Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48503 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46949 * 300.00345 * 3 2 1 6 6 H 1.48498 * 109.46974 * 59.99839 * 3 2 1 7 7 C 1.37875 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47737 * 179.97438 * 11 10 9 13 13 C 1.48537 * 110.99862 * 74.59177 * 12 11 10 14 14 C 1.54319 * 104.67093 * 159.19635 * 13 12 11 15 15 H 1.09002 * 111.82469 * 214.58222 * 14 13 12 16 16 C 1.54169 * 109.64565 * 89.99189 * 14 13 12 17 17 C 1.54842 * 104.32443 * 223.31373 * 16 14 13 18 18 C 1.54846 * 102.73338 * 38.18461 * 17 16 14 19 19 C 1.54161 * 104.32439 * 321.81029 * 18 17 16 20 20 C 1.50697 * 111.79856 * 261.29968 * 19 18 17 21 21 O 1.20829 * 119.99934 * 119.22250 * 20 19 18 22 22 O 1.34229 * 119.99967 * 299.22997 * 20 19 18 23 23 C 1.48525 * 111.00346 * 190.00025 * 12 11 10 24 24 H 0.96994 * 119.99858 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47395 * 59.99838 * 9 7 2 26 26 H 1.09006 * 109.46780 * 299.99496 * 9 7 2 27 27 H 1.09004 * 109.47509 * 59.99485 * 10 9 7 28 28 H 1.08998 * 109.47144 * 299.99598 * 10 9 7 29 29 H 1.08997 * 109.47388 * 59.99181 * 11 10 9 30 30 H 1.09007 * 109.47295 * 299.99867 * 11 10 9 31 31 H 1.08998 * 110.39221 * 40.40166 * 13 12 11 32 32 H 1.08997 * 110.39685 * 277.99917 * 13 12 11 33 33 H 1.09001 * 110.46119 * 342.02809 * 16 14 13 34 34 H 1.09003 * 110.45867 * 104.60658 * 16 14 13 35 35 H 1.08995 * 110.76300 * 279.87192 * 17 16 14 36 36 H 1.08998 * 110.91506 * 156.56752 * 17 16 14 37 37 H 1.09003 * 110.46605 * 203.10286 * 18 17 16 38 38 H 1.09003 * 110.57365 * 80.57743 * 18 17 16 39 39 H 0.96699 * 116.99756 * 179.97438 * 22 20 19 40 40 H 1.09001 * 110.39814 * 82.00159 * 23 12 11 41 41 H 1.09003 * 110.39882 * 319.59729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4350 -6.1037 -0.0049 13 6 3.0619 -6.2700 1.3314 14 6 3.5836 -7.7222 1.3403 15 1 3.5081 -8.1739 2.3295 16 6 5.0285 -7.7572 0.8038 17 6 5.0562 -8.9824 -0.1426 18 6 3.6674 -8.9184 -0.8244 19 6 2.7121 -8.4659 0.2978 20 6 1.9755 -9.6299 0.9089 21 8 2.1092 -9.8800 2.0834 22 8 1.1710 -10.3890 0.1484 23 6 1.7428 -7.3954 -0.2462 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8721 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.8534 -5.0443 -0.8930 30 1 0.8540 -5.0454 0.8869 31 1 2.3216 -6.1274 2.1186 32 1 3.8874 -5.5689 1.4536 33 1 5.2523 -6.8442 0.2520 34 1 5.7357 -7.8919 1.6223 35 1 5.1659 -9.9065 0.4247 36 1 5.8533 -8.8866 -0.8799 37 1 3.3797 -9.9019 -1.1961 38 1 3.6725 -8.1916 -1.6367 39 1 0.7200 -11.1246 0.5850 40 1 1.5742 -7.5426 -1.3130 41 1 0.7980 -7.4274 0.2965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701455358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -108.743452 kcal Electronic energy + Delta-G solvation = -20814.116263 eV Core-core repulsion = 17692.697113 eV Total energy + Delta-G solvation = -3121.419150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27554 -39.17301 -36.37782 -35.93238 -33.60277 -31.69084 -30.96178 -29.27393 -26.29706 -25.71760 -23.75081 -22.80527 -21.18385 -21.03364 -20.09993 -19.02682 -18.03843 -17.17797 -16.18049 -15.95704 -15.21366 -15.12709 -14.62788 -14.44764 -14.15163 -13.97812 -13.82622 -13.25296 -12.75004 -12.25418 -11.94780 -11.87957 -11.74441 -11.41843 -11.40938 -11.18245 -11.15129 -11.00813 -10.89285 -10.79248 -10.60725 -10.55344 -10.44443 -10.39313 -9.62297 -9.31547 -9.03226 -8.33819 -8.31187 -5.97964 -3.99826 1.95994 2.75177 3.32622 3.40021 3.44535 4.01881 4.20570 4.28776 4.48067 4.51672 4.99360 5.06173 5.09868 5.14145 5.21735 5.38076 5.41865 5.48618 5.55335 5.61974 5.68259 5.72241 5.84372 5.88535 5.95824 5.99156 6.04573 6.11637 6.21880 6.30275 6.33001 6.65267 6.74499 6.98228 7.19493 7.30122 7.66039 7.70721 7.85187 8.02660 8.46035 9.07666 9.64238 11.13600 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.003653 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.423218 B = 7663.224679 C = 8056.920991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.044 3.956 12 N -0.502 5.502 13 C 0.037 3.963 14 C -0.085 4.085 15 H 0.099 0.901 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.102 4.102 19 C -0.061 4.061 20 C 0.497 3.503 21 O -0.513 6.513 22 O -0.512 6.512 23 C 0.050 3.950 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.408 0.592 40 H 0.094 0.906 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -21.408 -0.356 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.138 4.138 11 C -0.083 4.083 12 N -0.226 5.226 13 C -0.091 4.091 14 C -0.103 4.103 15 H 0.117 0.883 16 C -0.150 4.150 17 C -0.163 4.163 18 C -0.139 4.139 19 C -0.063 4.063 20 C 0.339 3.661 21 O -0.401 6.401 22 O -0.323 6.323 23 C -0.078 4.078 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.267 0.733 40 H 0.112 0.888 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.593 -20.890 -0.648 21.915 hybrid contribution -0.748 0.285 1.016 1.294 sum 5.844 -20.605 0.368 21.421 Atomic orbital electron populations 1.69977 1.06068 1.26423 1.51188 1.25030 0.94835 0.99260 0.95411 0.86549 0.80165 0.83838 0.77537 1.19703 1.21026 1.21079 1.21287 0.93091 0.91007 1.50120 0.92605 1.19090 0.94067 0.91479 0.97067 1.21571 0.99061 0.92349 1.00855 1.22503 0.93854 0.91437 1.00524 1.65482 1.28412 1.01776 1.26945 1.23240 0.99729 0.95404 0.90736 1.22621 0.94539 0.94785 0.98391 0.88317 1.22391 0.94786 0.99034 0.98777 1.22511 0.96863 0.98319 0.98601 1.22400 0.93240 1.01947 0.96333 1.21793 0.95950 0.90794 0.97739 1.23178 0.76015 0.82388 0.84531 1.90694 1.61931 1.69756 1.17693 1.84554 1.57530 1.43793 1.46457 1.23074 0.94299 0.88762 1.01686 0.93117 0.96619 0.96864 0.93531 0.92521 0.91057 0.94891 0.93684 0.89054 0.89952 0.91520 0.91955 0.90867 0.91174 0.88948 0.73343 0.88804 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.04 0.76 4.83 -3.83 -0.02 0.74 16 12 N -0.50 -7.32 5.34 -230.10 -1.23 -8.54 16 13 C 0.04 0.50 5.24 -2.23 -0.01 0.49 16 14 C -0.08 -1.00 3.43 -88.31 -0.30 -1.30 16 15 H 0.10 1.25 6.77 -51.93 -0.35 0.90 16 16 C -0.11 -1.14 6.28 -25.15 -0.16 -1.30 16 17 C -0.13 -1.12 6.90 -24.79 -0.17 -1.29 16 18 C -0.10 -0.97 5.88 -25.15 -0.15 -1.12 16 19 C -0.06 -0.69 0.89 -153.36 -0.14 -0.82 16 20 C 0.50 5.71 6.94 36.00 0.25 5.96 16 21 O -0.51 -7.23 16.24 -18.75 -0.30 -7.54 16 22 O -0.51 -4.44 13.25 -39.26 -0.52 -4.96 16 23 C 0.05 0.63 5.34 -2.23 -0.01 0.61 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.95 7.46 -51.93 -0.39 0.57 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.03 0.58 7.77 -51.92 -0.40 0.18 16 31 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 32 H 0.09 1.25 7.45 -51.93 -0.39 0.87 16 33 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 7.73 -51.93 -0.40 0.20 16 38 H 0.09 0.91 7.64 -51.93 -0.40 0.51 16 39 H 0.41 1.77 9.10 45.56 0.41 2.19 16 40 H 0.09 1.08 7.75 -51.93 -0.40 0.68 16 41 H 0.04 0.56 7.79 -51.93 -0.40 0.16 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -32.28 327.36 -8.82 -41.10 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.02 Total: -1.92 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.40 Total: -13.42 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.49 Total: -34.99 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.82 Total: -12.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.28 -8.82 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701455358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.641 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds