Wall clock time and date at job start Mon Mar 30 2020 00:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 C 1.38429 * 122.53955 * 269.74370 * 5 4 2 7 7 C 1.33383 * 114.92050 * 179.75386 * 6 5 4 8 8 S 1.75889 * 109.59446 * 0.47527 * 7 6 5 9 9 C 1.33391 * 122.53876 * 90.01782 * 5 4 2 10 10 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 11 11 C 1.46903 * 110.99908 * 274.99684 * 10 2 1 12 12 C 1.52996 * 109.47400 * 179.97438 * 11 10 2 13 13 H 1.08998 * 109.47117 * 305.00378 * 12 11 10 14 14 C 1.53004 * 109.47186 * 64.99811 * 12 11 10 15 15 C 1.52997 * 109.47296 * 184.99658 * 12 11 10 16 16 C 1.50705 * 109.47105 * 174.99846 * 15 12 11 17 17 H 1.07994 * 119.99908 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99717 * 180.02562 * 16 15 12 19 19 N 1.31505 * 120.00603 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99717 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47164 * 60.00133 * 20 18 16 22 22 H 1.48500 * 109.47158 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47220 * 300.00225 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 28 28 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 29 29 H 1.07997 * 122.53877 * 359.97438 * 6 5 4 30 30 H 1.08001 * 125.20322 * 180.20514 * 7 6 5 31 31 H 1.07996 * 125.20241 * 0.03517 * 9 5 4 32 32 H 1.00894 * 111.00396 * 38.94794 * 10 2 1 33 33 H 1.09003 * 109.46856 * 300.00136 * 11 10 2 34 34 H 1.09001 * 109.47072 * 60.00127 * 11 10 2 35 35 H 1.08995 * 109.47081 * 300.00389 * 14 12 11 36 36 H 1.09001 * 109.47090 * 60.00064 * 14 12 11 37 37 H 1.08996 * 109.47580 * 180.02562 * 14 12 11 38 38 H 1.08996 * 109.47913 * 295.00131 * 15 12 11 39 39 H 1.09002 * 109.46899 * 55.00689 * 15 12 11 40 40 H 0.97002 * 120.00733 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 6 4.1881 0.4245 -1.9593 7 6 5.5202 0.3708 -1.9175 8 16 6.0253 -1.0633 -1.0332 9 6 4.3493 -1.5185 -0.7549 10 7 2.0196 -0.6925 1.1994 11 6 2.0825 0.2226 2.3469 12 6 2.5950 -0.5332 3.5744 13 1 1.9691 -1.4081 3.7500 14 6 4.0385 -0.9792 3.3329 15 6 2.5428 0.3850 4.7971 16 6 2.9306 -0.3942 6.0274 17 1 3.1888 -1.4396 5.9454 18 6 2.9556 0.2276 7.2578 19 7 2.6407 1.5005 7.3579 20 14 3.4369 -0.7381 8.7827 21 1 4.8152 -1.2663 8.6196 22 1 3.3850 0.1527 9.9697 23 1 2.4927 -1.8686 8.9712 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.6541 1.2206 -2.4567 30 1 6.1867 1.0947 -2.3626 31 1 4.0237 -2.3956 -0.2154 32 1 1.4495 -1.4979 1.4100 33 1 2.7589 1.0461 2.1181 34 1 1.0871 0.6163 2.5525 35 1 4.0757 -1.6332 2.4618 36 1 4.6646 -0.1043 3.1573 37 1 4.4036 -1.5180 4.2072 38 1 3.2365 1.2143 4.6588 39 1 1.5314 0.7734 4.9169 40 1 2.6579 1.9379 8.2235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602517498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:21 Heat of formation + Delta-G solvation = -11.093066 kcal Electronic energy + Delta-G solvation = -18165.165113 eV Core-core repulsion = 15490.733273 eV Total energy + Delta-G solvation = -2674.431840 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66828 -38.17852 -36.27991 -34.32590 -31.74100 -30.34670 -28.65194 -27.74194 -26.60135 -24.48713 -23.64000 -21.87801 -20.63919 -19.44242 -18.48694 -18.28594 -16.67649 -16.46318 -15.98727 -15.84791 -15.53387 -14.80491 -14.34681 -14.28791 -13.99884 -13.65925 -13.53971 -13.49592 -13.20559 -13.04295 -12.86695 -12.74361 -12.55747 -12.39253 -12.27320 -12.17210 -11.91841 -11.73054 -11.49283 -11.41720 -11.07865 -10.85779 -10.52766 -9.49458 -9.23876 -9.03204 -8.16945 -6.26260 0.32199 0.95462 1.28115 1.39874 1.42766 1.50381 1.99381 2.42252 3.16364 3.34325 4.01214 4.15799 4.22388 4.25542 4.40078 4.46936 4.53422 4.56476 4.69438 4.77319 4.84981 4.91131 4.92423 5.02796 5.04163 5.08012 5.21024 5.29409 5.31417 5.35229 5.48380 5.51240 5.57288 5.73525 5.80081 5.82756 5.89743 6.19901 6.33938 6.65093 6.89712 7.42048 8.95010 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.004264 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.072062 B = 6564.556738 C = 7386.104156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.062 0.938 4 C -0.040 4.040 5 C -0.098 4.098 6 C -0.140 4.140 7 C -0.223 4.223 8 S 0.053 5.947 9 C -0.189 4.189 10 N -0.672 5.672 11 C 0.084 3.916 12 C -0.072 4.072 13 H 0.055 0.945 14 C -0.107 4.107 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.061 0.939 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.267 1.267 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.342 0.658 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.034 0.966 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -5.002 -21.384 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.080 4.080 5 C -0.110 4.110 6 C -0.171 4.171 7 C -0.358 4.358 8 S 0.316 5.684 9 C -0.325 4.325 10 N -0.303 5.303 11 C -0.045 4.045 12 C -0.090 4.090 13 H 0.073 0.927 14 C -0.164 4.164 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.191 1.191 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.169 0.831 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.346 -5.414 -21.048 21.859 hybrid contribution -1.956 0.832 1.180 2.431 sum 0.390 -4.582 -19.868 20.393 Atomic orbital electron populations 1.22438 0.96166 1.02715 1.02187 1.21530 0.92819 0.97472 0.90310 0.91986 1.20323 0.89057 1.01725 0.96892 1.18947 0.97508 0.94778 0.99764 1.20352 0.93756 1.00407 1.02538 1.25763 0.99456 1.02902 1.07684 1.84312 1.09186 1.21059 1.53852 1.25485 0.94214 1.05705 1.07053 1.60532 1.57221 1.09391 1.03146 1.21752 0.97660 0.94906 0.90210 1.20986 0.97157 0.97631 0.93270 0.92705 1.21424 0.95202 0.99759 1.00047 1.19002 0.94165 0.94279 0.92991 1.21611 1.45028 0.96934 0.93124 0.92111 1.25946 0.95499 0.95849 1.02602 1.70094 1.50343 1.11841 1.25428 0.85575 0.79189 0.78494 0.78254 1.19311 1.21003 1.19139 0.94141 0.90604 0.91450 0.90351 0.89176 0.83081 0.80618 0.81900 0.83961 0.93166 0.96635 0.91414 0.95392 0.94657 0.99641 0.99697 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 9.16 71.98 0.66 -2.57 16 2 C 0.09 1.89 2.58 44.92 0.12 2.01 16 3 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 4 C -0.04 -0.70 5.15 29.85 0.15 -0.54 16 5 C -0.10 -2.11 4.86 -20.92 -0.10 -2.21 16 6 C -0.14 -2.86 9.98 21.22 0.21 -2.65 16 7 C -0.22 -4.59 11.23 66.72 0.75 -3.84 16 8 S 0.05 1.20 23.34 -56.49 -1.32 -0.12 16 9 C -0.19 -4.40 10.68 66.72 0.71 -3.68 16 10 N -0.67 -17.53 5.17 -491.57 -2.54 -20.07 16 11 C 0.08 2.90 4.87 86.30 0.42 3.32 16 12 C -0.07 -2.95 2.48 -10.79 -0.03 -2.97 16 13 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.11 -4.19 8.89 71.98 0.64 -3.55 16 15 C 0.03 1.78 4.45 29.85 0.13 1.91 16 16 C -0.53 -30.34 8.41 25.60 0.22 -30.12 16 17 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 19 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 20 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H 0.04 0.89 7.45 -2.39 -0.02 0.87 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 27 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 28 H 0.09 1.24 8.13 -2.38 -0.02 1.23 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.34 8.28 8.47 -89.70 -0.76 7.52 16 33 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 34 H 0.02 0.55 7.44 -2.39 -0.02 0.53 16 35 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.03 1.47 6.95 -2.39 -0.02 1.45 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.69 339.38 3.03 -61.66 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.24 Total: 13.87 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.34 Total: -44.55 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.26 Total: -77.85 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.32 Total: -0.12 kcal Total: -64.69 3.03 -61.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds