Wall clock time and date at job start Mon Mar 30 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 C 1.53010 * 109.47280 * 180.02562 * 15 14 12 17 17 O 1.42900 * 112.84750 * 53.80036 * 16 15 14 18 18 C 1.53785 * 113.60879 * 282.49713 * 16 15 14 19 19 C 1.53780 * 87.07742 * 220.01567 * 18 16 15 20 20 C 1.53777 * 113.61634 * 184.99874 * 16 15 14 21 21 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 22 22 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 23 23 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 24 24 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 25 25 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 26 26 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 27 27 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 28 28 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 29 29 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 30 30 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 31 31 H 0.96704 * 113.99975 * 309.66679 * 17 16 15 32 32 H 1.08998 * 113.61381 * 334.56501 * 18 16 15 33 33 H 1.09000 * 113.61009 * 105.46982 * 18 16 15 34 34 H 1.09006 * 113.61595 * 270.88829 * 19 18 16 35 35 H 1.08999 * 113.61554 * 139.98496 * 19 18 16 36 36 H 1.08993 * 113.61502 * 254.52975 * 20 16 15 37 37 H 1.09005 * 113.61534 * 25.43272 * 20 16 15 38 38 H 1.09003 * 117.49648 * 359.97438 * 21 9 7 39 39 H 1.08991 * 117.50066 * 145.01997 * 21 9 7 40 40 H 1.08996 * 117.49909 * 214.98045 * 22 9 7 41 41 H 1.09006 * 117.50020 * 359.97109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 6 4.3364 -4.9407 6.3734 17 8 5.2160 -3.8168 6.4457 18 6 5.0260 -6.2366 5.9149 19 6 5.3327 -6.5049 7.3977 20 6 4.1093 -5.6334 7.7273 21 6 1.5730 -3.5796 -0.9302 22 6 0.2452 -2.8210 -1.0000 23 1 -0.4850 0.8369 -0.0732 24 1 0.3751 -2.1632 2.0411 25 1 0.3015 -3.8512 1.4812 26 1 3.0164 -3.0733 1.8316 27 1 3.9649 -4.7929 3.6769 28 1 3.9584 -3.1474 4.3556 29 1 2.4574 -3.9059 6.1781 30 1 2.4643 -5.5511 5.4990 31 1 5.3812 -3.3911 5.5933 32 1 4.3430 -6.9615 5.4722 33 1 5.9159 -6.0667 5.3088 34 1 6.2772 -6.0761 7.7328 35 1 5.2152 -7.5495 7.6859 36 1 4.2590 -4.9768 8.5843 37 1 3.1757 -6.1936 7.7801 38 1 2.3246 -3.3491 -1.6853 39 1 1.5428 -4.6172 -0.5978 40 1 -0.6578 -3.3599 -0.7135 41 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601545717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:35 Heat of formation + Delta-G solvation = -79.187064 kcal Electronic energy + Delta-G solvation = -20393.931255 eV Core-core repulsion = 17273.793767 eV Total energy + Delta-G solvation = -3120.137488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.04520 -40.19136 -38.46182 -35.58979 -34.92925 -33.96170 -33.47880 -28.71015 -27.51397 -26.69975 -26.01384 -23.08030 -22.80327 -21.36394 -20.85216 -20.55049 -18.51893 -17.99286 -17.05799 -16.81005 -16.65305 -16.55493 -16.02063 -15.82550 -15.42881 -14.99348 -14.61961 -14.37715 -14.15546 -13.65204 -13.47851 -13.36291 -12.95362 -12.84607 -12.78591 -12.75760 -12.36092 -12.03208 -12.02897 -11.99169 -11.69669 -11.41320 -11.09639 -10.95479 -10.84917 -10.52016 -10.43641 -10.03032 -9.82529 -8.09322 -6.23852 1.42634 1.45806 1.53432 1.75979 2.38135 2.44468 3.17242 3.18976 3.49040 3.57965 3.72618 3.78354 3.94329 4.12679 4.19697 4.24930 4.33240 4.54609 4.61636 4.64450 4.71870 4.74122 4.83364 4.88003 4.95677 4.99876 5.05156 5.07820 5.10535 5.25018 5.28398 5.40067 5.50384 5.56108 5.61437 5.71361 5.78483 6.36474 6.79208 6.84101 6.85634 7.41868 7.46544 8.97614 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.004051 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.146650 B = 6910.063806 C = 7481.938795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.004 3.996 10 C 0.178 3.822 11 N -0.700 5.700 12 C 0.499 3.501 13 O -0.602 6.602 14 C -0.132 4.132 15 C -0.113 4.113 16 C 0.106 3.894 17 O -0.558 6.558 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.135 4.135 21 C -0.175 4.175 22 C -0.157 4.157 23 H 0.258 0.742 24 H 0.022 0.978 25 H 0.035 0.965 26 H 0.412 0.588 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.390 0.610 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.947 -11.261 9.204 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.003 3.997 10 C 0.053 3.947 11 N -0.350 5.350 12 C 0.287 3.713 13 O -0.485 6.485 14 C -0.172 4.172 15 C -0.151 4.151 16 C 0.065 3.935 17 O -0.367 6.367 18 C -0.197 4.197 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.212 4.212 22 C -0.195 4.195 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.248 0.752 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.241 0.759 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.042 -11.431 10.240 18.906 hybrid contribution -0.068 1.571 -1.003 1.865 sum 10.974 -9.860 9.237 17.405 Atomic orbital electron populations 1.70122 1.07350 1.27273 1.49951 1.25727 0.95457 1.02175 0.94421 0.85680 0.78987 0.79675 0.78076 1.20312 1.22056 1.18488 1.20688 0.93061 0.89435 1.50949 0.91516 1.19074 1.00084 0.94010 0.86534 1.20533 0.85491 0.96072 0.92574 1.45915 1.10426 1.62913 1.15704 1.21434 0.92172 0.76279 0.81416 1.90643 1.33459 1.55677 1.68676 1.21657 0.94469 1.04701 0.96347 1.21788 0.97335 1.01902 0.94101 1.22274 0.88233 0.85888 0.97062 1.86450 1.67224 1.45684 1.37302 1.23620 1.01469 0.97229 0.97425 1.22730 0.97785 1.00214 0.96164 1.23118 0.99934 0.98250 0.95975 1.22998 0.98748 0.95903 1.03583 1.22387 0.92167 1.01916 1.03075 0.93290 0.95913 0.94632 0.75172 0.85853 0.86913 0.92933 0.90617 0.75912 0.88620 0.90119 0.90292 0.90178 0.91567 0.88208 0.89560 0.89359 0.91483 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.15 12.65 21.45 0.27 -50.88 16 2 C 0.02 1.19 5.43 84.65 0.46 1.65 16 3 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.50 -25.09 8.59 25.60 0.22 -24.87 16 8 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.00 0.17 1.47 -52.93 -0.08 0.09 16 10 C 0.18 8.00 5.50 86.38 0.48 8.48 16 11 N -0.70 -25.24 5.48 -463.05 -2.54 -27.78 16 12 C 0.50 17.04 7.83 87.66 0.69 17.73 16 13 O -0.60 -26.12 15.98 -3.04 -0.05 -26.16 16 14 C -0.13 -2.87 5.26 29.85 0.16 -2.71 16 15 C -0.11 -2.57 4.14 30.60 0.13 -2.44 16 16 C 0.11 2.00 1.38 -10.26 -0.01 1.98 16 17 O -0.56 -11.08 13.39 -148.98 -1.99 -13.08 16 18 C -0.16 -2.39 7.32 31.12 0.23 -2.16 16 19 C -0.13 -1.98 8.02 31.12 0.25 -1.74 16 20 C -0.14 -2.43 7.47 31.12 0.23 -2.20 16 21 C -0.18 -6.82 9.96 30.62 0.30 -6.51 16 22 C -0.16 -7.16 9.14 30.62 0.28 -6.88 16 23 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 24 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.04 1.60 8.09 -2.38 -0.02 1.58 16 26 H 0.41 12.89 8.33 -92.71 -0.77 12.11 16 27 H 0.12 1.94 8.05 -2.39 -0.02 1.92 16 28 H 0.11 1.98 6.75 -2.39 -0.02 1.96 16 29 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 30 H 0.08 1.80 8.01 -2.39 -0.02 1.78 16 31 H 0.39 5.25 7.18 -74.05 -0.53 4.72 16 32 H 0.10 1.32 8.04 -2.39 -0.02 1.30 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.63 8.10 -2.38 -0.02 1.61 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.06 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -65.53 339.95 0.76 -64.77 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.28 Total: 29.14 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.33 Total: -19.57 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.27 Total: -78.65 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -2.04 Total: -39.24 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.53 0.76 -64.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601545717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.413 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds