Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47161 * 274.95481 * 3 2 1 5 5 H 1.48500 * 109.47358 * 34.95677 * 3 2 1 6 6 H 1.48499 * 109.47148 * 154.95894 * 3 2 1 7 7 C 1.37880 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00354 * 5.01293 * 7 2 1 9 9 C 1.50701 * 120.00058 * 185.01453 * 7 2 1 10 10 H 1.09000 * 109.49789 * 325.06729 * 9 7 2 11 11 C 1.53046 * 109.49764 * 85.12375 * 9 7 2 12 12 C 1.53040 * 109.53792 * 181.35355 * 11 9 7 13 13 C 1.53199 * 109.31034 * 298.63699 * 12 11 9 14 14 N 1.46919 * 108.77568 * 54.63592 * 13 12 11 15 15 C 1.34773 * 120.63117 * 126.41622 * 14 13 12 16 16 O 1.21285 * 120.00088 * 184.18954 * 15 14 13 17 17 C 1.50700 * 119.99999 * 4.18450 * 15 14 13 18 18 O 1.42907 * 110.01750 * 305.14853 * 17 15 14 19 19 C 1.54263 * 110.03397 * 183.75963 * 17 15 14 20 20 C 1.54968 * 104.15791 * 217.13600 * 19 17 15 21 21 C 1.54894 * 102.77960 * 37.88572 * 20 19 17 22 22 C 1.53873 * 110.03195 * 66.53867 * 17 15 14 23 23 C 1.46927 * 118.74015 * 306.38737 * 14 13 12 24 24 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.45907 * 301.37122 * 11 9 7 26 26 H 1.09001 * 109.45912 * 61.34439 * 11 9 7 27 27 H 1.08993 * 109.49659 * 58.58529 * 12 11 9 28 28 H 1.09001 * 109.49352 * 178.68839 * 12 11 9 29 29 H 1.08995 * 109.58348 * 174.43073 * 13 12 11 30 30 H 1.09005 * 109.58418 * 294.84650 * 13 12 11 31 31 H 0.96700 * 113.99832 * 295.70155 * 18 17 15 32 32 H 1.08998 * 110.48282 * 335.77839 * 19 17 15 33 33 H 1.08994 * 110.49067 * 98.42990 * 19 17 15 34 34 H 1.08996 * 110.72077 * 279.56751 * 20 19 17 35 35 H 1.08999 * 110.76390 * 156.22107 * 20 19 17 36 36 H 1.08993 * 110.48394 * 203.40246 * 21 20 19 37 37 H 1.08998 * 110.48645 * 80.76132 * 21 20 19 38 38 H 1.09008 * 110.03171 * 238.57119 * 22 17 15 39 39 H 1.08998 * 110.03374 * 359.94768 * 22 17 15 40 40 H 1.09000 * 109.59068 * 293.82387 * 23 14 13 41 41 H 1.09000 * 109.58707 * 173.39889 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3918 2.1068 -1.3948 5 1 1.5029 2.6201 0.8022 6 1 3.5951 1.4121 0.5926 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0827 9 6 3.5072 -1.1967 0.1135 10 1 3.9131 -0.3298 -0.4078 11 6 3.9075 -1.1385 1.5896 12 6 5.4332 -1.1071 1.7052 13 6 6.0139 -2.3875 1.0967 14 7 5.5157 -2.5258 -0.2785 15 6 6.3722 -2.6936 -1.3055 16 8 5.9545 -2.7303 -2.4436 17 6 7.8487 -2.8356 -1.0397 18 8 8.3170 -1.7240 -0.2734 19 6 8.6199 -2.9205 -2.3731 20 6 9.7523 -3.9403 -2.0917 21 6 9.0541 -4.9871 -1.1884 22 6 8.1248 -4.1487 -0.2865 23 6 4.0660 -2.4781 -0.5129 24 1 -0.4850 0.8400 -0.0004 25 1 3.4904 -0.2398 2.0438 26 1 3.5225 -2.0183 2.1052 27 1 5.8209 -0.2411 1.1688 28 1 5.7171 -1.0422 2.7556 29 1 7.1021 -2.3265 1.0869 30 1 5.6995 -3.2480 1.6875 31 1 8.2511 -0.8749 -0.7314 32 1 7.9685 -3.2838 -3.1679 33 1 9.0374 -1.9484 -2.6349 34 1 10.5780 -3.4637 -1.5635 35 1 10.0983 -4.3989 -3.0180 36 1 9.7886 -5.5223 -0.5868 37 1 8.4727 -5.6844 -1.7916 38 1 8.6168 -3.9381 0.6632 39 1 7.1908 -4.6828 -0.1124 40 1 3.5928 -3.3459 -0.0534 41 1 3.8691 -2.4768 -1.5849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -121.352147 kcal Electronic energy + Delta-G solvation = -21853.660371 eV Core-core repulsion = 18731.694468 eV Total energy + Delta-G solvation = -3121.965904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.83221 -39.28263 -38.20585 -35.99080 -35.21642 -33.51636 -32.21708 -29.81425 -29.29183 -27.03860 -26.28216 -23.24414 -22.78756 -21.85120 -20.98194 -20.16854 -19.11153 -18.44393 -17.32641 -17.08065 -16.68724 -16.43899 -15.66947 -15.54241 -15.40213 -14.80531 -14.66773 -14.50692 -14.11073 -13.92176 -13.75030 -13.43257 -13.05140 -12.99269 -12.78380 -12.44290 -12.34998 -12.04970 -12.01231 -11.96323 -11.83282 -11.65155 -11.49430 -11.46291 -11.31751 -11.02923 -10.71306 -10.27944 -9.57476 -8.33254 -6.36917 1.29717 1.32347 1.43698 1.45940 2.01235 2.31351 3.03341 3.05027 3.31964 3.60083 3.66823 4.07532 4.14399 4.24163 4.25636 4.34627 4.41230 4.45561 4.53583 4.61895 4.72094 4.74738 4.78308 4.86423 4.95722 4.99454 5.03758 5.09783 5.16740 5.19346 5.22794 5.24180 5.42017 5.46537 5.49171 5.65673 5.75674 6.24993 6.40149 6.61074 6.69304 7.11363 7.28753 8.83621 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033024 B = 0.005416 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.655024 B = 5168.892439 C = 5258.912982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.234 1.234 7 C -0.518 4.518 8 H 0.033 0.967 9 C 0.010 3.990 10 H 0.022 0.978 11 C -0.112 4.112 12 C -0.127 4.127 13 C 0.097 3.903 14 N -0.597 5.597 15 C 0.479 3.521 16 O -0.587 6.587 17 C 0.128 3.872 18 O -0.538 6.538 19 C -0.144 4.144 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.130 3.870 24 H 0.266 0.734 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.391 0.609 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.597 -5.801 2.554 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.157 1.157 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.010 4.010 10 H 0.040 0.960 11 C -0.150 4.150 12 C -0.165 4.165 13 C -0.024 4.024 14 N -0.328 5.328 15 C 0.267 3.733 16 O -0.468 6.468 17 C 0.084 3.916 18 O -0.346 6.346 19 C -0.182 4.182 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.149 4.149 23 C 0.007 3.993 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.242 0.758 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.334 -6.179 2.433 24.260 hybrid contribution -1.274 1.306 -0.761 1.977 sum 22.060 -4.873 1.672 22.653 Atomic orbital electron populations 1.70051 1.08208 1.28055 1.52436 1.25842 0.95371 1.02867 0.94029 0.85897 0.80576 0.79026 0.78414 1.20686 1.20814 1.15710 1.21185 0.91335 0.93217 1.49929 0.94820 1.19365 0.93607 0.93852 0.94183 0.96020 1.21753 0.95341 1.00776 0.97114 1.21928 0.94861 0.97704 1.02037 1.22310 1.02131 0.97932 0.80019 1.48408 1.06307 1.69362 1.08691 1.22223 0.91030 0.75865 0.84168 1.90650 1.80104 1.52672 1.23352 1.22015 0.85767 0.90071 0.93776 1.86469 1.85473 1.18026 1.44648 1.22983 0.97743 1.01987 0.95485 1.22465 0.96773 0.95446 1.00288 1.22397 0.98333 0.97488 0.97729 1.22286 1.00914 0.91337 1.00357 1.21470 0.79117 0.98560 1.00113 0.92495 0.93953 0.92706 0.92574 0.88482 0.85109 0.90899 0.75794 0.91431 0.89763 0.89701 0.90234 0.88709 0.91981 0.87739 0.91605 0.92349 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 2 C 0.02 0.95 5.47 84.66 0.46 1.42 16 3 Si 0.94 44.74 26.36 68.60 1.81 46.55 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.23 -10.13 5.91 99.48 0.59 -9.54 16 7 C -0.52 -29.82 8.87 25.60 0.23 -29.59 16 8 H 0.03 2.14 8.05 -2.91 -0.02 2.12 16 9 C 0.01 0.45 1.78 -11.46 -0.02 0.43 16 10 H 0.02 1.05 5.72 -2.39 -0.01 1.04 16 11 C -0.11 -4.37 4.79 30.62 0.15 -4.22 16 12 C -0.13 -3.68 6.08 30.67 0.19 -3.49 16 13 C 0.10 2.56 5.50 86.37 0.47 3.03 16 14 N -0.60 -20.36 2.97 -818.91 -2.43 -22.80 16 15 C 0.48 16.01 6.50 87.66 0.57 16.58 16 16 O -0.59 -24.70 14.80 -3.05 -0.05 -24.74 16 17 C 0.13 2.92 0.83 -10.82 -0.01 2.91 16 18 O -0.54 -10.32 10.40 -148.98 -1.55 -11.87 16 19 C -0.14 -3.03 5.91 31.70 0.19 -2.84 16 20 C -0.11 -1.68 6.91 31.91 0.22 -1.46 16 21 C -0.12 -1.85 6.83 31.67 0.22 -1.63 16 22 C -0.11 -2.08 4.98 31.32 0.16 -1.92 16 23 C 0.13 5.59 5.70 86.36 0.49 6.09 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.04 1.74 6.79 -2.39 -0.02 1.72 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.13 2.83 4.03 -2.39 -0.01 2.82 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.39 6.01 8.97 -74.06 -0.66 5.34 16 32 H 0.07 1.82 6.83 -2.39 -0.02 1.80 16 33 H 0.08 1.55 7.98 -2.39 -0.02 1.53 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.60 7.78 -2.38 -0.02 1.58 16 39 H 0.07 1.39 7.60 -2.39 -0.02 1.37 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 2.64 7.00 -2.39 -0.02 2.63 16 Total: -1.00 -72.26 311.09 1.63 -70.63 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.24 Total: 16.42 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 3.31 Total: -14.70 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.13 Total: -82.28 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.59 Total: -36.61 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.81 Total: 46.55 kcal Total: -72.26 1.63 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.726 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds