Wall clock time and date at job start Mon Mar 30 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 C 1.53003 * 109.47297 * 119.99650 * 2 1 3 5 5 N 1.46501 * 109.46758 * 65.97585 * 4 2 1 6 6 C 1.46508 * 119.99942 * 82.53937 * 5 4 2 7 7 C 1.50707 * 109.46914 * 90.00013 * 6 5 4 8 8 H 1.07999 * 119.99471 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00176 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99875 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47056 * 89.99679 * 11 9 7 13 13 H 1.48499 * 109.46966 * 209.99741 * 11 9 7 14 14 H 1.48501 * 109.46799 * 329.99574 * 11 9 7 15 15 C 1.34775 * 120.00413 * 262.26615 * 5 4 2 16 16 O 1.21285 * 120.00020 * 184.53320 * 15 5 4 17 17 C 1.50701 * 119.99866 * 4.53820 * 15 5 4 18 18 N 1.46495 * 109.47256 * 186.71832 * 17 15 5 19 19 C 1.34600 * 126.44112 * 125.00040 * 18 17 15 20 20 N 1.31067 * 106.67899 * 180.02562 * 19 18 17 21 21 N 1.28840 * 107.99384 * 359.97438 * 20 19 18 22 22 N 1.28741 * 109.39649 * 359.74086 * 21 20 19 23 23 H 1.09008 * 109.46820 * 56.21337 * 1 2 3 24 24 H 1.09001 * 109.46988 * 176.21181 * 1 2 3 25 25 H 1.08998 * 109.47574 * 296.21368 * 1 2 3 26 26 H 1.09002 * 109.47518 * 239.99780 * 2 1 3 27 27 H 1.08997 * 109.47325 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47322 * 300.00182 * 3 2 1 29 29 H 1.09002 * 109.46967 * 59.99443 * 3 2 1 30 30 H 1.08994 * 109.47022 * 305.98438 * 4 2 1 31 31 H 1.08996 * 109.47586 * 185.97555 * 4 2 1 32 32 H 1.08993 * 109.47233 * 210.00123 * 6 5 4 33 33 H 1.09004 * 109.46813 * 330.00393 * 6 5 4 34 34 H 0.96998 * 119.99665 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47020 * 306.71538 * 17 15 5 36 36 H 1.08998 * 109.46965 * 66.71280 * 17 15 5 37 37 H 1.07997 * 126.65718 * 359.95614 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6726 -2.1377 1.1796 6 6 2.4994 -3.0719 0.4115 7 6 3.5648 -3.6520 1.3057 8 1 3.6201 -3.3548 2.3425 9 6 4.4687 -4.5621 0.8002 10 7 4.4009 -4.9243 -0.4623 11 14 5.7888 -5.2817 1.9088 12 1 5.2769 -6.5203 2.5484 13 1 6.9926 -5.6029 1.1008 14 1 6.1462 -4.2938 2.9584 15 6 0.5771 -2.5824 1.8265 16 8 0.3184 -3.7673 1.8373 17 6 -0.3264 -1.6074 2.5365 18 7 -1.3449 -2.3442 3.2888 19 6 -1.6075 -2.2281 4.6038 20 7 -2.5846 -3.0610 4.8673 21 7 -2.9058 -3.6571 3.7712 22 7 -2.1626 -3.2221 2.8142 23 1 -0.3633 0.5715 -0.8542 24 1 -0.3633 -1.0254 -0.0679 25 1 -0.3634 0.4539 0.9219 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5919 -0.2729 2.1360 31 1 3.1247 -0.6295 1.3044 32 1 1.8740 -3.8756 0.0228 33 1 2.9694 -2.5436 -0.4181 34 1 5.0371 -5.5643 -0.8180 35 1 0.2630 -0.9992 3.2227 36 1 -0.8115 -0.9621 1.8042 37 1 -1.1089 -1.5762 5.3058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701317898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:56 Heat of formation + Delta-G solvation = 60.177882 kcal Electronic energy + Delta-G solvation = -20899.885335 eV Core-core repulsion = 17714.543571 eV Total energy + Delta-G solvation = -3185.341763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.14530 -41.07267 -37.89518 -36.52661 -35.42350 -34.18762 -33.44054 -31.02200 -29.08898 -27.92191 -26.93606 -25.37489 -24.78202 -23.86612 -21.51111 -20.31076 -18.82110 -18.66075 -18.38172 -17.53251 -17.14130 -16.82346 -16.55462 -16.01044 -15.54468 -14.82078 -14.66768 -14.56815 -14.17651 -13.86961 -13.60506 -13.35487 -13.15330 -12.96636 -12.82421 -12.70095 -12.61309 -12.32708 -12.16963 -12.16694 -11.96547 -11.79091 -11.63478 -11.52046 -11.40923 -10.71432 -10.67128 -9.50279 -8.25436 -6.39511 0.30487 0.99761 1.27163 1.34160 1.37709 1.46209 1.58250 2.13571 2.37706 3.05360 3.20660 3.44724 3.51304 3.83875 3.92763 3.99289 4.05871 4.27697 4.39251 4.50668 4.71116 4.73984 4.83218 4.92993 4.98121 5.06147 5.10086 5.18862 5.23385 5.35524 5.41384 5.53001 5.56938 5.77843 6.01758 6.59012 6.71249 7.19773 7.34666 7.60138 8.81857 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.006748 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.590492 B = 4148.244770 C = 5546.781582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.102 3.898 5 N -0.587 5.587 6 C 0.266 3.734 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.963 3.037 12 H -0.287 1.287 13 H -0.276 1.276 14 H -0.256 1.256 15 C 0.483 3.517 16 O -0.580 6.580 17 C 0.088 3.912 18 N -0.298 5.298 19 C 0.181 3.819 20 N -0.343 5.343 21 N -0.120 5.120 22 N -0.097 5.097 23 H 0.068 0.932 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.077 0.923 32 H -0.010 1.010 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.198 0.802 36 H 0.166 0.834 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 19.672 6.640 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.194 4.194 4 C -0.020 4.020 5 N -0.317 5.317 6 C 0.145 3.855 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.788 3.212 12 H -0.214 1.214 13 H -0.201 1.201 14 H -0.180 1.180 15 C 0.269 3.731 16 O -0.459 6.459 17 C -0.035 4.035 18 N -0.100 5.100 19 C -0.117 4.117 20 N -0.191 5.191 21 N -0.114 5.114 22 N -0.085 5.085 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.183 0.817 37 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges -5.891 17.977 6.166 19.897 hybrid contribution 1.607 -0.643 -0.117 1.735 sum -4.284 17.334 6.048 18.852 Atomic orbital electron populations 1.22097 0.94651 1.00595 1.03917 1.21515 0.96622 0.97568 0.97694 1.21722 1.01038 0.93300 1.03353 1.22107 1.02145 0.78042 0.99681 1.48107 1.24263 1.10527 1.48822 1.18684 0.88434 0.87617 0.90774 1.21703 1.13625 1.25452 0.96977 0.92347 1.25836 1.00303 0.96586 0.96499 1.70047 1.38144 1.33769 1.14939 0.85482 0.78239 0.78625 0.78880 1.21357 1.20137 1.17960 1.20871 0.82421 0.89152 0.80612 1.90813 1.73646 1.19590 1.61829 1.23008 0.87919 0.92391 1.00163 1.48428 1.24966 1.27228 1.09352 1.28837 0.96512 1.00937 0.85382 1.74829 1.14697 1.09294 1.20276 1.78607 1.19460 1.20011 0.93339 1.79001 1.01577 1.03874 1.24019 0.91311 0.95307 0.88962 0.93804 0.92893 0.92049 0.89812 0.86179 0.90465 0.99142 0.95503 0.92505 0.78531 0.81665 0.68653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 7.39 71.98 0.53 -2.01 16 2 C -0.11 -2.26 3.10 -10.79 -0.03 -2.29 16 3 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 4 C 0.10 2.29 4.88 86.38 0.42 2.71 16 5 N -0.59 -21.13 2.24 -826.13 -1.85 -22.98 16 6 C 0.27 13.49 5.14 85.63 0.44 13.93 16 7 C -0.54 -29.60 9.38 25.60 0.24 -29.36 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 11 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 15 C 0.48 17.36 6.74 87.66 0.59 17.95 16 16 O -0.58 -29.22 15.24 -3.05 -0.05 -29.26 16 17 C 0.09 1.72 5.41 85.63 0.46 2.19 16 18 N -0.30 -7.79 3.24 -355.58 -1.15 -8.94 16 19 C 0.18 3.66 12.79 180.27 2.31 5.97 16 20 N -0.34 -10.50 12.36 -60.30 -0.75 -11.24 16 21 N -0.12 -4.52 13.43 37.01 0.50 -4.02 16 22 N -0.10 -3.60 12.18 37.02 0.45 -3.15 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.03 0.65 6.47 -2.39 -0.02 0.63 16 25 H 0.09 0.77 6.71 -2.39 -0.02 0.75 16 26 H 0.04 1.20 7.94 -2.39 -0.02 1.18 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 1.35 6.00 -2.39 -0.01 1.33 16 31 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 32 H -0.01 -0.58 7.49 -2.39 -0.02 -0.60 16 33 H 0.03 1.39 7.87 -2.38 -0.02 1.37 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.20 1.26 6.83 -2.39 -0.02 1.25 16 36 H 0.17 2.36 4.27 -2.39 -0.01 2.35 16 37 H 0.30 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -89.04 310.78 6.63 -82.41 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: 1.08 Total: -2.35 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.08 Total: 8.80 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -2.52 Total: -105.67 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.26 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -89.04 6.63 -82.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701317898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.589 kcal (2) G-P(sol) polarization free energy of solvation -89.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds