Wall clock time and date at job start Mon Mar 30 2020 00:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47510 * 2 1 4 4 C 1.52994 * 109.47397 * 120.00546 * 2 1 3 5 5 C 1.50699 * 109.47058 * 294.99950 * 4 2 1 6 6 H 1.07994 * 119.99949 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00116 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47190 * 89.99975 * 9 7 5 11 11 H 1.48499 * 109.46875 * 209.99696 * 9 7 5 12 12 H 1.48502 * 109.47099 * 329.99463 * 9 7 5 13 13 C 1.53003 * 109.47093 * 240.00413 * 2 1 3 14 14 N 1.46908 * 109.46927 * 65.00037 * 13 2 1 15 15 C 1.46896 * 110.99806 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47446 * 324.99672 * 15 14 13 17 17 C 1.52999 * 109.47303 * 85.00016 * 15 14 13 18 18 C 1.53005 * 109.47339 * 204.99961 * 15 14 13 19 19 C 1.50702 * 109.46948 * 65.00010 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09004 * 109.47275 * 299.99871 * 1 2 3 25 25 H 1.09001 * 109.47428 * 59.99569 * 1 2 3 26 26 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47118 * 54.99883 * 4 2 1 28 28 H 1.09005 * 109.47712 * 174.99642 * 4 2 1 29 29 H 0.96995 * 120.00221 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47370 * 305.00361 * 13 2 1 31 31 H 1.08999 * 109.47166 * 184.99677 * 13 2 1 32 32 H 1.00896 * 110.99724 * 303.95231 * 14 13 2 33 33 H 1.09002 * 109.47151 * 59.99475 * 17 15 14 34 34 H 1.09000 * 109.47243 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47193 * 300.00068 * 17 15 14 36 36 H 1.09000 * 109.46850 * 305.00251 * 18 15 14 37 37 H 1.08995 * 109.47365 * 185.00259 * 18 15 14 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9924 -0.4025 3.7282 8 7 1.6450 0.2768 4.7994 9 14 2.9628 -1.9892 3.9025 10 1 4.4163 -1.6856 3.8789 11 1 2.6146 -2.6434 5.1894 12 1 2.6288 -2.8998 2.7780 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0377 -2.4457 15 6 2.1246 -0.6268 -3.6673 16 1 3.0882 -1.0984 -3.4744 17 6 1.1120 -1.6914 -4.0939 18 6 2.2778 0.4078 -4.7840 19 6 3.3631 1.3866 -4.4165 20 6 4.6556 1.2502 -4.7167 21 6 5.4691 2.2788 -4.2735 22 6 4.8381 3.2478 -3.6087 23 16 3.1195 2.8833 -3.5252 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6053 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 1.8922 -0.0461 5.6799 30 1 1.6053 -1.7197 -1.2954 31 1 3.1262 -0.7994 -1.2057 32 1 0.6528 0.1795 -2.4753 33 1 0.1484 -1.2198 -4.2868 34 1 1.4630 -2.1842 -5.0006 35 1 1.0028 -2.4286 -3.2983 36 1 1.3367 0.9416 -4.9164 37 1 2.5430 -0.0968 -5.7130 38 1 5.0382 0.4018 -5.2647 39 1 6.5347 2.2931 -4.4486 40 1 5.3100 4.1234 -3.1879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602509730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:14 Heat of formation + Delta-G solvation = -9.166256 kcal Electronic energy + Delta-G solvation = -18117.614787 eV Core-core repulsion = 15443.266499 eV Total energy + Delta-G solvation = -2674.348287 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.35847 -38.29747 -36.52090 -34.44367 -32.37533 -30.46418 -29.05328 -27.21397 -26.61958 -24.17269 -23.64812 -21.78079 -20.61243 -19.90050 -18.96197 -17.96089 -16.70816 -16.43518 -16.06433 -15.88734 -15.51413 -14.85854 -14.81069 -14.26840 -14.05424 -13.78267 -13.67428 -13.46027 -13.34143 -13.17973 -12.95728 -12.77393 -12.47988 -12.34400 -12.27814 -12.08508 -11.77062 -11.73438 -11.44349 -11.38353 -11.14487 -11.01571 -10.73417 -9.45504 -9.22262 -9.05928 -8.26000 -6.27941 0.28348 0.96280 1.34990 1.35293 1.36050 1.47962 1.99457 2.37226 3.09237 3.30012 3.87725 4.12841 4.23025 4.25702 4.32823 4.35796 4.44564 4.50893 4.63712 4.74405 4.78957 4.85392 4.88828 4.94657 4.98187 5.03471 5.09169 5.15074 5.31088 5.32612 5.37084 5.39713 5.54682 5.57273 5.72643 5.74622 5.77776 6.22080 6.36343 6.61565 6.79645 7.35459 8.90893 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.004663 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.343730 B = 6002.887739 C = 6567.281174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.049 0.951 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.247 1.247 13 C 0.082 3.918 14 N -0.685 5.685 15 C 0.088 3.912 16 H 0.070 0.930 17 C -0.175 4.175 18 C -0.035 4.035 19 C -0.150 4.150 20 C -0.168 4.168 21 C -0.142 4.142 22 C -0.246 4.246 23 S 0.096 5.904 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.017 0.983 28 H 0.010 0.990 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.343 0.657 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -1.589 -24.296 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.047 4.047 14 N -0.317 5.317 15 C -0.023 4.023 16 H 0.088 0.912 17 C -0.234 4.234 18 C -0.074 4.074 19 C -0.268 4.268 20 C -0.198 4.198 21 C -0.172 4.172 22 C -0.381 4.381 23 S 0.360 5.640 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.606 -0.409 -23.456 23.604 hybrid contribution 1.074 -1.587 0.462 1.971 sum 3.681 -1.996 -22.994 23.372 Atomic orbital electron populations 1.21630 0.95247 1.00866 1.00593 1.20864 0.95980 0.98866 0.93162 0.93240 1.19551 0.95541 0.95810 0.93447 1.21453 1.34284 1.08538 0.91227 0.94744 1.25984 0.97029 1.00870 0.95542 1.70073 1.49193 1.41579 0.98694 0.85712 0.79143 0.80068 0.78030 1.19536 1.21048 1.17067 1.21799 0.99297 0.94438 0.89159 1.60557 1.19992 1.50046 1.01072 1.21593 0.98529 0.92678 0.89500 0.91196 1.22425 0.99721 0.99026 1.02223 1.20259 0.95390 0.93711 0.98052 1.24562 0.98824 0.99713 1.03718 1.20296 0.92397 1.01520 1.05616 1.20368 1.01869 0.94444 1.00553 1.25874 0.97543 1.05867 1.08840 1.84529 1.06880 1.17470 1.55111 0.94902 0.91581 0.93273 0.96424 0.97157 0.92704 0.95018 0.92600 0.83710 0.91657 0.90436 0.93311 0.90450 0.87754 0.83150 0.83210 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16 2 C -0.07 -2.73 2.54 -10.80 -0.03 -2.76 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.16 16 5 C -0.52 -30.23 8.96 25.60 0.23 -30.00 16 6 H 0.03 2.22 7.30 -2.91 -0.02 2.20 16 7 C 0.00 0.11 5.47 84.65 0.46 0.57 16 8 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 9 Si 0.95 45.31 27.47 68.60 1.88 47.20 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 13 C 0.08 2.53 4.94 86.30 0.43 2.96 16 14 N -0.68 -17.10 5.96 -491.55 -2.93 -20.03 16 15 C 0.09 1.70 2.58 44.92 0.12 1.82 16 16 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 17 C -0.18 -2.72 9.16 71.98 0.66 -2.06 16 18 C -0.03 -0.59 5.39 29.85 0.16 -0.43 16 19 C -0.15 -3.30 5.49 24.59 0.14 -3.17 16 20 C -0.17 -3.53 10.05 21.22 0.21 -3.32 16 21 C -0.14 -3.05 10.18 21.22 0.22 -2.83 16 22 C -0.25 -5.74 11.23 66.72 0.75 -4.99 16 23 S 0.10 2.40 23.33 -56.49 -1.32 1.09 16 24 H 0.03 1.39 6.95 -2.39 -0.02 1.37 16 25 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.02 0.82 7.20 -2.38 -0.02 0.80 16 28 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.03 0.92 7.43 -2.39 -0.02 0.91 16 31 H 0.06 1.82 8.06 -2.39 -0.02 1.80 16 32 H 0.34 8.03 6.72 -89.70 -0.60 7.43 16 33 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -67.20 334.24 2.35 -64.85 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.34 Total: 15.94 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 4.08 Total: -48.29 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.63 Total: -80.78 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.20 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.09 kcal Total: -67.20 2.35 -64.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.684 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds