Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47744 * 2 1 4 4 C 1.52997 * 109.47120 * 239.99470 * 2 1 3 5 5 C 1.50697 * 109.47056 * 65.00297 * 4 2 1 6 6 H 1.08003 * 120.00378 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00289 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00508 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99665 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46796 * 90.00442 * 9 7 5 11 11 H 1.48501 * 109.46730 * 209.99891 * 9 7 5 12 12 H 1.48493 * 109.47011 * 330.00101 * 9 7 5 13 13 C 1.53008 * 109.46880 * 119.99941 * 2 1 3 14 14 N 1.46894 * 109.46990 * 294.99647 * 13 2 1 15 15 C 1.46900 * 111.00164 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.47101 * 35.00355 * 15 14 13 17 17 C 1.52999 * 109.47028 * 275.00056 * 15 14 13 18 18 C 1.53005 * 109.47049 * 155.00263 * 15 14 13 19 19 C 1.50702 * 109.46948 * 294.99925 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.08999 * 109.47744 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47099 * 300.00550 * 1 2 3 26 26 H 1.09009 * 109.47053 * 60.00144 * 1 2 3 27 27 H 1.08998 * 109.47374 * 185.00617 * 4 2 1 28 28 H 1.09006 * 109.47107 * 305.00548 * 4 2 1 29 29 H 0.97005 * 120.00234 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46959 * 174.99853 * 13 2 1 31 31 H 1.08995 * 109.46928 * 54.99243 * 13 2 1 32 32 H 1.00903 * 111.00002 * 303.96010 * 14 13 2 33 33 H 1.09003 * 109.47331 * 299.99623 * 17 15 14 34 34 H 1.09001 * 109.46947 * 59.99614 * 17 15 14 35 35 H 1.08999 * 109.47021 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.46850 * 175.00166 * 18 15 14 37 37 H 1.08995 * 109.47365 * 55.00174 * 18 15 14 38 38 H 1.08002 * 122.53744 * 0.02562 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3758 7 6 1.9923 -0.4025 -3.7283 8 7 1.6449 0.2769 -4.7994 9 14 2.9627 -1.9892 -3.9026 10 1 2.0234 -3.1335 -4.0188 11 1 3.8107 -1.9195 -5.1197 12 1 3.8251 -2.1758 -2.7083 13 6 2.0399 -0.7213 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1257 -0.6264 3.6672 16 1 3.0894 -1.0974 3.4739 17 6 1.1139 -1.6916 4.0944 18 6 2.2786 0.4086 4.7836 19 6 3.3631 1.3881 4.4154 20 6 3.1772 2.5231 3.7399 21 6 4.3251 3.2640 3.5171 22 6 5.4439 2.7281 4.0072 23 16 5.0678 1.2090 4.8099 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 3.1263 -0.7997 -1.2055 28 1 1.6052 -1.7199 -1.2950 29 1 1.8916 -0.0465 -5.6800 30 1 3.1262 -0.7995 1.2057 31 1 1.6052 -1.7197 1.2953 32 1 1.9881 0.9874 2.3966 33 1 0.1501 -1.2206 4.2878 34 1 1.0049 -2.4289 3.2991 35 1 1.4661 -2.1845 5.0006 36 1 2.5446 -0.0957 5.7126 37 1 1.3372 0.9417 4.9163 38 1 2.2048 2.8400 3.3930 39 1 4.3160 4.2026 2.9829 40 1 6.4297 3.1617 3.9255 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602509731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -9.655736 kcal Electronic energy + Delta-G solvation = -18140.320102 eV Core-core repulsion = 15465.950589 eV Total energy + Delta-G solvation = -2674.369513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.61657 -38.20878 -36.53590 -34.45014 -32.33010 -30.71913 -29.16436 -27.28256 -26.55105 -24.31971 -23.65582 -21.53853 -20.71883 -20.11971 -18.91904 -17.98235 -16.99731 -16.44430 -16.38179 -15.83069 -15.66634 -15.13880 -14.62629 -14.25868 -14.08787 -13.90365 -13.55615 -13.45524 -13.30423 -13.16711 -12.90247 -12.67584 -12.65276 -12.43273 -12.31041 -12.10067 -11.85106 -11.71354 -11.63204 -11.43033 -11.16736 -11.01640 -10.74073 -9.56310 -9.43720 -9.24988 -8.26370 -6.28456 0.07021 0.72483 1.07924 1.34713 1.36234 1.48002 1.83382 2.37009 3.08739 3.25563 3.75826 3.96054 4.17056 4.24076 4.27028 4.34226 4.43018 4.47586 4.65045 4.73550 4.79444 4.82058 4.87481 4.94122 4.97262 5.01581 5.10392 5.16200 5.22958 5.38759 5.39335 5.42729 5.46691 5.55614 5.58820 5.70673 5.72903 6.16534 6.35093 6.52706 6.78785 7.35017 8.90384 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.004485 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.687123 B = 6242.060095 C = 6789.650168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 H 0.045 0.955 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.251 1.251 13 C 0.076 3.924 14 N -0.682 5.682 15 C 0.086 3.914 16 H 0.033 0.967 17 C -0.135 4.135 18 C -0.046 4.046 19 C -0.182 4.182 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.221 4.221 23 S 0.084 5.916 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.011 0.989 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.340 0.660 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -0.025 24.142 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 H 0.064 0.936 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.054 0.946 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.174 1.174 13 C -0.053 4.053 14 N -0.315 5.315 15 C -0.024 4.024 16 H 0.051 0.949 17 C -0.193 4.193 18 C -0.085 4.085 19 C -0.299 4.299 20 C -0.182 4.182 21 C -0.174 4.174 22 C -0.356 4.356 23 S 0.347 5.653 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.424 -1.373 24.777 25.401 hybrid contribution 0.569 1.013 -1.789 2.133 sum 5.993 -0.360 22.987 23.759 Atomic orbital electron populations 1.21481 0.94734 1.00747 1.00134 1.20871 0.96686 0.98186 0.93025 0.93612 1.19561 0.95610 0.95799 0.93451 1.21434 1.34268 1.08691 0.91165 0.94637 1.25966 0.96961 1.00855 0.95525 1.70067 1.49118 1.41557 0.98684 0.85722 0.79408 0.79767 0.78133 1.19149 1.21071 1.17424 1.21909 0.96324 0.97740 0.89323 1.60647 1.63882 1.05984 1.00980 1.21579 0.96644 0.94637 0.89578 0.94892 1.21757 0.99212 0.97354 1.00942 1.20405 0.95697 0.94077 0.98339 1.24749 0.97809 1.00999 1.06390 1.20407 1.00777 0.95222 1.01778 1.20457 0.91793 1.02545 1.02621 1.25890 1.03689 0.99385 1.06660 1.84185 1.02203 1.22387 1.56493 0.93707 0.91442 0.95451 0.97049 0.96508 0.92666 0.96576 0.91065 0.83950 0.91673 0.93526 0.90841 0.88525 0.88338 0.83507 0.83084 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -2.73 2.48 -10.79 -0.03 -2.76 16 3 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 5 C -0.52 -30.26 8.96 25.60 0.23 -30.03 16 6 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 7 C 0.00 0.18 5.47 84.66 0.46 0.65 16 8 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 9 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.59 16 13 C 0.08 2.46 4.87 86.31 0.42 2.88 16 14 N -0.68 -18.01 5.76 -491.58 -2.83 -20.84 16 15 C 0.09 1.82 2.64 44.92 0.12 1.94 16 16 H 0.03 0.78 7.80 -2.39 -0.02 0.76 16 17 C -0.13 -2.50 9.41 71.98 0.68 -1.82 16 18 C -0.05 -0.79 5.31 29.85 0.16 -0.63 16 19 C -0.18 -3.66 5.39 24.59 0.13 -3.53 16 20 C -0.15 -3.18 8.54 21.22 0.18 -3.00 16 21 C -0.14 -2.92 10.18 21.22 0.22 -2.70 16 22 C -0.22 -4.21 11.23 66.72 0.75 -3.46 16 23 S 0.08 1.63 23.33 -56.49 -1.32 0.31 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.25 7.75 -2.39 -0.02 2.23 16 26 H 0.03 1.19 6.95 -2.38 -0.02 1.17 16 27 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 28 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 29 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 30 H 0.02 0.54 8.05 -2.39 -0.02 0.52 16 31 H 0.07 2.24 7.44 -2.39 -0.02 2.22 16 32 H 0.34 9.04 5.84 -89.69 -0.52 8.52 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.15 2.89 7.69 -2.91 -0.02 2.87 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.98 332.49 2.52 -63.47 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.42 Total: 16.77 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 4.06 Total: -46.40 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.53 Total: -81.34 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -65.98 2.52 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.812 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds