Wall clock time and date at job start Mon Mar 30 2020 00:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99073 * 9 7 5 12 12 H 1.48497 * 109.47175 * 239.99531 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.46606 * 325.00308 * 15 14 13 17 17 C 1.52992 * 109.46880 * 85.00439 * 15 14 13 18 18 C 1.53003 * 109.47026 * 205.00526 * 15 14 13 19 19 C 1.50694 * 109.47351 * 65.00189 * 18 15 14 20 20 C 1.38423 * 122.53638 * 269.73467 * 19 18 15 21 21 C 1.33395 * 114.91963 * 179.76228 * 20 19 18 22 22 S 1.75882 * 109.59134 * 0.47370 * 21 20 19 23 23 C 1.33386 * 122.54168 * 90.02033 * 19 18 15 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 31 31 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 32 32 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 33 33 H 1.09002 * 109.47360 * 60.00031 * 17 15 14 34 34 H 1.09002 * 109.47252 * 180.02562 * 17 15 14 35 35 H 1.09005 * 109.46884 * 299.99993 * 17 15 14 36 36 H 1.08997 * 109.46594 * 185.00350 * 18 15 14 37 37 H 1.08994 * 109.46981 * 304.99598 * 18 15 14 38 38 H 1.07997 * 122.54266 * 359.97438 * 20 19 18 39 39 H 1.08004 * 125.20422 * 180.21065 * 21 20 19 40 40 H 1.07999 * 125.20502 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 2.0807 -1.7079 3.5332 17 6 3.5684 -0.2067 3.9498 18 6 1.2359 -0.2226 4.8450 19 6 -0.1604 -0.7441 4.6230 20 6 -1.1333 -0.0109 3.9658 21 6 -2.3140 -0.6206 3.8495 22 16 -2.2373 -2.2045 4.6104 23 6 -0.5540 -1.9451 5.0496 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7198 -1.2952 29 1 2.9228 -1.8423 -4.7318 30 1 1.6054 -1.7199 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 0.6528 0.1793 2.4753 33 1 3.6125 0.8742 4.0838 34 1 3.9198 -0.7001 4.8560 35 1 4.2017 -0.4949 3.1107 36 1 1.6390 -0.6439 5.7659 37 1 1.2096 0.8642 4.9238 38 1 -0.9494 0.9785 3.5738 39 1 -3.1852 -0.2036 3.3662 40 1 0.0659 -2.6501 5.5834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602517497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:19 Heat of formation + Delta-G solvation = 4.994174 kcal Electronic energy + Delta-G solvation = -18213.511188 eV Core-core repulsion = 15539.776943 eV Total energy + Delta-G solvation = -2673.734245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.08083 -36.82703 -34.73869 -32.40226 -30.65287 -29.33762 -27.23138 -26.74359 -25.10405 -23.28434 -22.38272 -20.30294 -19.04713 -18.71573 -17.68832 -16.39079 -15.76525 -15.48373 -14.86662 -14.44346 -13.88455 -13.58114 -13.08076 -12.98216 -12.90315 -12.64904 -12.51695 -12.31932 -11.93736 -11.72386 -11.51737 -11.38717 -11.34215 -10.90846 -10.82743 -10.74414 -10.60207 -10.29653 -10.10588 -9.66886 -9.11098 -8.91488 -8.89166 -8.45524 -8.30250 -8.04619 -5.94747 -3.95650 0.90944 1.57443 1.89216 2.59601 3.33855 3.41345 3.45484 4.43824 4.53603 4.77556 4.86289 5.03642 5.20857 5.28515 5.41122 5.50054 5.51159 5.65236 5.78636 5.83506 5.89483 5.91520 5.97070 6.08769 6.11498 6.30269 6.34095 6.38641 6.41276 6.54497 6.63117 7.01859 7.14845 7.22544 7.48021 7.73586 7.78779 7.91045 8.06041 8.50099 9.11014 9.67628 11.16890 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004175 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.186299 B = 6704.567720 C = 7459.879732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.687 5.687 15 C 0.086 3.914 16 H 0.041 0.959 17 C -0.139 4.139 18 C -0.064 4.064 19 C -0.100 4.100 20 C -0.133 4.133 21 C -0.205 4.205 22 S 0.084 5.916 23 C -0.214 4.214 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.258 0.742 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 0.448 20.113 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.321 5.321 15 C -0.024 4.024 16 H 0.059 0.941 17 C -0.197 4.197 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.163 4.163 21 C -0.340 4.340 22 S 0.348 5.652 23 C -0.349 4.349 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.918 -0.439 20.158 21.316 hybrid contribution 0.118 0.707 -1.186 1.386 sum -6.799 0.269 18.971 20.155 Atomic orbital electron populations 1.21723 0.96783 1.00356 1.00067 1.21211 0.94783 1.00034 0.94227 0.91712 1.19111 0.96104 0.95353 0.90409 1.21283 1.34429 1.08218 0.90983 0.92528 1.25020 0.95379 0.95088 0.99079 1.69979 1.39233 1.21291 1.23212 0.86585 0.78249 0.80136 0.83333 1.19750 1.21087 1.21150 1.22157 1.00220 0.94322 0.89689 1.60748 1.19959 1.50246 1.01169 1.21488 0.94699 0.96409 0.89810 0.94136 1.21787 0.95283 1.01892 1.00744 1.20587 0.89649 1.01764 0.98453 1.19013 0.97442 0.94319 1.00480 1.20189 0.92331 1.01987 1.01823 1.25626 1.02601 0.98100 1.07692 1.84242 1.08983 1.17438 1.54564 1.25443 0.98582 1.01331 1.09555 0.91932 0.95141 0.94138 0.96689 0.96819 0.93193 0.96096 0.91567 0.83895 0.92018 0.93085 0.92364 0.90555 0.89981 0.83810 0.81774 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.76 2.55 -90.62 -0.23 -1.99 16 3 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.18 4.94 -3.82 -0.02 1.16 16 14 N -0.69 -10.45 6.31 -106.72 -0.67 -11.12 16 15 C 0.09 1.09 2.64 -67.71 -0.18 0.91 16 16 H 0.04 0.55 7.80 -51.93 -0.40 0.15 16 17 C -0.14 -1.62 9.41 37.15 0.35 -1.27 16 18 C -0.06 -0.67 5.08 -27.88 -0.14 -0.81 16 19 C -0.10 -1.11 4.70 -106.25 -0.50 -1.61 16 20 C -0.13 -1.48 8.36 -41.21 -0.34 -1.83 16 21 C -0.20 -2.16 11.23 29.04 0.33 -1.83 16 22 S 0.08 0.86 23.34 -107.50 -2.51 -1.65 16 23 C -0.21 -2.26 10.98 29.04 0.32 -1.94 16 24 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 25 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.07 1.23 7.44 -51.93 -0.39 0.85 16 32 H 0.34 4.99 3.97 -39.29 -0.16 4.84 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 36 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 38 H 0.14 1.51 7.69 -52.49 -0.40 1.11 16 39 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -30.26 333.38 -9.64 -39.90 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.59 Total: 1.66 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -0.60 Total: -24.13 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.06 Total: -37.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.26 -9.64 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.893 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds