Wall clock time and date at job start Mon Mar 30 2020 00:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 C 1.38429 * 122.53955 * 269.74370 * 5 4 2 7 7 C 1.33383 * 114.92050 * 179.75386 * 6 5 4 8 8 S 1.75889 * 109.59446 * 0.47527 * 7 6 5 9 9 C 1.33391 * 122.53876 * 90.01782 * 5 4 2 10 10 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 11 11 C 1.46903 * 110.99908 * 274.99684 * 10 2 1 12 12 C 1.52996 * 109.47400 * 179.97438 * 11 10 2 13 13 H 1.08998 * 109.47117 * 305.00378 * 12 11 10 14 14 C 1.53004 * 109.47186 * 64.99811 * 12 11 10 15 15 C 1.52997 * 109.47296 * 184.99658 * 12 11 10 16 16 C 1.50705 * 109.47105 * 174.99846 * 15 12 11 17 17 H 1.07994 * 119.99908 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99717 * 180.02562 * 16 15 12 19 19 N 1.31505 * 120.00603 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99717 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47164 * 60.00133 * 20 18 16 22 22 H 1.48500 * 109.47158 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47220 * 300.00225 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 28 28 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 29 29 H 1.07997 * 122.53877 * 359.97438 * 6 5 4 30 30 H 1.08001 * 125.20322 * 180.20514 * 7 6 5 31 31 H 1.07996 * 125.20241 * 0.03517 * 9 5 4 32 32 H 1.00894 * 111.00396 * 38.94794 * 10 2 1 33 33 H 1.09003 * 109.46856 * 300.00136 * 11 10 2 34 34 H 1.09001 * 109.47072 * 60.00127 * 11 10 2 35 35 H 1.08995 * 109.47081 * 300.00389 * 14 12 11 36 36 H 1.09001 * 109.47090 * 60.00064 * 14 12 11 37 37 H 1.08996 * 109.47580 * 180.02562 * 14 12 11 38 38 H 1.08996 * 109.47913 * 295.00131 * 15 12 11 39 39 H 1.09002 * 109.46899 * 55.00689 * 15 12 11 40 40 H 0.97002 * 120.00733 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 6 4.1881 0.4245 -1.9593 7 6 5.5202 0.3708 -1.9175 8 16 6.0253 -1.0633 -1.0332 9 6 4.3493 -1.5185 -0.7549 10 7 2.0196 -0.6925 1.1994 11 6 2.0825 0.2226 2.3469 12 6 2.5950 -0.5332 3.5744 13 1 1.9691 -1.4081 3.7500 14 6 4.0385 -0.9792 3.3329 15 6 2.5428 0.3850 4.7971 16 6 2.9306 -0.3942 6.0274 17 1 3.1888 -1.4396 5.9454 18 6 2.9556 0.2276 7.2578 19 7 2.6407 1.5005 7.3579 20 14 3.4369 -0.7381 8.7827 21 1 4.8152 -1.2663 8.6196 22 1 3.3850 0.1527 9.9697 23 1 2.4927 -1.8686 8.9712 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.6541 1.2206 -2.4567 30 1 6.1867 1.0947 -2.3626 31 1 4.0237 -2.3956 -0.2154 32 1 1.4495 -1.4979 1.4100 33 1 2.7589 1.0461 2.1181 34 1 1.0871 0.6163 2.5525 35 1 4.0757 -1.6332 2.4618 36 1 4.6646 -0.1043 3.1573 37 1 4.4036 -1.5180 4.2072 38 1 3.2365 1.2143 4.6588 39 1 1.5314 0.7734 4.9169 40 1 2.6579 1.9379 8.2235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602517498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:22 Heat of formation + Delta-G solvation = 5.103447 kcal Electronic energy + Delta-G solvation = -18164.462780 eV Core-core repulsion = 15490.733273 eV Total energy + Delta-G solvation = -2673.729507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.71436 -36.92251 -34.76129 -32.34983 -30.53049 -29.30491 -26.90210 -26.69125 -25.01470 -23.07247 -22.27903 -20.86268 -19.01849 -18.52912 -17.39881 -16.33350 -15.53939 -14.94266 -14.64262 -14.39030 -14.29798 -13.56134 -13.14253 -12.85799 -12.75887 -12.56312 -12.45586 -12.15344 -11.99544 -11.62323 -11.42974 -11.32474 -11.23533 -10.83139 -10.81688 -10.72900 -10.54659 -10.25971 -10.19246 -9.65318 -9.09729 -8.92394 -8.60924 -8.29799 -8.23748 -7.96147 -5.94658 -3.95689 1.20088 1.82759 2.15724 2.86449 3.36155 3.40400 3.42998 4.42850 4.53421 4.90714 5.02108 5.14467 5.32959 5.38181 5.41079 5.46333 5.59558 5.72599 5.74061 5.79873 5.88938 5.91973 6.06817 6.14480 6.18732 6.25213 6.49357 6.57011 6.63960 6.66856 6.74878 7.08154 7.23805 7.25753 7.46316 7.71508 7.76701 7.90057 8.05827 8.50046 9.10567 9.67482 11.16882 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.004264 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.072062 B = 6564.556738 C = 7386.104156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.075 0.925 4 C -0.046 4.046 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.221 4.221 8 S 0.073 5.927 9 C -0.173 4.173 10 N -0.677 5.677 11 C 0.067 3.933 12 C -0.081 4.081 13 H 0.051 0.949 14 C -0.119 4.119 15 C 0.028 3.972 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.335 0.665 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -3.859 -20.303 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.093 0.907 4 C -0.087 4.087 5 C -0.105 4.105 6 C -0.161 4.161 7 C -0.356 4.356 8 S 0.336 5.664 9 C -0.308 4.308 10 N -0.307 5.307 11 C -0.062 4.062 12 C -0.100 4.100 13 H 0.070 0.930 14 C -0.177 4.177 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.617 -4.254 -19.944 20.560 hybrid contribution -2.032 0.433 0.900 2.265 sum 0.584 -3.821 -19.044 19.432 Atomic orbital electron populations 1.22511 0.97488 1.01977 1.02127 1.21508 0.91820 0.98196 0.90871 0.90657 1.20331 0.90048 1.01198 0.97112 1.18682 0.96665 0.94945 1.00221 1.20069 0.93532 0.99992 1.02458 1.25454 0.98976 1.03090 1.08114 1.84271 1.08761 1.20115 1.53227 1.25364 0.94080 1.05155 1.06219 1.60605 1.56406 1.09800 1.03866 1.22127 0.98648 0.95216 0.90178 1.21178 0.96207 0.98549 0.94072 0.93014 1.21553 0.96307 1.00057 0.99754 1.19108 0.96795 0.94344 0.90721 1.21203 1.45275 0.96479 0.92080 0.92673 1.25011 0.95623 0.94861 0.99000 1.69951 1.49224 1.10050 1.24518 0.86705 0.79109 0.79841 0.82623 1.20265 1.21382 1.20342 0.92385 0.92466 0.92536 0.91210 0.91319 0.84932 0.82508 0.81993 0.84764 0.91840 0.95966 0.94031 0.94294 0.93015 0.96660 0.97052 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.16 37.16 0.34 -1.54 16 2 C 0.09 1.01 2.58 -67.72 -0.17 0.83 16 3 H 0.08 0.97 7.80 -51.93 -0.40 0.57 16 4 C -0.05 -0.47 5.15 -27.89 -0.14 -0.62 16 5 C -0.09 -1.10 4.86 -106.25 -0.52 -1.61 16 6 C -0.13 -1.45 9.98 -41.21 -0.41 -1.87 16 7 C -0.22 -2.45 11.23 29.04 0.33 -2.13 16 8 S 0.07 0.86 23.34 -107.50 -2.51 -1.65 16 9 C -0.17 -2.12 10.68 29.04 0.31 -1.81 16 10 N -0.68 -9.32 5.17 -106.73 -0.55 -9.87 16 11 C 0.07 1.15 4.87 -3.82 -0.02 1.14 16 12 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 13 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 15 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 16 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.33 4.40 8.47 -39.29 -0.33 4.06 16 33 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 35 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -29.89 339.38 -9.77 -39.66 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.85 Total: 0.60 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -0.69 Total: -24.19 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.18 Total: -36.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.89 -9.77 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.759 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds