Wall clock time and date at job start Mon Mar 30 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1 15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47499 * 179.97438 * 16 14 12 18 18 C 1.52989 * 109.47059 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47001 * 179.97438 * 18 17 16 20 20 N 1.33322 * 126.55369 * 269.69126 * 19 18 17 21 21 N 1.28989 * 107.35504 * 179.83404 * 20 19 18 22 22 N 1.28787 * 108.72727 * 0.42866 * 21 20 19 23 23 H 0.97005 * 125.44344 * 179.72668 * 22 21 20 24 24 N 1.28877 * 109.10196 * 359.72799 * 22 21 20 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 30 30 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 31 31 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 32 32 H 1.09002 * 109.46657 * 299.99705 * 16 14 12 33 33 H 1.08996 * 109.47578 * 59.99114 * 16 14 12 34 34 H 1.09001 * 109.46419 * 300.00140 * 17 16 14 35 35 H 1.09001 * 109.46694 * 59.99362 * 17 16 14 36 36 H 1.08995 * 109.47462 * 299.99551 * 18 17 16 37 37 H 1.09001 * 109.47640 * 60.00245 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2959 -0.7462 3.3136 17 6 4.1463 0.2154 4.1463 18 6 4.6561 -0.5059 5.3955 19 6 5.4942 0.4410 6.2153 20 7 6.8108 0.6259 6.1155 21 7 7.1411 1.5182 6.9864 22 7 6.0842 1.8842 7.6247 23 1 6.0567 2.5424 8.3367 24 7 5.0690 1.2359 7.1664 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1609 -3.4845 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4483 -1.0891 3.9069 33 1 3.9016 -1.6023 3.0167 34 1 4.9938 0.5579 3.5526 35 1 3.5408 1.0718 4.4432 36 1 3.8084 -0.8481 5.9889 37 1 5.2615 -1.3625 5.0989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602095097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:40 Heat of formation + Delta-G solvation = 75.672455 kcal Electronic energy + Delta-G solvation = -19838.716209 eV Core-core repulsion = 16654.046341 eV Total energy + Delta-G solvation = -3184.669868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.61568 -39.11398 -35.84269 -35.11521 -34.18854 -32.94906 -32.43656 -29.70857 -27.89035 -26.05847 -25.18442 -24.70466 -23.55157 -21.66244 -20.56356 -19.32697 -18.18690 -17.21368 -16.59351 -16.07071 -15.60612 -15.42514 -14.79933 -14.33162 -13.95436 -13.82942 -12.99508 -12.76390 -12.54677 -12.38840 -12.22957 -11.84730 -11.62265 -11.50331 -11.42581 -11.24257 -11.14159 -11.03041 -10.79896 -10.69362 -10.61636 -10.38141 -10.23435 -10.13417 -9.15297 -8.87784 -8.39788 -7.54291 -6.04644 -4.12662 0.97080 1.94813 2.15147 3.29750 3.34802 3.36049 3.46088 3.69518 4.05021 4.15740 4.42408 4.95046 5.01883 5.08541 5.26026 5.37289 5.41733 5.54781 5.57912 5.65707 5.70292 5.90718 6.08882 6.22047 6.25066 6.33053 6.39935 6.78649 6.84669 7.08617 7.47360 7.55942 7.74667 8.04619 8.07335 8.23136 8.58371 8.86703 9.11371 9.53994 11.00615 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.003392 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.663841 B = 8251.536866 C = 8413.378929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.087 3.913 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.137 4.137 17 C -0.098 4.098 18 C -0.025 4.025 19 C 0.183 3.817 20 N -0.274 5.274 21 N -0.056 5.056 22 N -0.234 5.234 23 H 0.473 0.527 24 N -0.301 5.301 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 -3.802 18.679 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.288 3.712 15 O -0.434 6.434 16 C -0.178 4.178 17 C -0.137 4.137 18 C -0.066 4.066 19 C -0.099 4.099 20 N -0.147 5.147 21 N -0.051 5.051 22 N -0.079 5.079 23 H 0.326 0.674 24 N -0.153 5.153 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.247 -2.820 18.564 19.497 hybrid contribution -0.163 -0.339 -0.573 0.686 sum 5.084 -3.160 17.991 18.961 Atomic orbital electron populations 1.22096 0.98343 0.99308 1.00807 1.18915 0.90785 0.94533 0.80084 0.91964 1.21300 1.31797 1.12961 0.90357 0.92334 1.24900 0.94972 0.94983 0.98973 1.69870 1.36381 1.22650 1.23825 0.86554 0.79275 0.79547 0.81994 1.20246 1.21205 1.20222 1.48247 1.49098 1.11660 1.23650 1.21555 1.01555 0.83258 0.99358 1.20392 0.79148 0.87154 0.84475 1.90651 1.58397 1.17325 1.77073 1.21653 1.00659 0.99623 0.95825 1.21284 1.00470 0.98171 0.93803 1.20099 0.97387 0.94608 0.94480 1.25795 0.90215 0.98630 0.95301 1.75908 1.12549 1.10973 1.15312 1.78947 1.13424 1.09238 1.03507 1.47789 1.02207 1.29948 1.27975 0.67361 1.74730 1.15893 1.10152 1.14512 0.88853 0.95118 0.97019 0.92659 0.93326 0.92838 0.91003 0.89282 0.89087 0.90476 0.90817 0.88670 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.60 2.64 -69.08 -0.18 6.42 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.31 8.37 -34.44 -0.29 -14.60 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.60 -12.52 2.75 -175.25 -0.48 -13.01 16 13 C 0.09 1.40 9.48 59.85 0.57 1.96 16 14 C 0.50 10.10 7.67 -10.99 -0.08 10.01 16 15 O -0.56 -13.66 15.31 5.56 0.09 -13.58 16 16 C -0.14 -1.83 4.25 -27.88 -0.12 -1.95 16 17 C -0.10 -1.28 4.49 -26.73 -0.12 -1.40 16 18 C -0.03 -0.25 5.84 -27.89 -0.16 -0.41 16 19 C 0.18 2.17 7.62 -156.61 -1.19 0.97 16 20 N -0.27 -3.62 12.50 32.45 0.41 -3.21 16 21 N -0.06 -0.64 13.48 60.35 0.81 0.18 16 22 N -0.23 -2.01 7.91 60.34 0.48 -1.53 16 23 H 0.47 1.73 8.96 -340.52 -3.05 -1.32 16 24 N -0.30 -3.27 12.36 32.47 0.40 -2.87 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 31 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 32 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 33 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -34.61 312.80 -6.94 -41.54 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.61 Total: -3.13 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.34 Total: -0.51 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 2.24 Total: -45.20 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.61 -6.94 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602095097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.217 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds