Wall clock time and date at job start Mon Mar 30 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 C 1.53003 * 109.47297 * 119.99650 * 2 1 3 5 5 N 1.46501 * 109.46758 * 65.97585 * 4 2 1 6 6 C 1.46508 * 119.99942 * 82.53937 * 5 4 2 7 7 C 1.50707 * 109.46914 * 90.00013 * 6 5 4 8 8 H 1.07999 * 119.99471 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00176 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99875 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47056 * 89.99679 * 11 9 7 13 13 H 1.48499 * 109.46966 * 209.99741 * 11 9 7 14 14 H 1.48501 * 109.46799 * 329.99574 * 11 9 7 15 15 C 1.34775 * 120.00413 * 262.26615 * 5 4 2 16 16 O 1.21285 * 120.00020 * 184.53320 * 15 5 4 17 17 C 1.50701 * 119.99866 * 4.53820 * 15 5 4 18 18 N 1.46495 * 109.47256 * 186.71832 * 17 15 5 19 19 C 1.34600 * 126.44112 * 125.00040 * 18 17 15 20 20 N 1.31067 * 106.67899 * 180.02562 * 19 18 17 21 21 N 1.28840 * 107.99384 * 359.97438 * 20 19 18 22 22 N 1.28741 * 109.39649 * 359.74086 * 21 20 19 23 23 H 1.09008 * 109.46820 * 56.21337 * 1 2 3 24 24 H 1.09001 * 109.46988 * 176.21181 * 1 2 3 25 25 H 1.08998 * 109.47574 * 296.21368 * 1 2 3 26 26 H 1.09002 * 109.47518 * 239.99780 * 2 1 3 27 27 H 1.08997 * 109.47325 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47322 * 300.00182 * 3 2 1 29 29 H 1.09002 * 109.46967 * 59.99443 * 3 2 1 30 30 H 1.08994 * 109.47022 * 305.98438 * 4 2 1 31 31 H 1.08996 * 109.47586 * 185.97555 * 4 2 1 32 32 H 1.08993 * 109.47233 * 210.00123 * 6 5 4 33 33 H 1.09004 * 109.46813 * 330.00393 * 6 5 4 34 34 H 0.96998 * 119.99665 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47020 * 306.71538 * 17 15 5 36 36 H 1.08998 * 109.46965 * 66.71280 * 17 15 5 37 37 H 1.07997 * 126.65718 * 359.95614 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6726 -2.1377 1.1796 6 6 2.4994 -3.0719 0.4115 7 6 3.5648 -3.6520 1.3057 8 1 3.6201 -3.3548 2.3425 9 6 4.4687 -4.5621 0.8002 10 7 4.4009 -4.9243 -0.4623 11 14 5.7888 -5.2817 1.9088 12 1 5.2769 -6.5203 2.5484 13 1 6.9926 -5.6029 1.1008 14 1 6.1462 -4.2938 2.9584 15 6 0.5771 -2.5824 1.8265 16 8 0.3184 -3.7673 1.8373 17 6 -0.3264 -1.6074 2.5365 18 7 -1.3449 -2.3442 3.2888 19 6 -1.6075 -2.2281 4.6038 20 7 -2.5846 -3.0610 4.8673 21 7 -2.9058 -3.6571 3.7712 22 7 -2.1626 -3.2221 2.8142 23 1 -0.3633 0.5715 -0.8542 24 1 -0.3633 -1.0254 -0.0679 25 1 -0.3634 0.4539 0.9219 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5919 -0.2729 2.1360 31 1 3.1247 -0.6295 1.3044 32 1 1.8740 -3.8756 0.0228 33 1 2.9694 -2.5436 -0.4181 34 1 5.0371 -5.5643 -0.8180 35 1 0.2630 -0.9992 3.2227 36 1 -0.8115 -0.9621 1.8042 37 1 -1.1089 -1.5762 5.3058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701317898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:57 Heat of formation + Delta-G solvation = 86.144840 kcal Electronic energy + Delta-G solvation = -20898.759323 eV Core-core repulsion = 17714.543571 eV Total energy + Delta-G solvation = -3184.215751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.00215 -39.68169 -36.68147 -35.32104 -33.83030 -32.49887 -32.25563 -29.69129 -27.51072 -27.12425 -25.75314 -23.73673 -23.66271 -22.41080 -20.52749 -18.99753 -17.67867 -17.22356 -16.65893 -16.27176 -15.95993 -15.37472 -15.21111 -14.68818 -14.20923 -13.76170 -13.55165 -13.15243 -12.84000 -12.49902 -12.33343 -12.14859 -11.98223 -11.84866 -11.44064 -11.15834 -11.09584 -11.01185 -10.93110 -10.88188 -10.68544 -10.63654 -10.27879 -10.20812 -9.76534 -9.24003 -8.53716 -7.92582 -6.15235 -4.20681 1.39778 1.98903 2.41936 2.92978 3.24509 3.31447 3.31677 3.49451 4.20718 4.27733 4.34490 4.51757 4.72107 4.80849 4.88763 4.92806 5.12324 5.20160 5.33720 5.47439 5.53586 5.60542 5.73371 5.81746 5.83585 5.93723 6.07452 6.15164 6.21753 6.33536 6.81581 7.23726 7.30684 7.79115 8.05847 8.09328 8.61556 8.77053 8.83727 9.44816 10.92981 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.006748 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.590492 B = 4148.244770 C = 5546.781582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.586 5.586 6 C 0.249 3.751 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.492 3.508 16 O -0.506 6.506 17 C 0.076 3.924 18 N -0.293 5.293 19 C 0.151 3.849 20 N -0.312 5.312 21 N -0.088 5.088 22 N -0.055 5.055 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 16.078 4.049 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.131 3.869 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.275 3.725 16 O -0.380 6.380 17 C -0.049 4.049 18 N -0.095 5.095 19 C -0.147 4.147 20 N -0.159 5.159 21 N -0.082 5.082 22 N -0.042 5.042 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.434 14.308 3.571 16.089 hybrid contribution 1.759 0.411 0.708 1.941 sum -4.675 14.719 4.280 16.025 Atomic orbital electron populations 1.22089 0.95930 1.01959 1.01362 1.21587 0.95582 0.96365 1.00213 1.21768 1.01429 0.95356 1.01555 1.21690 1.02065 0.81195 0.96485 1.48207 1.24720 1.09030 1.49841 1.19348 0.89204 0.87794 0.90579 1.21357 1.13296 1.25496 0.96768 0.92490 1.24919 0.97825 0.96040 0.95150 1.69918 1.37063 1.32966 1.13114 0.86503 0.80909 0.79654 0.80389 1.20516 1.21028 1.19925 1.19814 0.82424 0.88871 0.81423 1.90839 1.71972 1.15968 1.59264 1.22754 0.89019 0.94572 0.98575 1.48245 1.25206 1.27697 1.08323 1.27649 0.98625 1.02623 0.85839 1.74918 1.12581 1.07847 1.20582 1.78636 1.18351 1.18783 0.92422 1.79045 1.00162 1.01984 1.22987 0.92207 0.92246 0.92907 0.89875 0.92236 0.92622 0.92834 0.91737 0.89325 0.93782 0.94467 0.92561 0.84928 0.84425 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 7.39 37.15 0.27 -1.24 16 2 C -0.12 -1.28 3.10 -90.62 -0.28 -1.56 16 3 C -0.14 -1.20 9.19 37.16 0.34 -0.86 16 4 C 0.11 1.39 4.88 -4.04 -0.02 1.37 16 5 N -0.59 -10.61 2.24 -175.05 -0.39 -11.01 16 6 C 0.25 5.99 5.14 -5.19 -0.03 5.97 16 7 C -0.53 -14.23 9.38 -34.44 -0.32 -14.55 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.49 9.01 6.74 -10.99 -0.07 8.93 16 16 O -0.51 -12.28 15.24 5.55 0.08 -12.19 16 17 C 0.08 0.90 5.41 -5.20 -0.03 0.88 16 18 N -0.29 -4.25 3.24 -63.74 -0.21 -4.46 16 19 C 0.15 1.85 12.79 -90.39 -1.16 0.70 16 20 N -0.31 -5.03 12.36 29.59 0.37 -4.67 16 21 N -0.09 -1.65 13.43 60.35 0.81 -0.84 16 22 N -0.06 -1.02 12.18 60.35 0.74 -0.29 16 23 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.71 6.47 -51.93 -0.34 0.38 16 25 H 0.05 0.38 6.71 -51.93 -0.35 0.03 16 26 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.57 6.00 -51.93 -0.31 0.26 16 31 H 0.09 1.21 8.12 -51.93 -0.42 0.79 16 32 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 33 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.13 0.96 6.83 -51.93 -0.35 0.61 16 36 H 0.14 1.32 4.27 -51.93 -0.22 1.10 16 37 H 0.23 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -35.89 310.78 -4.46 -40.35 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -4.86 Total: -4.18 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.39 Total: 1.28 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 2.05 Total: -46.23 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.89 -4.46 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701317898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.497 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds