Wall clock time and date at job start Mon Mar 30 2020 00:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47744 * 2 1 4 4 C 1.52997 * 109.47120 * 239.99470 * 2 1 3 5 5 C 1.50697 * 109.47056 * 65.00297 * 4 2 1 6 6 H 1.08003 * 120.00378 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00289 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00508 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99665 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46796 * 90.00442 * 9 7 5 11 11 H 1.48501 * 109.46730 * 209.99891 * 9 7 5 12 12 H 1.48493 * 109.47011 * 330.00101 * 9 7 5 13 13 C 1.53008 * 109.46880 * 119.99941 * 2 1 3 14 14 N 1.46894 * 109.46990 * 294.99647 * 13 2 1 15 15 C 1.46900 * 111.00164 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.47101 * 35.00355 * 15 14 13 17 17 C 1.52999 * 109.47028 * 275.00056 * 15 14 13 18 18 C 1.53005 * 109.47049 * 155.00263 * 15 14 13 19 19 C 1.50702 * 109.46948 * 294.99925 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.08999 * 109.47744 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47099 * 300.00550 * 1 2 3 26 26 H 1.09009 * 109.47053 * 60.00144 * 1 2 3 27 27 H 1.08998 * 109.47374 * 185.00617 * 4 2 1 28 28 H 1.09006 * 109.47107 * 305.00548 * 4 2 1 29 29 H 0.97005 * 120.00234 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46959 * 174.99853 * 13 2 1 31 31 H 1.08995 * 109.46928 * 54.99243 * 13 2 1 32 32 H 1.00903 * 111.00002 * 303.96010 * 14 13 2 33 33 H 1.09003 * 109.47331 * 299.99623 * 17 15 14 34 34 H 1.09001 * 109.46947 * 59.99614 * 17 15 14 35 35 H 1.08999 * 109.47021 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.46850 * 175.00166 * 18 15 14 37 37 H 1.08995 * 109.47365 * 55.00174 * 18 15 14 38 38 H 1.08002 * 122.53744 * 0.02562 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3758 7 6 1.9923 -0.4025 -3.7283 8 7 1.6449 0.2769 -4.7994 9 14 2.9627 -1.9892 -3.9026 10 1 2.0234 -3.1335 -4.0188 11 1 3.8107 -1.9195 -5.1197 12 1 3.8251 -2.1758 -2.7083 13 6 2.0399 -0.7213 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1257 -0.6264 3.6672 16 1 3.0894 -1.0974 3.4739 17 6 1.1139 -1.6916 4.0944 18 6 2.2786 0.4086 4.7836 19 6 3.3631 1.3881 4.4154 20 6 3.1772 2.5231 3.7399 21 6 4.3251 3.2640 3.5171 22 6 5.4439 2.7281 4.0072 23 16 5.0678 1.2090 4.8099 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 3.1263 -0.7997 -1.2055 28 1 1.6052 -1.7199 -1.2950 29 1 1.8916 -0.0465 -5.6800 30 1 3.1262 -0.7995 1.2057 31 1 1.6052 -1.7197 1.2953 32 1 1.9881 0.9874 2.3966 33 1 0.1501 -1.2206 4.2878 34 1 1.0049 -2.4289 3.2991 35 1 1.4661 -2.1845 5.0006 36 1 2.5446 -0.0957 5.7126 37 1 1.3372 0.9417 4.9163 38 1 2.2048 2.8400 3.3930 39 1 4.3160 4.2026 2.9829 40 1 6.4297 3.1617 3.9255 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:17 Heat of formation + Delta-G solvation = 7.729614 kcal Electronic energy + Delta-G solvation = -18139.566217 eV Core-core repulsion = 15465.950589 eV Total energy + Delta-G solvation = -2673.615627 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.68010 -37.07811 -35.10499 -32.45020 -31.08117 -29.68744 -27.29121 -26.46837 -25.07038 -23.23933 -22.05581 -20.55401 -19.39814 -18.97882 -17.18443 -16.73042 -15.95906 -15.47534 -14.97537 -14.28849 -14.09240 -13.73607 -13.26159 -13.16141 -12.87344 -12.67699 -12.50429 -12.37778 -11.92043 -11.71267 -11.66929 -11.59780 -11.40349 -10.96365 -10.93237 -10.83576 -10.63550 -10.38079 -9.74397 -9.70429 -9.36596 -9.02112 -8.74251 -8.60202 -8.48681 -8.12913 -5.99118 -3.95625 0.87624 1.51117 1.87736 2.64993 3.33457 3.40675 3.44797 4.34986 4.49576 4.56325 4.86046 4.97503 5.12610 5.26466 5.34686 5.45228 5.52623 5.55832 5.64492 5.71355 5.78478 5.84123 5.99882 6.02945 6.08930 6.18825 6.28262 6.36824 6.39291 6.48457 6.64137 6.88975 7.08217 7.19064 7.31664 7.37010 7.51270 7.68150 7.86380 8.60934 9.06849 9.64123 11.14369 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.004485 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.687123 B = 6242.060095 C = 6789.650168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.682 5.682 15 C 0.086 3.914 16 H 0.042 0.958 17 C -0.138 4.138 18 C -0.052 4.052 19 C -0.173 4.173 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.216 4.216 23 S 0.084 5.916 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 1.396 22.166 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.025 4.025 16 H 0.060 0.940 17 C -0.196 4.196 18 C -0.092 4.092 19 C -0.290 4.290 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.352 4.352 23 S 0.347 5.653 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.687 0.046 22.771 23.248 hybrid contribution 0.830 0.466 -1.192 1.525 sum 5.518 0.512 21.579 22.279 Atomic orbital electron populations 1.21592 0.95275 1.00595 1.00621 1.20995 0.96312 0.98955 0.92938 0.92370 1.19611 0.95669 0.95874 0.93543 1.21137 1.35130 1.09547 0.89085 0.90832 1.25020 0.95670 0.96902 0.95960 1.69914 1.47337 1.39305 0.97974 0.86818 0.80681 0.84459 0.77560 1.20352 1.21509 1.19161 1.22196 0.96892 0.97801 0.89763 1.60665 1.63821 1.06025 1.01056 1.21507 0.96788 0.94002 0.90197 0.94036 1.21774 0.99416 0.97999 1.00413 1.20420 0.95639 0.94641 0.98461 1.24568 0.97346 1.00795 1.06300 1.20234 1.00388 0.94855 1.01535 1.20229 0.91656 1.01867 1.02131 1.25580 1.02868 0.99525 1.07194 1.84224 1.02347 1.22204 1.56523 0.94251 0.93701 0.92322 0.97031 0.97090 0.92870 0.96020 0.91591 0.83999 0.91863 0.92344 0.93011 0.90343 0.88998 0.83799 0.84134 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 5 C -0.51 -14.64 8.96 -34.44 -0.31 -14.95 16 6 H 0.07 2.26 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 9 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.15 16 13 C 0.06 1.05 4.87 -3.82 -0.02 1.03 16 14 N -0.68 -9.65 5.76 -106.73 -0.62 -10.27 16 15 C 0.09 1.01 2.64 -67.71 -0.18 0.83 16 16 H 0.04 0.54 7.80 -51.93 -0.40 0.13 16 17 C -0.14 -1.48 9.41 37.16 0.35 -1.13 16 18 C -0.05 -0.52 5.31 -27.88 -0.15 -0.66 16 19 C -0.17 -1.89 5.39 -36.00 -0.19 -2.08 16 20 C -0.14 -1.55 8.54 -41.21 -0.35 -1.90 16 21 C -0.13 -1.37 10.18 -41.21 -0.42 -1.79 16 22 C -0.22 -2.22 11.23 29.04 0.33 -1.89 16 23 S 0.08 0.88 23.33 -107.50 -2.51 -1.63 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 26 H 0.06 1.26 6.95 -51.92 -0.36 0.90 16 27 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 30 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 31 H 0.07 1.11 7.44 -51.93 -0.39 0.73 16 32 H 0.34 4.77 5.84 -39.29 -0.23 4.54 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.14 1.48 7.69 -52.49 -0.40 1.08 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -30.60 332.49 -9.73 -40.34 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.69 Total: 1.34 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -1.03 Total: -24.79 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.16 Total: -37.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.60 -9.73 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.068 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds