Wall clock time and date at job start Mon Mar 30 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47504 * 2 1 4 4 C 1.46902 * 110.99949 * 64.44420 * 3 2 1 5 5 C 1.50697 * 109.47281 * 71.51159 * 4 3 2 6 6 C 1.33386 * 125.20875 * 84.09408 * 5 4 3 7 7 C 1.38413 * 114.92549 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.92361 * 359.97438 * 7 6 5 9 9 S 1.75886 * 125.20043 * 263.78938 * 5 4 3 10 10 C 1.46894 * 110.99865 * 300.49093 * 3 2 1 11 11 C 1.53000 * 109.47147 * 293.95176 * 10 3 2 12 12 H 1.08998 * 109.47475 * 55.00254 * 11 10 3 13 13 C 1.53001 * 109.47343 * 294.99785 * 11 10 3 14 14 C 1.52997 * 109.47110 * 175.00029 * 11 10 3 15 15 C 1.50707 * 109.47189 * 184.99900 * 14 11 10 16 16 H 1.07998 * 119.99881 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00240 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99822 * 0.28070 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47034 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47334 * 120.00132 * 19 17 15 22 22 H 1.48502 * 109.47080 * 239.99966 * 19 17 15 23 23 H 1.08998 * 109.47090 * 179.88373 * 1 2 3 24 24 H 1.09008 * 109.47104 * 299.88671 * 1 2 3 25 25 H 1.09005 * 109.47049 * 59.88368 * 1 2 3 26 26 H 1.09001 * 109.47440 * 239.99781 * 2 1 3 27 27 H 1.08998 * 109.47288 * 120.00027 * 2 1 3 28 28 H 1.09005 * 109.46999 * 191.51215 * 4 3 2 29 29 H 1.09001 * 109.46783 * 311.50852 * 4 3 2 30 30 H 1.08004 * 122.53254 * 359.95599 * 6 5 4 31 31 H 1.08004 * 122.53898 * 180.02562 * 7 6 5 32 32 H 1.08001 * 125.20851 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47092 * 173.95287 * 10 3 2 34 34 H 1.09000 * 109.47662 * 53.95516 * 10 3 2 35 35 H 1.09010 * 109.46666 * 59.99968 * 13 11 10 36 36 H 1.08997 * 109.47169 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47218 * 300.00627 * 13 11 10 38 38 H 1.09000 * 109.47604 * 65.00330 * 14 11 10 39 39 H 1.09000 * 109.47594 * 305.00112 * 14 11 10 40 40 H 0.96995 * 119.99931 * 359.72057 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6375 2.0785 1.2373 5 6 2.4469 1.5371 2.3873 6 6 3.6745 1.9389 2.7202 7 6 4.2211 1.2962 3.8175 8 6 3.4373 0.3728 4.3762 9 16 1.9144 0.2839 3.5006 10 6 1.5392 2.1132 -1.1817 11 6 2.1607 1.5074 -2.4418 12 1 1.9485 0.4388 -2.4739 13 6 3.6748 1.7263 -2.4195 14 6 1.5660 2.1828 -3.6791 15 6 2.0852 1.5040 -4.9204 16 1 2.7706 0.6737 -4.8352 17 6 1.6846 1.9423 -6.1647 18 7 0.8536 2.9564 -6.2685 19 14 2.3277 1.1005 -7.7032 20 1 3.2467 -0.0005 -7.3177 21 1 1.1881 0.5465 -8.4775 22 1 3.0602 2.0867 -8.5377 23 1 -0.3633 -1.0276 -0.0021 24 1 -0.3634 0.5121 0.8911 25 1 -0.3633 0.5157 -0.8890 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8287 3.1462 1.1292 29 1 0.5771 1.9172 1.4314 30 1 4.2020 2.7073 2.1746 31 1 5.2073 1.5257 4.1934 32 1 3.6965 -0.2259 5.2368 33 1 1.8257 3.1620 -1.1035 34 1 0.4534 2.0366 -1.2392 35 1 4.0985 1.2451 -1.5379 36 1 4.1176 1.2943 -3.3170 37 1 3.8870 2.7949 -2.3874 38 1 1.8534 3.2341 -3.6928 39 1 0.4792 2.1036 -3.6493 40 1 0.5194 3.3933 -5.4696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602434976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:37 Heat of formation + Delta-G solvation = 2.302087 kcal Electronic energy + Delta-G solvation = -18324.349574 eV Core-core repulsion = 15650.498591 eV Total energy + Delta-G solvation = -2673.850983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03188 -38.42264 -36.55851 -34.20475 -32.16300 -30.43404 -28.43583 -27.45966 -26.29679 -25.00526 -24.11767 -22.10944 -20.31240 -19.96333 -18.89632 -17.93619 -17.01828 -16.77997 -16.28955 -15.78761 -15.61028 -15.30908 -14.84588 -14.30589 -13.89976 -13.76067 -13.52984 -13.48754 -13.47739 -13.14246 -13.02313 -12.83801 -12.60701 -12.46797 -12.35720 -11.95855 -11.93101 -11.81166 -11.62905 -11.32230 -11.25993 -10.55746 -10.51163 -9.60441 -9.35517 -9.19396 -8.64249 -6.32912 0.10454 0.74653 1.12647 1.52265 1.61725 1.78020 1.88639 2.57564 3.03512 3.19804 3.78148 3.93131 4.07079 4.18242 4.25147 4.28280 4.32970 4.43211 4.51314 4.53851 4.71599 4.73326 4.76666 4.80356 4.85636 4.97046 5.04837 5.09948 5.22677 5.28509 5.35428 5.38787 5.45163 5.50644 5.63435 5.65971 6.00794 6.10001 6.13431 6.24792 6.64497 7.47523 8.76594 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.003767 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.653278 B = 7431.911836 C = 7635.569434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.045 3.955 3 N -0.526 5.526 4 C 0.119 3.881 5 C -0.174 4.174 6 C -0.131 4.131 7 C -0.142 4.142 8 C -0.213 4.213 9 S 0.080 5.920 10 C 0.068 3.932 11 C -0.063 4.063 12 H 0.051 0.949 13 C -0.111 4.111 14 C 0.018 3.982 15 C -0.602 4.602 16 H 0.050 0.950 17 C -0.042 4.042 18 N -0.943 5.943 19 Si 1.119 2.881 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.142 0.858 31 H 0.158 0.842 32 H 0.185 0.815 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.036 0.964 38 H -0.013 1.013 39 H -0.018 1.018 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -5.243 22.317 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.083 4.083 3 N -0.249 5.249 4 C -0.010 4.010 5 C -0.292 4.292 6 C -0.162 4.162 7 C -0.172 4.172 8 C -0.349 4.349 9 S 0.343 5.657 10 C -0.059 4.059 11 C -0.082 4.082 12 H 0.070 0.930 13 C -0.168 4.168 14 C -0.020 4.020 15 C -0.640 4.640 16 H 0.068 0.932 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.941 3.059 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.202 0.798 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.005 0.995 39 H 0.000 1.000 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.940 -6.096 20.839 21.911 hybrid contribution 0.170 1.122 1.296 1.723 sum 3.111 -4.973 22.135 22.899 Atomic orbital electron populations 1.22348 0.97798 1.03019 1.01416 1.22219 0.93328 0.90080 1.02633 1.62198 1.59469 1.02412 1.00870 1.20581 0.96022 0.98355 0.86070 1.24346 1.00018 1.03008 1.01788 1.20332 0.94634 1.02786 0.98432 1.20421 1.02289 0.97628 0.96886 1.25916 0.97084 1.05529 1.06358 1.84252 1.18841 1.38197 1.24411 1.22113 0.96829 0.97537 0.89447 1.20872 0.96227 0.98669 0.92443 0.93024 1.21453 0.94964 1.00134 1.00267 1.19180 0.93819 0.94676 0.94299 1.22464 1.29849 1.18417 0.93285 0.93199 1.27352 0.94875 0.96246 1.05399 1.70859 1.32238 1.22621 1.32387 0.82907 0.76045 0.75188 0.71760 1.19493 1.20545 1.20549 0.90857 0.92018 0.93692 0.91503 0.89942 0.88881 0.93035 0.84079 0.82417 0.79759 0.91259 0.95085 0.91652 0.94721 0.94440 0.99471 0.99992 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.73 9.27 71.98 0.67 -4.07 16 2 C 0.05 1.23 5.69 86.30 0.49 1.73 16 3 N -0.53 -14.95 4.11 -900.80 -3.71 -18.66 16 4 C 0.12 2.85 5.34 85.56 0.46 3.30 16 5 C -0.17 -3.88 5.30 24.59 0.13 -3.75 16 6 C -0.13 -2.75 10.05 21.21 0.21 -2.54 16 7 C -0.14 -2.50 10.18 21.21 0.22 -2.28 16 8 C -0.21 -3.52 11.23 66.72 0.75 -2.77 16 9 S 0.08 1.55 22.36 -56.49 -1.26 0.28 16 10 C 0.07 2.32 4.09 86.30 0.35 2.67 16 11 C -0.06 -2.62 2.26 -10.79 -0.02 -2.64 16 12 H 0.05 2.20 6.35 -2.39 -0.02 2.19 16 13 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 14 C 0.02 0.93 3.76 29.85 0.11 1.04 16 15 C -0.60 -34.69 8.41 25.60 0.22 -34.47 16 16 H 0.05 2.83 7.06 -2.91 -0.02 2.81 16 17 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 18 N -0.94 -59.42 13.65 21.45 0.29 -59.13 16 19 Si 1.12 51.43 29.90 68.60 2.05 53.49 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.41 6.29 -2.38 -0.01 1.39 16 25 H 0.04 1.32 6.26 -2.38 -0.01 1.31 16 26 H 0.07 2.04 6.39 -2.39 -0.02 2.02 16 27 H 0.08 2.06 6.48 -2.39 -0.02 2.04 16 28 H 0.09 2.14 7.82 -2.38 -0.02 2.12 16 29 H 0.05 1.19 5.96 -2.39 -0.01 1.18 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.07 2.32 7.87 -2.39 -0.02 2.30 16 34 H 0.03 1.08 5.98 -2.39 -0.01 1.07 16 35 H 0.06 2.27 7.75 -2.38 -0.02 2.26 16 36 H 0.03 1.47 6.95 -2.39 -0.02 1.45 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H -0.01 -0.73 8.00 -2.39 -0.02 -0.75 16 39 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 40 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 Total: -1.00 -65.04 326.13 3.16 -61.88 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.11 Total: 11.63 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.68 Total: -49.49 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.41 Total: -77.79 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.49 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.26 Total: 0.28 kcal Total: -65.04 3.16 -61.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602434976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.178 kcal (2) G-P(sol) polarization free energy of solvation -65.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds