Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 C 1.53010 * 109.47280 * 180.02562 * 15 14 12 17 17 O 1.42900 * 112.84750 * 53.80036 * 16 15 14 18 18 C 1.53785 * 113.60879 * 282.49713 * 16 15 14 19 19 C 1.53780 * 87.07742 * 220.01567 * 18 16 15 20 20 C 1.53777 * 113.61634 * 184.99874 * 16 15 14 21 21 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 22 22 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 23 23 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 24 24 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 25 25 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 26 26 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 27 27 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 28 28 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 29 29 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 30 30 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 31 31 H 0.96704 * 113.99975 * 309.66679 * 17 16 15 32 32 H 1.08998 * 113.61381 * 334.56501 * 18 16 15 33 33 H 1.09000 * 113.61009 * 105.46982 * 18 16 15 34 34 H 1.09006 * 113.61595 * 270.88829 * 19 18 16 35 35 H 1.08999 * 113.61554 * 139.98496 * 19 18 16 36 36 H 1.08993 * 113.61502 * 254.52975 * 20 16 15 37 37 H 1.09005 * 113.61534 * 25.43272 * 20 16 15 38 38 H 1.09003 * 117.49648 * 359.97438 * 21 9 7 39 39 H 1.08991 * 117.50066 * 145.01997 * 21 9 7 40 40 H 1.08996 * 117.49909 * 214.98045 * 22 9 7 41 41 H 1.09006 * 117.50020 * 359.97109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 6 4.3364 -4.9407 6.3734 17 8 5.2160 -3.8168 6.4457 18 6 5.0260 -6.2366 5.9149 19 6 5.3327 -6.5049 7.3977 20 6 4.1093 -5.6334 7.7273 21 6 1.5730 -3.5796 -0.9302 22 6 0.2452 -2.8210 -1.0000 23 1 -0.4850 0.8369 -0.0732 24 1 0.3751 -2.1632 2.0411 25 1 0.3015 -3.8512 1.4812 26 1 3.0164 -3.0733 1.8316 27 1 3.9649 -4.7929 3.6769 28 1 3.9584 -3.1474 4.3556 29 1 2.4574 -3.9059 6.1781 30 1 2.4643 -5.5511 5.4990 31 1 5.3812 -3.3911 5.5933 32 1 4.3430 -6.9615 5.4722 33 1 5.9159 -6.0667 5.3088 34 1 6.2772 -6.0761 7.7328 35 1 5.2152 -7.5495 7.6859 36 1 4.2590 -4.9768 8.5843 37 1 3.1757 -6.1936 7.7801 38 1 2.3246 -3.3491 -1.6853 39 1 1.5428 -4.6172 -0.5978 40 1 -0.6578 -3.3599 -0.7135 41 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601545717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = -59.078647 kcal Electronic energy + Delta-G solvation = -20393.059289 eV Core-core repulsion = 17273.793767 eV Total energy + Delta-G solvation = -3119.265522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.05094 -38.89515 -36.71497 -34.79988 -33.30916 -32.44129 -31.98413 -27.28509 -26.00430 -25.64903 -24.70323 -22.01376 -21.16731 -19.82365 -19.71938 -19.22429 -17.22296 -16.41297 -15.97773 -15.56203 -15.25254 -15.04466 -14.84703 -14.60922 -13.88231 -13.70282 -13.51181 -12.92109 -12.68947 -12.55085 -12.19153 -11.85708 -11.69266 -11.58108 -11.26304 -11.12529 -11.02668 -10.98126 -10.94069 -10.56199 -10.27855 -10.25711 -9.74296 -9.64161 -9.29920 -9.07818 -8.52689 -8.29719 -8.12031 -6.10577 -4.20837 3.16196 3.23183 3.31724 3.32493 3.79113 3.90395 4.32123 4.36385 4.49777 4.65810 4.74892 5.11169 5.14301 5.16666 5.18778 5.34041 5.48275 5.52619 5.56623 5.69141 5.71297 5.80413 5.89840 6.01279 6.12283 6.21330 6.24449 6.30732 6.44442 6.53200 6.67148 6.84688 7.09077 7.24812 7.36456 7.50219 7.51510 7.77645 8.25810 8.30410 8.79848 8.84800 9.46592 10.96509 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.004051 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.146650 B = 6910.063806 C = 7481.938795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.162 3.838 11 N -0.704 5.704 12 C 0.503 3.497 13 O -0.559 6.559 14 C -0.145 4.145 15 C -0.118 4.118 16 C 0.107 3.893 17 O -0.544 6.544 18 C -0.167 4.167 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.211 4.211 22 C -0.143 4.143 23 H 0.262 0.738 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.401 0.599 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.378 0.622 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 -10.192 9.181 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.039 3.961 11 N -0.352 5.352 12 C 0.288 3.712 13 O -0.439 6.439 14 C -0.185 4.185 15 C -0.156 4.156 16 C 0.066 3.934 17 O -0.351 6.351 18 C -0.204 4.204 19 C -0.173 4.173 20 C -0.165 4.165 21 C -0.248 4.248 22 C -0.181 4.181 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.235 0.765 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.432 -10.357 10.229 16.822 hybrid contribution 0.757 1.261 -1.011 1.785 sum 9.189 -9.095 9.218 15.879 Atomic orbital electron populations 1.69990 1.05904 1.26914 1.48204 1.24994 0.94825 0.98998 0.94278 0.86619 0.79922 0.83522 0.78116 1.20679 1.21159 1.19780 1.20343 0.92606 0.88575 1.52348 0.92208 1.19044 0.99378 0.93309 0.85930 1.20994 0.84216 0.97861 0.93005 1.46018 1.11262 1.62704 1.15259 1.20458 0.90805 0.77851 0.82044 1.90659 1.31156 1.54116 1.67920 1.21641 0.97210 1.02681 0.96986 1.21850 0.96629 1.02946 0.94224 1.22267 0.89048 0.85351 0.96761 1.86461 1.67311 1.45282 1.36079 1.23639 1.01265 0.98389 0.97147 1.22754 0.98582 0.99671 0.96329 1.23018 0.98943 0.97979 0.96541 1.23015 1.00741 0.95550 1.05523 1.22466 0.90780 1.01317 1.03509 0.92841 0.91515 0.94261 0.76522 0.89160 0.89235 0.90360 0.90053 0.77260 0.89317 0.91043 0.89997 0.91542 0.90706 0.88807 0.90393 0.91773 0.91846 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 12.65 55.43 0.70 -23.34 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.50 -12.67 8.59 -34.44 -0.30 -12.96 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.06 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.16 3.63 5.50 -4.04 -0.02 3.60 16 11 N -0.70 -13.10 5.48 -60.29 -0.33 -13.43 16 12 C 0.50 8.86 7.83 -10.98 -0.09 8.77 16 13 O -0.56 -12.01 15.98 5.55 0.09 -11.92 16 14 C -0.15 -1.76 5.26 -27.88 -0.15 -1.91 16 15 C -0.12 -1.43 4.14 -26.73 -0.11 -1.54 16 16 C 0.11 1.11 1.38 -89.80 -0.12 0.99 16 17 O -0.54 -6.03 13.39 -35.23 -0.47 -6.50 16 18 C -0.17 -1.50 7.32 -25.92 -0.19 -1.69 16 19 C -0.14 -1.19 8.02 -25.92 -0.21 -1.40 16 20 C -0.13 -1.24 7.47 -25.92 -0.19 -1.43 16 21 C -0.21 -4.33 9.96 -26.69 -0.27 -4.60 16 22 C -0.14 -3.25 9.14 -26.70 -0.24 -3.49 16 23 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 24 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.40 6.73 8.33 -40.82 -0.34 6.39 16 27 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 28 H 0.09 0.93 6.75 -51.93 -0.35 0.58 16 29 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 31 H 0.38 3.11 7.18 45.56 0.33 3.44 16 32 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -30.01 339.95 -8.35 -38.36 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.23 Total: 9.93 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.21 Total: -13.50 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.37 Total: -36.78 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.38 Total: -18.43 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.01 -8.35 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601545717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.716 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds