Wall clock time and date at job start Mon Mar 30 2020 00:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 C 1.34773 * 120.00007 * 240.00425 * 12 2 1 15 15 O 1.21282 * 120.00259 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00126 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47499 * 179.97438 * 16 14 12 18 18 C 1.52989 * 109.47059 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47001 * 179.97438 * 18 17 16 20 20 N 1.33322 * 126.55369 * 269.69126 * 19 18 17 21 21 N 1.28989 * 107.35504 * 179.83404 * 20 19 18 22 22 N 1.28787 * 108.72727 * 0.42866 * 21 20 19 23 23 H 0.97005 * 125.44344 * 179.72668 * 22 21 20 24 24 N 1.28877 * 109.10196 * 359.72799 * 22 21 20 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 30 30 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 31 31 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 32 32 H 1.09002 * 109.46657 * 299.99705 * 16 14 12 33 33 H 1.08996 * 109.47578 * 59.99114 * 16 14 12 34 34 H 1.09001 * 109.46419 * 300.00140 * 17 16 14 35 35 H 1.09001 * 109.46694 * 59.99362 * 17 16 14 36 36 H 1.08995 * 109.47462 * 299.99551 * 18 17 16 37 37 H 1.09001 * 109.47640 * 60.00245 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1254 1.8913 16 6 3.2959 -0.7462 3.3136 17 6 4.1463 0.2154 4.1463 18 6 4.6561 -0.5059 5.3955 19 6 5.4942 0.4410 6.2153 20 7 6.8108 0.6259 6.1155 21 7 7.1411 1.5182 6.9864 22 7 6.0842 1.8842 7.6247 23 1 6.0567 2.5424 8.3367 24 7 5.0690 1.2359 7.1664 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1609 -3.4845 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4483 -1.0891 3.9069 33 1 3.9016 -1.6023 3.0167 34 1 4.9938 0.5579 3.5526 35 1 3.5408 1.0718 4.4432 36 1 3.8084 -0.8481 5.9889 37 1 5.2615 -1.3625 5.0989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602095097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:39 Heat of formation + Delta-G solvation = 50.186915 kcal Electronic energy + Delta-G solvation = -19839.821345 eV Core-core repulsion = 16654.046341 eV Total energy + Delta-G solvation = -3185.775004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.44287 -40.69698 -37.27256 -36.39843 -35.07415 -34.76819 -33.54190 -31.46934 -29.01060 -27.50048 -27.24275 -25.55769 -24.70597 -22.84238 -21.98557 -20.13332 -19.74004 -18.48601 -18.06960 -17.69039 -17.08550 -16.79198 -16.25004 -15.69058 -15.20320 -14.93360 -14.59690 -14.18502 -13.96116 -13.60893 -13.40599 -13.26053 -13.03341 -12.89310 -12.76884 -12.66621 -12.53106 -12.30718 -12.27945 -12.14724 -12.10894 -12.06124 -11.60652 -11.25489 -11.15012 -10.60668 -10.41985 -9.25072 -8.12912 -6.29871 0.14915 1.06575 1.42081 1.44821 1.52005 1.54079 1.92474 2.36739 2.56221 2.96667 3.14630 3.35495 3.79224 4.06567 4.14201 4.35009 4.49741 4.58147 4.66837 4.72766 4.77302 4.79615 4.89999 4.91470 4.95796 5.08805 5.15740 5.23826 5.38276 5.49402 5.66947 5.67592 5.72037 6.08146 6.19284 6.79242 6.93906 7.23093 7.36247 7.57647 8.91036 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.003392 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.663841 B = 8251.536866 C = 8413.378929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.259 3.741 3 H 0.003 0.997 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.604 5.604 13 C 0.081 3.919 14 C 0.486 3.514 15 O -0.615 6.615 16 C -0.120 4.120 17 C -0.090 4.090 18 C -0.016 4.016 19 C 0.172 3.828 20 N -0.307 5.307 21 N -0.067 5.067 22 N -0.208 5.208 23 H 0.491 0.509 24 N -0.306 5.306 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -6.438 20.194 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.021 0.979 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.335 5.335 13 C -0.061 4.061 14 C 0.276 3.724 15 O -0.498 6.498 16 C -0.160 4.160 17 C -0.130 4.130 18 C -0.056 4.056 19 C -0.111 4.111 20 N -0.179 5.179 21 N -0.062 5.062 22 N -0.059 5.059 23 H 0.349 0.651 24 N -0.159 5.159 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.143 0.857 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.242 -5.493 20.119 21.504 hybrid contribution -0.159 0.578 -0.974 1.144 sum 5.083 -4.915 19.145 20.409 Atomic orbital electron populations 1.21874 0.97238 1.00165 0.99832 1.18481 0.91596 0.92080 0.82160 0.97860 1.21599 1.31818 1.13051 0.91258 0.92015 1.25771 0.95118 0.95661 1.02140 1.70026 1.37442 1.24022 1.24418 0.85510 0.78392 0.79065 0.78061 1.18483 1.21041 1.20300 1.48285 1.49233 1.13611 1.22345 1.21864 1.01296 0.80073 1.02862 1.21687 0.78004 0.86761 0.85907 1.90623 1.60298 1.20285 1.78587 1.21672 1.02319 0.99409 0.92581 1.21139 0.98968 0.97990 0.94908 1.20136 0.98453 0.94156 0.92866 1.26187 0.90075 0.99117 0.95726 1.75885 1.13592 1.12062 1.16345 1.78882 1.14101 1.09419 1.03842 1.47851 1.01251 1.29282 1.27489 0.65088 1.74702 1.16359 1.10230 1.14596 0.91667 0.93151 0.96119 0.92714 0.92621 0.87690 0.91587 0.85117 0.86004 0.93648 0.92951 0.85664 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.95 71.98 0.64 -5.79 16 2 C 0.26 13.67 2.64 44.25 0.12 13.78 16 3 H 0.00 0.22 6.90 -2.39 -0.02 0.20 16 4 C -0.54 -29.64 8.37 25.60 0.21 -29.42 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.24 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.60 -24.97 2.75 -826.77 -2.28 -27.24 16 13 C 0.08 2.34 9.48 127.77 1.21 3.55 16 14 C 0.49 19.41 7.67 87.66 0.67 20.08 16 15 O -0.61 -31.64 15.31 -3.04 -0.05 -31.69 16 16 C -0.12 -2.82 4.25 29.85 0.13 -2.70 16 17 C -0.09 -2.23 4.49 30.59 0.14 -2.09 16 18 C -0.02 -0.27 5.84 29.84 0.17 -0.09 16 19 C 0.17 3.78 7.62 138.55 1.06 4.83 16 20 N -0.31 -7.83 12.50 -51.26 -0.64 -8.47 16 21 N -0.07 -1.48 13.48 37.02 0.50 -0.98 16 22 N -0.21 -3.29 7.91 37.00 0.29 -2.99 16 23 H 0.49 2.81 8.96 -347.66 -3.12 -0.31 16 24 N -0.31 -6.13 12.36 -51.19 -0.63 -6.76 16 25 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 26 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 31 H 0.07 1.99 6.43 -2.39 -0.02 1.97 16 32 H 0.13 2.05 7.40 -2.39 -0.02 2.03 16 33 H 0.12 2.20 8.11 -2.39 -0.02 2.18 16 34 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -80.37 312.80 2.25 -78.12 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.02 Total: 5.01 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.80 Total: 3.29 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -2.51 Total: -100.21 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -80.37 2.25 -78.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602095097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.308 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds