Wall clock time and date at job start Mon Mar 30 2020 00:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47182 * 239.99954 * 2 1 3 5 5 C 1.50697 * 109.47065 * 64.99678 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99715 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00656 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47417 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.47163 * 210.00316 * 9 7 5 12 12 H 1.48503 * 109.46960 * 330.00118 * 9 7 5 13 13 C 1.53002 * 109.47208 * 119.99729 * 2 1 3 14 14 N 1.46901 * 109.46896 * 294.99891 * 13 2 1 15 15 C 1.46903 * 110.99892 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.47251 * 325.00763 * 15 14 13 17 17 C 1.53005 * 109.46611 * 85.00318 * 15 14 13 18 18 C 1.52995 * 109.47497 * 205.00190 * 15 14 13 19 19 C 1.50702 * 109.47096 * 65.00324 * 18 15 14 20 20 C 1.33381 * 125.20592 * 89.99839 * 19 18 15 21 21 C 1.38427 * 114.92374 * 179.97438 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.47564 * 300.00092 * 1 2 3 25 25 H 1.08997 * 109.47438 * 60.00206 * 1 2 3 26 26 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47352 * 184.99884 * 4 2 1 28 28 H 1.08998 * 109.46765 * 304.99732 * 4 2 1 29 29 H 0.96995 * 120.00802 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46947 * 175.00084 * 13 2 1 31 31 H 1.08994 * 109.47096 * 54.99836 * 13 2 1 32 32 H 1.00893 * 111.00573 * 303.95277 * 14 13 2 33 33 H 1.08994 * 109.47427 * 60.00449 * 17 15 14 34 34 H 1.08997 * 109.46860 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.47292 * 299.99713 * 17 15 14 36 36 H 1.08996 * 109.46856 * 305.00269 * 18 15 14 37 37 H 1.08996 * 109.47050 * 185.00412 * 18 15 14 38 38 H 1.08001 * 122.53741 * 359.97438 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4018 -3.7282 8 7 2.6764 -1.5188 -3.8511 9 14 1.4996 0.5632 -5.2496 10 1 2.5650 1.5428 -5.5817 11 1 1.3129 -0.3705 -6.3891 12 1 0.2283 1.2845 -4.9873 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0376 2.4456 15 6 2.1248 -0.6269 3.6673 16 1 2.0808 -1.7077 3.5333 17 6 3.5685 -0.2063 3.9498 18 6 1.2360 -0.2224 4.8451 19 6 -0.1603 -0.7441 4.6231 20 6 -0.6098 -1.9337 5.0254 21 6 -1.9316 -2.1956 4.7083 22 6 -2.5540 -1.2208 4.0439 23 16 -1.4468 0.1229 3.7943 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7995 -1.2056 28 1 1.6054 -1.7198 -1.2950 29 1 2.9237 -1.8418 -4.7317 30 1 3.1263 -0.7994 1.2056 31 1 1.6054 -1.7197 1.2953 32 1 1.9881 0.9874 2.3967 33 1 3.6125 0.8745 4.0838 34 1 3.9199 -0.6996 4.8559 35 1 4.2017 -0.4945 3.1107 36 1 1.2096 0.8644 4.9238 37 1 1.6391 -0.6437 5.7659 38 1 0.0106 -2.6392 5.5582 39 1 -2.4204 -3.1211 4.9747 40 1 -3.5812 -1.2511 3.7118 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602509728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:08 Heat of formation + Delta-G solvation = -11.713237 kcal Electronic energy + Delta-G solvation = -18134.001579 eV Core-core repulsion = 15459.542846 eV Total energy + Delta-G solvation = -2674.458733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.31170 -38.23323 -36.50917 -34.41801 -32.28992 -30.33430 -28.63228 -27.22362 -26.50442 -24.42903 -23.78255 -21.89467 -20.63438 -19.87771 -18.50171 -17.91734 -16.65674 -16.30204 -16.14061 -15.93747 -15.60410 -14.83258 -14.46581 -14.30028 -14.03281 -13.71104 -13.53370 -13.34866 -13.21620 -13.07351 -12.89355 -12.77634 -12.52048 -12.37248 -12.26622 -12.18275 -11.91080 -11.77180 -11.47369 -11.37390 -11.06747 -10.85899 -10.52855 -9.43932 -9.18453 -9.05561 -8.16875 -6.25928 0.29743 0.98210 1.36456 1.39968 1.41094 1.52176 2.00692 2.42373 3.16551 3.30509 3.88044 4.12131 4.20662 4.31588 4.35180 4.39845 4.51125 4.56689 4.63846 4.80793 4.85105 4.87843 4.93081 4.96241 5.03274 5.07267 5.16696 5.30098 5.31677 5.39473 5.50269 5.52862 5.56345 5.59814 5.77723 5.83537 5.90272 6.16643 6.33609 6.61168 6.90241 7.42369 8.95288 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.004327 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.484428 B = 6469.193362 C = 7160.161479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.085 3.915 14 N -0.676 5.676 15 C 0.088 3.912 16 H 0.065 0.935 17 C -0.175 4.175 18 C -0.033 4.033 19 C -0.152 4.152 20 C -0.170 4.170 21 C -0.144 4.144 22 C -0.244 4.244 23 S 0.107 5.893 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.026 0.974 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.261 0.739 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.343 0.657 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 2.524 21.052 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.044 4.044 14 N -0.306 5.306 15 C -0.023 4.023 16 H 0.084 0.916 17 C -0.234 4.234 18 C -0.073 4.073 19 C -0.270 4.270 20 C -0.200 4.200 21 C -0.174 4.174 22 C -0.380 4.380 23 S 0.372 5.628 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.784 3.552 20.271 21.377 hybrid contribution 0.966 -1.285 -0.741 1.770 sum -4.818 2.267 19.530 20.243 Atomic orbital electron populations 1.21460 0.94834 0.99877 1.00483 1.20989 0.96523 0.98375 0.93172 0.92713 1.19003 0.93964 0.94526 0.92937 1.21640 1.34299 1.08514 0.92083 0.92121 1.25945 0.95279 0.96069 1.02628 1.70100 1.40427 1.22975 1.24235 0.85519 0.79038 0.78401 0.78552 1.19805 1.20965 1.18779 1.21749 0.96299 0.96800 0.89573 1.60531 1.63761 1.05600 1.00747 1.21581 0.92454 0.98525 0.89708 0.91630 1.22424 0.96245 1.02476 1.02270 1.20229 0.87670 1.01392 0.97963 1.24543 1.00048 0.98692 1.03737 1.20288 0.96435 0.97531 1.05742 1.20350 0.95016 1.00796 1.01287 1.25883 1.04558 0.99200 1.08349 1.84390 1.02369 1.19718 1.56367 0.91048 0.94731 0.95436 0.99665 0.99619 0.92985 0.96434 0.93082 0.83887 0.91412 0.90441 0.93880 0.90196 0.87939 0.83499 0.83360 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -2.96 2.48 -10.79 -0.03 -2.99 16 3 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 4 C 0.03 1.78 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 13 C 0.09 2.93 4.87 86.30 0.42 3.35 16 14 N -0.68 -17.83 5.42 -491.56 -2.66 -20.49 16 15 C 0.09 1.87 2.58 44.91 0.12 1.99 16 16 H 0.07 1.59 7.80 -2.39 -0.02 1.57 16 17 C -0.18 -3.16 9.16 71.98 0.66 -2.50 16 18 C -0.03 -0.59 5.39 29.85 0.16 -0.43 16 19 C -0.15 -3.38 5.49 24.59 0.14 -3.25 16 20 C -0.17 -3.66 10.05 21.22 0.21 -3.45 16 21 C -0.14 -3.10 10.18 21.22 0.22 -2.89 16 22 C -0.24 -5.52 11.23 66.72 0.75 -4.77 16 23 S 0.11 2.57 23.33 -56.49 -1.32 1.25 16 24 H 0.07 2.45 7.75 -2.39 -0.02 2.43 16 25 H 0.03 1.45 6.95 -2.39 -0.02 1.43 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.02 0.62 7.44 -2.39 -0.02 0.60 16 31 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 32 H 0.34 8.46 8.47 -89.70 -0.76 7.70 16 33 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.93 7.45 -2.39 -0.02 0.91 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -65.13 340.10 2.66 -62.47 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.24 Total: 13.89 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 4.09 Total: -46.39 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.38 Total: -78.26 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Total: -65.13 2.66 -62.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.753 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds