Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47161 * 274.95481 * 3 2 1 5 5 H 1.48500 * 109.47358 * 34.95677 * 3 2 1 6 6 H 1.48499 * 109.47148 * 154.95894 * 3 2 1 7 7 C 1.37880 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00354 * 5.01293 * 7 2 1 9 9 C 1.50701 * 120.00058 * 185.01453 * 7 2 1 10 10 H 1.09000 * 109.49789 * 325.06729 * 9 7 2 11 11 C 1.53046 * 109.49764 * 85.12375 * 9 7 2 12 12 C 1.53040 * 109.53792 * 181.35355 * 11 9 7 13 13 C 1.53199 * 109.31034 * 298.63699 * 12 11 9 14 14 N 1.46919 * 108.77568 * 54.63592 * 13 12 11 15 15 C 1.34773 * 120.63117 * 126.41622 * 14 13 12 16 16 O 1.21285 * 120.00088 * 184.18954 * 15 14 13 17 17 C 1.50700 * 119.99999 * 4.18450 * 15 14 13 18 18 O 1.42907 * 110.01750 * 305.14853 * 17 15 14 19 19 C 1.54263 * 110.03397 * 183.75963 * 17 15 14 20 20 C 1.54968 * 104.15791 * 217.13600 * 19 17 15 21 21 C 1.54894 * 102.77960 * 37.88572 * 20 19 17 22 22 C 1.53873 * 110.03195 * 66.53867 * 17 15 14 23 23 C 1.46927 * 118.74015 * 306.38737 * 14 13 12 24 24 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.45907 * 301.37122 * 11 9 7 26 26 H 1.09001 * 109.45912 * 61.34439 * 11 9 7 27 27 H 1.08993 * 109.49659 * 58.58529 * 12 11 9 28 28 H 1.09001 * 109.49352 * 178.68839 * 12 11 9 29 29 H 1.08995 * 109.58348 * 174.43073 * 13 12 11 30 30 H 1.09005 * 109.58418 * 294.84650 * 13 12 11 31 31 H 0.96700 * 113.99832 * 295.70155 * 18 17 15 32 32 H 1.08998 * 110.48282 * 335.77839 * 19 17 15 33 33 H 1.08994 * 110.49067 * 98.42990 * 19 17 15 34 34 H 1.08996 * 110.72077 * 279.56751 * 20 19 17 35 35 H 1.08999 * 110.76390 * 156.22107 * 20 19 17 36 36 H 1.08993 * 110.48394 * 203.40246 * 21 20 19 37 37 H 1.08998 * 110.48645 * 80.76132 * 21 20 19 38 38 H 1.09008 * 110.03171 * 238.57119 * 22 17 15 39 39 H 1.08998 * 110.03374 * 359.94768 * 22 17 15 40 40 H 1.09000 * 109.59068 * 293.82387 * 23 14 13 41 41 H 1.09000 * 109.58707 * 173.39889 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3918 2.1068 -1.3948 5 1 1.5029 2.6201 0.8022 6 1 3.5951 1.4121 0.5926 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0827 9 6 3.5072 -1.1967 0.1135 10 1 3.9131 -0.3298 -0.4078 11 6 3.9075 -1.1385 1.5896 12 6 5.4332 -1.1071 1.7052 13 6 6.0139 -2.3875 1.0967 14 7 5.5157 -2.5258 -0.2785 15 6 6.3722 -2.6936 -1.3055 16 8 5.9545 -2.7303 -2.4436 17 6 7.8487 -2.8356 -1.0397 18 8 8.3170 -1.7240 -0.2734 19 6 8.6199 -2.9205 -2.3731 20 6 9.7523 -3.9403 -2.0917 21 6 9.0541 -4.9871 -1.1884 22 6 8.1248 -4.1487 -0.2865 23 6 4.0660 -2.4781 -0.5129 24 1 -0.4850 0.8400 -0.0004 25 1 3.4904 -0.2398 2.0438 26 1 3.5225 -2.0183 2.1052 27 1 5.8209 -0.2411 1.1688 28 1 5.7171 -1.0422 2.7556 29 1 7.1021 -2.3265 1.0869 30 1 5.6995 -3.2480 1.6875 31 1 8.2511 -0.8749 -0.7314 32 1 7.9685 -3.2838 -3.1679 33 1 9.0374 -1.9484 -2.6349 34 1 10.5780 -3.4637 -1.5635 35 1 10.0983 -4.3989 -3.0180 36 1 9.7886 -5.5223 -0.5868 37 1 8.4727 -5.6844 -1.7916 38 1 8.6168 -3.9381 0.6632 39 1 7.1908 -4.6828 -0.1124 40 1 3.5928 -3.3459 -0.0534 41 1 3.8691 -2.4768 -1.5849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -98.784368 kcal Electronic energy + Delta-G solvation = -21852.681759 eV Core-core repulsion = 18731.694468 eV Total energy + Delta-G solvation = -3120.987291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61084 -38.03557 -36.77995 -35.10986 -33.36300 -31.76174 -30.57847 -28.92639 -28.29163 -25.14589 -24.87856 -21.70456 -21.50659 -21.05345 -19.62293 -18.78319 -17.49556 -16.79168 -16.16424 -16.01838 -15.50253 -14.72618 -14.41061 -14.10266 -13.82140 -13.63020 -13.06745 -13.03735 -12.77401 -12.57396 -12.46732 -12.15366 -11.90792 -11.46886 -11.30510 -11.26251 -11.13202 -11.07165 -10.75266 -10.70035 -10.52362 -10.28358 -10.05345 -9.82088 -9.58985 -9.18951 -8.88655 -8.54691 -8.06764 -6.10645 -4.10161 2.78693 3.26974 3.36034 3.36296 3.38673 3.94271 4.33010 4.40493 4.48155 4.65089 4.95891 5.19464 5.22160 5.26807 5.43118 5.44607 5.48090 5.51961 5.64737 5.70257 5.75417 5.84614 5.92957 5.99175 6.02271 6.12615 6.19617 6.23480 6.25216 6.45596 6.58517 6.72547 6.84816 6.94184 7.25358 7.36979 7.43330 7.73594 7.86710 8.44318 8.49973 8.93681 9.52438 11.02413 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033024 B = 0.005416 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.655024 B = 5168.892439 C = 5258.912982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.007 3.993 10 H 0.032 0.968 11 C -0.114 4.114 12 C -0.135 4.135 13 C 0.096 3.904 14 N -0.595 5.595 15 C 0.486 3.514 16 O -0.544 6.544 17 C 0.116 3.884 18 O -0.543 6.543 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.111 4.111 23 C 0.120 3.880 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.381 0.619 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.667 -6.136 1.047 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.012 4.012 10 H 0.050 0.950 11 C -0.152 4.152 12 C -0.173 4.173 13 C -0.026 4.026 14 N -0.326 5.326 15 C 0.272 3.728 16 O -0.422 6.422 17 C 0.073 3.927 18 O -0.350 6.350 19 C -0.179 4.179 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.001 4.001 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.362 -6.506 0.901 20.445 hybrid contribution 0.023 1.492 -0.246 1.513 sum 19.385 -5.014 0.655 20.033 Atomic orbital electron populations 1.69909 1.06320 1.26970 1.50397 1.24992 0.94629 0.98969 0.94192 0.86910 0.80778 0.83813 0.78408 1.20509 1.21460 1.18340 1.20884 0.88689 0.94731 1.50850 0.90786 1.19442 0.96743 0.93330 0.91710 0.95003 1.21899 0.91833 1.01308 1.00182 1.21968 0.98603 0.97114 0.99603 1.22073 1.00780 0.97955 0.81831 1.48363 1.08003 1.69262 1.06994 1.21220 0.89085 0.77395 0.85116 1.90669 1.78947 1.51080 1.21519 1.22070 0.89413 0.88731 0.92509 1.86501 1.86171 1.17678 1.44676 1.22972 0.97395 1.00575 0.96980 1.22468 0.97483 0.96247 0.99564 1.22369 0.98246 0.97683 0.97800 1.22224 1.00795 0.92376 0.99434 1.21928 0.76239 0.99635 1.02250 0.92638 0.92769 0.92692 0.92425 0.92050 0.87719 0.92396 0.77023 0.88729 0.90848 0.91214 0.91274 0.91089 0.91238 0.89546 0.90465 0.92169 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.53 26.36 -169.99 -4.48 17.04 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.03 5.91 56.52 0.33 -5.69 16 7 C -0.51 -14.20 8.87 -34.44 -0.31 -14.51 16 8 H 0.07 2.21 8.05 -52.49 -0.42 1.79 16 9 C 0.01 0.17 1.78 -91.65 -0.16 0.01 16 10 H 0.03 0.78 5.72 -51.93 -0.30 0.48 16 11 C -0.11 -2.32 4.79 -26.69 -0.13 -2.45 16 12 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 13 C 0.10 1.43 5.50 -3.71 -0.02 1.41 16 14 N -0.59 -10.48 2.97 -172.77 -0.51 -10.99 16 15 C 0.49 8.31 6.50 -10.99 -0.07 8.24 16 16 O -0.54 -11.19 14.80 5.55 0.08 -11.11 16 17 C 0.12 1.48 0.83 -90.66 -0.08 1.41 16 18 O -0.54 -6.30 10.40 -35.23 -0.37 -6.66 16 19 C -0.14 -1.63 5.91 -25.03 -0.15 -1.78 16 20 C -0.12 -1.10 6.91 -24.69 -0.17 -1.27 16 21 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 22 C -0.11 -1.21 4.98 -25.61 -0.13 -1.34 16 23 C 0.12 2.53 5.70 -3.71 -0.02 2.51 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.05 1.17 6.79 -51.93 -0.35 0.81 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.38 4.03 -51.93 -0.21 1.17 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.38 3.63 8.97 45.56 0.41 4.04 16 32 H 0.09 1.28 6.83 -51.93 -0.35 0.93 16 33 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.87 7.78 -51.92 -0.40 0.47 16 39 H 0.08 0.91 7.60 -51.93 -0.39 0.51 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.94 7.00 -51.93 -0.36 1.58 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -31.74 311.09 -7.29 -39.03 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.81 Total: 3.97 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.66 Total: -9.41 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.26 Total: -37.55 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.28 Total: -17.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.48 Total: 17.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.74 -7.29 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.750 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds