.710944 kcal Electronic energy + Delta-G solvation = -20545.160183 eV Core-core repulsion = 17360.275168 eV Total energy + Delta-G solvation = -3184.885015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.32908 -40.39043 -38.57000 -36.71472 -34.57682 -34.15200 -33.56768 -30.59280 -28.51475 -28.46162 -28.00676 -26.32301 -25.53934 -23.62367 -21.60142 -20.78657 -18.92479 -18.42206 -17.96568 -17.66205 -16.61089 -16.21115 -16.19770 -15.40749 -15.16567 -15.14214 -14.71080 -14.23132 -14.13536 -13.76774 -13.43148 -13.34449 -13.20739 -13.12316 -13.04055 -12.85354 -12.83882 -12.61977 -12.53660 -12.30528 -12.14601 -12.12784 -11.90615 -11.80836 -11.16464 -10.99796 -10.39576 -9.67997 -8.34633 -6.00025 0.25752 0.99476 1.12917 1.37272 1.41334 1.53478 1.98002 2.28271 2.78226 3.07218 3.12711 3.26046 3.54233 3.62582 3.70163 4.02640 4.28085 4.43634 4.47768 4.50941 4.54112 4.61586 4.66464 4.72782 4.74346 4.76197 4.85251 5.02543 5.07389 5.12697 5.24061 5.41194 5.41401 5.44667 6.08990 6.47210 7.14970 7.38237 7.42914 7.98863 8.68403 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.004234 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.508247 B = 6610.931668 C = 6886.594558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.456 5.456 3 C -0.345 4.345 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.892 5.892 7 Si 0.989 3.011 8 H -0.262 1.262 9 H -0.272 1.272 10 H -0.280 1.280 11 C 0.445 3.555 12 O -0.634 6.634 13 C -0.026 4.026 14 C 0.187 3.813 15 N -0.314 5.314 16 N -0.078 5.078 17 N -0.120 5.120 18 C 0.159 3.841 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.150 4.150 22 N -0.307 5.307 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.275 0.725 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -17.527 -8.561 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.175 5.175 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.813 3.187 8 H -0.187 1.187 9 H -0.197 1.197 10 H -0.205 1.205 11 C 0.233 3.767 12 O -0.522 6.522 13 C -0.069 4.069 14 C -0.096 4.096 15 N -0.184 5.184 16 N -0.070 5.070 17 N -0.037 5.037 18 C 0.080 3.920 19 C -0.205 4.205 20 C -0.214 4.214 21 C -0.208 4.208 22 N -0.157 5.157 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.780 -17.874 -8.221 19.870 hybrid contribution 0.021 1.660 0.156 1.667 sum 2.801 -16.214 -8.065 18.325 Atomic orbital electron populations 1.21574 0.78763 1.01422 1.01099 1.43769 1.07034 1.04155 1.62523 1.19562 1.00391 0.86017 1.41351 0.91534 1.26066 0.97035 1.02826 0.94181 1.70055 1.19542 1.30858 1.32604 0.85006 0.78100 0.77076 0.78566 1.18656 1.19717 1.20524 1.20499 0.87702 0.85763 0.82691 1.90498 1.16380 1.87924 1.57423 1.19861 0.94287 0.84897 1.07836 1.25004 1.00596 0.99494 0.84523 1.75718 1.09447 1.05890 1.27340 1.78699 1.16403 1.16669 0.95276 1.50990 1.26901 1.21072 1.04692 1.22062 0.91816 0.88111 0.90009 1.22131 0.99870 0.98291 1.00225 1.22270 0.98559 1.01107 0.99489 1.22239 0.99158 1.00077 0.99337 1.74478 1.09272 1.04257 1.27738 0.93402 0.92080 0.90643 0.91547 0.84202 0.85025 0.92351 0.85282 0.91012 0.84979 0.92201 0.93546 0.91730 0.91685 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.91 8.44 127.77 1.08 5.99 16 2 N -0.46 -24.05 3.01 -658.87 -1.98 -26.04 16 3 C -0.35 -20.14 9.24 84.04 0.78 -19.36 16 4 H 0.07 4.19 7.45 -2.91 -0.02 4.17 16 5 C 0.00 0.07 5.04 84.93 0.43 0.49 16 6 N -0.89 -47.55 10.83 21.67 0.23 -47.31 16 7 Si 0.99 43.15 29.57 68.60 2.03 45.17 16 8 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 C 0.45 22.94 7.62 87.66 0.67 23.61 16 12 O -0.63 -38.72 15.75 -3.08 -0.05 -38.77 16 13 C -0.03 -1.01 4.93 29.10 0.14 -0.87 16 14 C 0.19 7.67 6.86 138.55 0.95 8.62 16 15 N -0.31 -13.43 12.50 -51.26 -0.64 -14.07 16 16 N -0.08 -2.93 12.24 37.02 0.45 -2.47 16 17 N -0.12 -3.90 3.73 -152.39 -0.57 -4.47 16 18 C 0.16 3.21 1.30 3.61 0.00 3.21 16 19 C -0.15 -2.21 7.91 71.98 0.57 -1.64 16 20 C -0.16 -2.94 8.66 71.98 0.62 -2.32 16 21 C -0.15 -2.10 8.67 71.98 0.62 -1.48 16 22 N -0.31 -11.47 11.83 -51.20 -0.61 -12.07 16 23 H 0.05 2.11 7.83 -2.39 -0.02 2.09 16 24 H 0.06 2.79 6.80 -2.38 -0.02 2.78 16 25 H 0.08 2.48 6.61 -2.39 -0.02 2.46 16 26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.14 4.32 7.41 -2.39 -0.02 4.30 16 28 H 0.13 4.49 8.11 -2.39 -0.02 4.47 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -79.63 315.24 5.80 -73.83 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.07 Total: 9.94 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.87 Total: 16.27 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -3.11 Total: -106.44 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.05 Total: -38.77 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -79.63 5.80 -73.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.542 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds