Wall clock time and date at job start Mon Mar 30 2020 00:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47510 * 2 1 4 4 C 1.52994 * 109.47397 * 120.00546 * 2 1 3 5 5 C 1.50699 * 109.47058 * 294.99950 * 4 2 1 6 6 H 1.07994 * 119.99949 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00116 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47190 * 89.99975 * 9 7 5 11 11 H 1.48499 * 109.46875 * 209.99696 * 9 7 5 12 12 H 1.48502 * 109.47099 * 329.99463 * 9 7 5 13 13 C 1.53003 * 109.47093 * 240.00413 * 2 1 3 14 14 N 1.46908 * 109.46927 * 65.00037 * 13 2 1 15 15 C 1.46896 * 110.99806 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47446 * 324.99672 * 15 14 13 17 17 C 1.52999 * 109.47303 * 85.00016 * 15 14 13 18 18 C 1.53005 * 109.47339 * 204.99961 * 15 14 13 19 19 C 1.50702 * 109.46948 * 65.00010 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09004 * 109.47275 * 299.99871 * 1 2 3 25 25 H 1.09001 * 109.47428 * 59.99569 * 1 2 3 26 26 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47118 * 54.99883 * 4 2 1 28 28 H 1.09005 * 109.47712 * 174.99642 * 4 2 1 29 29 H 0.96995 * 120.00221 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47370 * 305.00361 * 13 2 1 31 31 H 1.08999 * 109.47166 * 184.99677 * 13 2 1 32 32 H 1.00896 * 110.99724 * 303.95231 * 14 13 2 33 33 H 1.09002 * 109.47151 * 59.99475 * 17 15 14 34 34 H 1.09000 * 109.47243 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47193 * 300.00068 * 17 15 14 36 36 H 1.09000 * 109.46850 * 305.00251 * 18 15 14 37 37 H 1.08995 * 109.47365 * 185.00259 * 18 15 14 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9924 -0.4025 3.7282 8 7 1.6450 0.2768 4.7994 9 14 2.9628 -1.9892 3.9025 10 1 4.4163 -1.6856 3.8789 11 1 2.6146 -2.6434 5.1894 12 1 2.6288 -2.8998 2.7780 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0377 -2.4457 15 6 2.1246 -0.6268 -3.6673 16 1 3.0882 -1.0984 -3.4744 17 6 1.1120 -1.6914 -4.0939 18 6 2.2778 0.4078 -4.7840 19 6 3.3631 1.3866 -4.4165 20 6 4.6556 1.2502 -4.7167 21 6 5.4691 2.2788 -4.2735 22 6 4.8381 3.2478 -3.6087 23 16 3.1195 2.8833 -3.5252 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6053 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 1.8922 -0.0461 5.6799 30 1 1.6053 -1.7197 -1.2954 31 1 3.1262 -0.7994 -1.2057 32 1 0.6528 0.1795 -2.4753 33 1 0.1484 -1.2198 -4.2868 34 1 1.4630 -2.1842 -5.0006 35 1 1.0028 -2.4286 -3.2983 36 1 1.3367 0.9416 -4.9164 37 1 2.5430 -0.0968 -5.7130 38 1 5.0382 0.4018 -5.2647 39 1 6.5347 2.2931 -4.4486 40 1 5.3100 4.1234 -3.1879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:14 Heat of formation + Delta-G solvation = 8.483483 kcal Electronic energy + Delta-G solvation = -18116.849437 eV Core-core repulsion = 15443.266499 eV Total energy + Delta-G solvation = -2673.582937 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.36972 -37.20756 -35.10249 -32.46149 -31.12876 -29.37053 -27.29142 -26.37415 -25.16806 -23.10844 -21.99927 -20.86344 -19.06403 -18.93417 -17.13729 -16.71647 -15.49563 -15.35126 -14.85160 -14.30769 -14.12975 -13.69718 -13.26199 -13.09067 -12.83795 -12.64810 -12.46935 -12.24680 -12.12388 -11.82937 -11.70495 -11.53124 -11.38144 -11.04588 -10.88168 -10.65608 -10.47700 -10.35651 -9.86929 -9.63337 -9.40641 -9.02450 -8.51545 -8.48417 -8.25945 -8.04739 -5.99122 -3.95609 1.18443 1.86977 2.25720 2.87396 3.33430 3.40605 3.44246 4.33960 4.49447 4.71073 4.98033 5.11605 5.18561 5.30157 5.34671 5.35675 5.58429 5.62550 5.65462 5.72368 5.74689 5.78036 5.92632 5.98554 6.06817 6.21662 6.24952 6.42000 6.43246 6.51119 6.62396 6.82603 7.01766 7.09667 7.30143 7.35124 7.54206 7.66655 7.86322 8.60884 9.06997 9.64116 11.14410 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.004663 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.343730 B = 6002.887739 C = 6567.281174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.065 3.935 14 N -0.680 5.680 15 C 0.085 3.915 16 H 0.078 0.922 17 C -0.182 4.182 18 C -0.039 4.039 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.137 4.137 22 C -0.234 4.234 23 S 0.141 5.859 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.013 0.987 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.339 0.661 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 0.486 -21.899 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.063 4.063 14 N -0.311 5.311 15 C -0.026 4.026 16 H 0.096 0.904 17 C -0.241 4.241 18 C -0.078 4.078 19 C -0.266 4.266 20 C -0.191 4.191 21 C -0.168 4.168 22 C -0.370 4.370 23 S 0.406 5.594 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.865 1.664 -21.027 21.175 hybrid contribution 1.316 -2.336 -0.251 2.693 sum 3.181 -0.672 -21.278 21.525 Atomic orbital electron populations 1.21734 0.96298 1.00367 1.00748 1.21012 0.95116 1.00235 0.92994 0.91006 1.19597 0.95534 0.95976 0.93512 1.21139 1.35243 1.09432 0.89084 0.90819 1.25023 0.95708 0.96858 0.95977 1.69915 1.47338 1.39286 0.97987 0.86818 0.80708 0.84591 0.77376 1.20395 1.21525 1.19160 1.22142 1.00023 0.94421 0.89727 1.60637 1.19583 1.49895 1.01030 1.21571 0.98531 0.92073 0.90432 0.90361 1.22503 0.99894 0.99851 1.01808 1.20201 0.95717 0.94296 0.97613 1.24298 0.98027 1.00154 1.04140 1.19982 0.92469 1.00970 1.05688 1.20030 1.00745 0.94747 1.01243 1.25654 0.98152 1.04969 1.08203 1.84402 1.05427 1.15707 1.53854 0.91432 0.94736 0.94206 0.96919 0.97225 0.92874 0.95937 0.91748 0.84217 0.92425 0.92300 0.92303 0.90888 0.90266 0.85183 0.85144 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.15 0.33 -2.12 16 2 C -0.07 -1.47 2.54 -90.63 -0.23 -1.70 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.08 27.47 -169.99 -4.67 17.42 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.07 1.06 4.94 -3.82 -0.02 1.05 16 14 N -0.68 -9.16 5.96 -106.72 -0.64 -9.80 16 15 C 0.09 0.95 2.58 -67.71 -0.17 0.77 16 16 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 17 C -0.18 -1.73 9.16 37.16 0.34 -1.39 16 18 C -0.04 -0.39 5.39 -27.88 -0.15 -0.54 16 19 C -0.15 -1.77 5.49 -36.00 -0.20 -1.96 16 20 C -0.16 -1.87 10.05 -41.21 -0.41 -2.28 16 21 C -0.14 -1.59 10.18 -41.21 -0.42 -2.01 16 22 C -0.23 -2.81 11.23 29.04 0.33 -2.49 16 23 S 0.14 1.80 23.33 -107.50 -2.51 -0.71 16 24 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 25 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.02 0.36 7.43 -51.93 -0.39 -0.03 16 31 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 32 H 0.34 4.36 6.72 -39.29 -0.26 4.10 16 33 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -30.51 334.24 -9.81 -40.32 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.69 Total: 1.19 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -1.12 Total: -26.02 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.14 Total: -37.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.42 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.51 -9.81 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.802 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds