Wall clock time and date at job start Mon Mar 30 2020 00:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47182 * 239.99954 * 2 1 3 5 5 C 1.50697 * 109.47065 * 64.99678 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99715 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00656 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47417 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.47163 * 210.00316 * 9 7 5 12 12 H 1.48503 * 109.46960 * 330.00118 * 9 7 5 13 13 C 1.53002 * 109.47208 * 119.99729 * 2 1 3 14 14 N 1.46901 * 109.46896 * 294.99891 * 13 2 1 15 15 C 1.46903 * 110.99892 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.47251 * 325.00763 * 15 14 13 17 17 C 1.53005 * 109.46611 * 85.00318 * 15 14 13 18 18 C 1.52995 * 109.47497 * 205.00190 * 15 14 13 19 19 C 1.50702 * 109.47096 * 65.00324 * 18 15 14 20 20 C 1.33381 * 125.20592 * 89.99839 * 19 18 15 21 21 C 1.38427 * 114.92374 * 179.97438 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.47564 * 300.00092 * 1 2 3 25 25 H 1.08997 * 109.47438 * 60.00206 * 1 2 3 26 26 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47352 * 184.99884 * 4 2 1 28 28 H 1.08998 * 109.46765 * 304.99732 * 4 2 1 29 29 H 0.96995 * 120.00802 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46947 * 175.00084 * 13 2 1 31 31 H 1.08994 * 109.47096 * 54.99836 * 13 2 1 32 32 H 1.00893 * 111.00573 * 303.95277 * 14 13 2 33 33 H 1.08994 * 109.47427 * 60.00449 * 17 15 14 34 34 H 1.08997 * 109.46860 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.47292 * 299.99713 * 17 15 14 36 36 H 1.08996 * 109.46856 * 305.00269 * 18 15 14 37 37 H 1.08996 * 109.47050 * 185.00412 * 18 15 14 38 38 H 1.08001 * 122.53741 * 359.97438 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4018 -3.7282 8 7 2.6764 -1.5188 -3.8511 9 14 1.4996 0.5632 -5.2496 10 1 2.5650 1.5428 -5.5817 11 1 1.3129 -0.3705 -6.3891 12 1 0.2283 1.2845 -4.9873 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0376 2.4456 15 6 2.1248 -0.6269 3.6673 16 1 2.0808 -1.7077 3.5333 17 6 3.5685 -0.2063 3.9498 18 6 1.2360 -0.2224 4.8451 19 6 -0.1603 -0.7441 4.6231 20 6 -0.6098 -1.9337 5.0254 21 6 -1.9316 -2.1956 4.7083 22 6 -2.5540 -1.2208 4.0439 23 16 -1.4468 0.1229 3.7943 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7995 -1.2056 28 1 1.6054 -1.7198 -1.2950 29 1 2.9237 -1.8418 -4.7317 30 1 3.1263 -0.7994 1.2056 31 1 1.6054 -1.7197 1.2953 32 1 1.9881 0.9874 2.3967 33 1 3.6125 0.8745 4.0838 34 1 3.9199 -0.6996 4.8559 35 1 4.2017 -0.4945 3.1107 36 1 1.2096 0.8644 4.9238 37 1 1.6391 -0.6437 5.7659 38 1 0.0106 -2.6392 5.5582 39 1 -2.4204 -3.1211 4.9747 40 1 -3.5812 -1.2511 3.7118 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:09 Heat of formation + Delta-G solvation = 4.633004 kcal Electronic energy + Delta-G solvation = -18133.292753 eV Core-core repulsion = 15459.542846 eV Total energy + Delta-G solvation = -2673.749907 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.29596 -37.09861 -34.97267 -32.47481 -31.04411 -29.22138 -26.67998 -26.34807 -24.93130 -23.09743 -22.33653 -20.88717 -19.09593 -18.86915 -17.03455 -16.29786 -15.44081 -15.10395 -14.66516 -14.46030 -14.32618 -13.59507 -13.27578 -12.91523 -12.65584 -12.53616 -12.41090 -12.20101 -12.00722 -11.55524 -11.40351 -11.37725 -11.22950 -10.87607 -10.84106 -10.70436 -10.47245 -10.23537 -10.17825 -9.65009 -9.09293 -8.91576 -8.48509 -8.29803 -8.20366 -7.97384 -5.94546 -3.95378 1.19916 1.88136 2.26728 2.89154 3.34744 3.41058 3.44672 4.39482 4.52540 4.76159 5.04052 5.15755 5.19600 5.36324 5.40774 5.41308 5.63038 5.67158 5.69761 5.77699 5.84047 5.90490 6.02661 6.13345 6.24199 6.27068 6.44957 6.50420 6.61891 6.66168 6.77844 7.09053 7.26683 7.26916 7.43557 7.70751 7.75143 7.90441 8.06164 8.50542 9.11165 9.67829 11.17051 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.004327 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.484428 B = 6469.193362 C = 7160.161479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.679 5.679 15 C 0.086 3.914 16 H 0.078 0.922 17 C -0.182 4.182 18 C -0.039 4.039 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.136 4.136 22 C -0.235 4.235 23 S 0.140 5.860 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.336 0.664 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 1.603 19.898 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.309 5.309 15 C -0.025 4.025 16 H 0.096 0.904 17 C -0.241 4.241 18 C -0.079 4.079 19 C -0.264 4.264 20 C -0.192 4.192 21 C -0.167 4.167 22 C -0.371 4.371 23 S 0.405 5.595 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.412 2.619 19.093 20.017 hybrid contribution 0.854 -0.941 -0.439 1.344 sum -4.558 1.678 18.654 19.276 Atomic orbital electron populations 1.21589 0.95648 1.00494 1.00189 1.21178 0.96051 0.98755 0.94005 0.92986 1.19113 0.95785 0.95563 0.90538 1.21244 1.34439 1.08216 0.91003 0.92594 1.25015 0.95389 0.95077 0.99060 1.69963 1.39240 1.21249 1.23313 0.86645 0.78925 0.79819 0.82925 1.20796 1.21329 1.19880 1.22130 0.96994 0.97558 0.89418 1.60611 1.63537 1.05505 1.01227 1.21559 0.91100 0.99439 0.90438 0.90374 1.22501 0.97857 1.01621 1.02079 1.20208 0.88934 1.00819 0.97893 1.24297 0.99574 0.98628 1.03864 1.19986 0.96099 0.97279 1.05809 1.20030 0.94805 1.00159 1.01684 1.25635 1.03882 0.99510 1.08100 1.84350 1.01137 1.18587 1.55425 0.93510 0.93046 0.94399 0.97071 0.96661 0.93150 0.95892 0.91794 0.84611 0.92465 0.92380 0.92199 0.90921 0.90310 0.85164 0.85165 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.07 1.16 4.87 -3.82 -0.02 1.14 16 14 N -0.68 -9.38 5.42 -106.72 -0.58 -9.96 16 15 C 0.09 0.99 2.58 -67.71 -0.17 0.82 16 16 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 17 C -0.18 -1.84 9.16 37.16 0.34 -1.50 16 18 C -0.04 -0.40 5.39 -27.88 -0.15 -0.55 16 19 C -0.15 -1.75 5.49 -36.00 -0.20 -1.95 16 20 C -0.16 -1.90 10.05 -41.21 -0.41 -2.31 16 21 C -0.14 -1.58 10.18 -41.21 -0.42 -2.00 16 22 C -0.24 -2.80 11.23 29.04 0.33 -2.48 16 23 S 0.14 1.76 23.33 -107.50 -2.51 -0.75 16 24 H 0.05 0.82 7.75 -51.93 -0.40 0.42 16 25 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 31 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.34 4.45 8.47 -39.30 -0.33 4.11 16 33 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -30.11 340.10 -10.21 -40.31 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.85 Total: 0.38 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.11 Total: -25.44 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.16 Total: -36.52 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.11 -10.21 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.946 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds