Wall clock time and date at job start Mon Mar 30 2020 00:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47504 * 2 1 4 4 C 1.46902 * 110.99949 * 64.44420 * 3 2 1 5 5 C 1.50697 * 109.47281 * 71.51159 * 4 3 2 6 6 C 1.33386 * 125.20875 * 84.09408 * 5 4 3 7 7 C 1.38413 * 114.92549 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.92361 * 359.97438 * 7 6 5 9 9 S 1.75886 * 125.20043 * 263.78938 * 5 4 3 10 10 C 1.46894 * 110.99865 * 300.49093 * 3 2 1 11 11 C 1.53000 * 109.47147 * 293.95176 * 10 3 2 12 12 H 1.08998 * 109.47475 * 55.00254 * 11 10 3 13 13 C 1.53001 * 109.47343 * 294.99785 * 11 10 3 14 14 C 1.52997 * 109.47110 * 175.00029 * 11 10 3 15 15 C 1.50707 * 109.47189 * 184.99900 * 14 11 10 16 16 H 1.07998 * 119.99881 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00240 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99822 * 0.28070 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47034 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47334 * 120.00132 * 19 17 15 22 22 H 1.48502 * 109.47080 * 239.99966 * 19 17 15 23 23 H 1.08998 * 109.47090 * 179.88373 * 1 2 3 24 24 H 1.09008 * 109.47104 * 299.88671 * 1 2 3 25 25 H 1.09005 * 109.47049 * 59.88368 * 1 2 3 26 26 H 1.09001 * 109.47440 * 239.99781 * 2 1 3 27 27 H 1.08998 * 109.47288 * 120.00027 * 2 1 3 28 28 H 1.09005 * 109.46999 * 191.51215 * 4 3 2 29 29 H 1.09001 * 109.46783 * 311.50852 * 4 3 2 30 30 H 1.08004 * 122.53254 * 359.95599 * 6 5 4 31 31 H 1.08004 * 122.53898 * 180.02562 * 7 6 5 32 32 H 1.08001 * 125.20851 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47092 * 173.95287 * 10 3 2 34 34 H 1.09000 * 109.47662 * 53.95516 * 10 3 2 35 35 H 1.09010 * 109.46666 * 59.99968 * 13 11 10 36 36 H 1.08997 * 109.47169 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47218 * 300.00627 * 13 11 10 38 38 H 1.09000 * 109.47604 * 65.00330 * 14 11 10 39 39 H 1.09000 * 109.47594 * 305.00112 * 14 11 10 40 40 H 0.96995 * 119.99931 * 359.72057 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6375 2.0785 1.2373 5 6 2.4469 1.5371 2.3873 6 6 3.6745 1.9389 2.7202 7 6 4.2211 1.2962 3.8175 8 6 3.4373 0.3728 4.3762 9 16 1.9144 0.2839 3.5006 10 6 1.5392 2.1132 -1.1817 11 6 2.1607 1.5074 -2.4418 12 1 1.9485 0.4388 -2.4739 13 6 3.6748 1.7263 -2.4195 14 6 1.5660 2.1828 -3.6791 15 6 2.0852 1.5040 -4.9204 16 1 2.7706 0.6737 -4.8352 17 6 1.6846 1.9423 -6.1647 18 7 0.8536 2.9564 -6.2685 19 14 2.3277 1.1005 -7.7032 20 1 3.2467 -0.0005 -7.3177 21 1 1.1881 0.5465 -8.4775 22 1 3.0602 2.0867 -8.5377 23 1 -0.3633 -1.0276 -0.0021 24 1 -0.3634 0.5121 0.8911 25 1 -0.3633 0.5157 -0.8890 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8287 3.1462 1.1292 29 1 0.5771 1.9172 1.4314 30 1 4.2020 2.7073 2.1746 31 1 5.2073 1.5257 4.1934 32 1 3.6965 -0.2259 5.2368 33 1 1.8257 3.1620 -1.1035 34 1 0.4534 2.0366 -1.2392 35 1 4.0985 1.2451 -1.5379 36 1 4.1176 1.2943 -3.3170 37 1 3.8870 2.7949 -2.3874 38 1 1.8534 3.2341 -3.6928 39 1 0.4792 2.1036 -3.6493 40 1 0.5194 3.3933 -5.4696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602434976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:38 Heat of formation + Delta-G solvation = 18.640482 kcal Electronic energy + Delta-G solvation = -18323.641088 eV Core-core repulsion = 15650.498591 eV Total energy + Delta-G solvation = -2673.142497 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.86199 -37.46316 -34.79239 -32.22838 -31.16736 -29.23640 -26.58443 -26.15343 -25.05478 -23.49054 -22.76143 -20.77534 -19.16902 -18.73642 -17.08017 -16.78557 -15.82670 -15.59708 -15.29289 -14.26312 -13.92555 -13.70275 -13.35300 -12.96492 -12.83670 -12.76518 -12.58718 -12.18946 -11.99639 -11.69946 -11.58898 -11.34035 -11.21105 -10.95706 -10.85194 -10.72315 -10.52809 -10.22742 -10.08642 -9.65939 -9.41470 -8.76499 -8.53091 -8.43892 -8.26796 -8.02461 -6.30153 -3.97967 0.92340 1.55567 1.92386 2.70012 3.46625 3.50518 3.63847 4.20927 4.58941 4.72676 4.95031 5.11840 5.17247 5.29661 5.45141 5.46481 5.51857 5.53065 5.59068 5.65143 5.76817 5.96451 6.04208 6.08163 6.16476 6.25379 6.31034 6.35606 6.44493 6.50618 6.64372 6.91832 7.07439 7.14559 7.28359 7.34096 7.46134 7.63107 8.30184 8.54060 8.95636 9.73405 11.10417 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.003767 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.653278 B = 7431.911836 C = 7635.569434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.116 3.884 5 C -0.152 4.152 6 C -0.127 4.127 7 C -0.131 4.131 8 C -0.221 4.221 9 S 0.082 5.918 10 C 0.055 3.945 11 C -0.072 4.072 12 H 0.058 0.942 13 C -0.122 4.122 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 1.072 2.928 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.288 1.288 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.006 0.994 39 H 0.002 0.998 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -4.149 20.857 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.247 5.247 4 C -0.014 4.014 5 C -0.270 4.270 6 C -0.158 4.158 7 C -0.162 4.162 8 C -0.356 4.356 9 S 0.345 5.655 10 C -0.072 4.072 11 C -0.091 4.091 12 H 0.076 0.924 13 C -0.179 4.179 14 C -0.023 4.023 15 C -0.630 4.630 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.555 5.555 19 Si 0.901 3.099 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.214 1.214 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.916 -4.998 19.346 20.073 hybrid contribution 0.476 0.790 1.645 1.886 sum 2.392 -4.208 20.991 21.542 Atomic orbital electron populations 1.22420 0.98537 1.02308 1.01959 1.22241 0.92730 0.90525 1.02939 1.62269 1.59388 1.02210 1.00877 1.20607 0.95559 0.98303 0.86893 1.24415 0.99569 1.01712 1.01295 1.20116 0.94752 1.02855 0.98060 1.20192 1.01205 0.97599 0.97184 1.25550 0.98083 1.05855 1.06151 1.84269 1.18015 1.38749 1.24490 1.22418 0.97397 0.97551 0.89791 1.21060 0.95707 0.99495 0.92832 0.92383 1.21571 0.95812 1.00180 1.00347 1.19258 0.94989 0.95563 0.92537 1.22084 1.30286 1.18573 0.92048 0.93150 1.25809 0.95337 0.96366 1.01584 1.70721 1.30529 1.21171 1.33057 0.83509 0.75897 0.75421 0.75108 1.21541 1.21480 1.21437 0.92148 0.93145 0.91595 0.89831 0.91135 0.89215 0.93464 0.84188 0.84510 0.82257 0.91437 0.94670 0.93747 0.92732 0.94361 0.97569 0.97965 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 9.27 37.16 0.34 -2.19 16 2 C 0.04 0.62 5.69 -3.82 -0.02 0.60 16 3 N -0.52 -7.70 4.11 -236.07 -0.97 -8.68 16 4 C 0.12 1.46 5.34 -4.98 -0.03 1.44 16 5 C -0.15 -1.83 5.30 -36.01 -0.19 -2.02 16 6 C -0.13 -1.46 10.05 -41.21 -0.41 -1.88 16 7 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 8 C -0.22 -2.14 11.23 29.04 0.33 -1.82 16 9 S 0.08 0.88 22.36 -107.50 -2.40 -1.52 16 10 C 0.06 0.94 4.09 -3.83 -0.02 0.92 16 11 C -0.07 -1.48 2.26 -90.62 -0.20 -1.68 16 12 H 0.06 1.23 6.35 -51.93 -0.33 0.90 16 13 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 14 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 15 C -0.59 -16.79 8.41 -34.44 -0.29 -17.08 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.37 13.65 55.43 0.76 -27.61 16 19 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.61 6.29 -51.92 -0.33 0.28 16 25 H 0.07 0.98 6.26 -51.93 -0.33 0.65 16 26 H 0.08 1.30 6.39 -51.93 -0.33 0.96 16 27 H 0.07 0.94 6.48 -51.93 -0.34 0.60 16 28 H 0.09 1.08 7.82 -51.93 -0.41 0.68 16 29 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 30 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 34 H 0.04 0.60 5.98 -51.93 -0.31 0.29 16 35 H 0.04 0.80 7.75 -51.92 -0.40 0.40 16 36 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 39 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 40 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -30.32 326.13 -9.83 -40.14 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.25 Total: -0.87 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -0.78 Total: -27.02 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.21 Total: -36.29 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.40 Total: -1.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.32 -9.83 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602434976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.783 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds