Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48503 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46949 * 300.00345 * 3 2 1 6 6 H 1.48498 * 109.46974 * 59.99839 * 3 2 1 7 7 C 1.37875 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47737 * 179.97438 * 11 10 9 13 13 C 1.48537 * 110.99862 * 74.59177 * 12 11 10 14 14 C 1.54319 * 104.67093 * 159.19635 * 13 12 11 15 15 H 1.09002 * 111.82469 * 214.58222 * 14 13 12 16 16 C 1.54169 * 109.64565 * 89.99189 * 14 13 12 17 17 C 1.54842 * 104.32443 * 223.31373 * 16 14 13 18 18 C 1.54846 * 102.73338 * 38.18461 * 17 16 14 19 19 C 1.54161 * 104.32439 * 321.81029 * 18 17 16 20 20 C 1.50697 * 111.79856 * 261.29968 * 19 18 17 21 21 O 1.20829 * 119.99934 * 119.22250 * 20 19 18 22 22 O 1.34229 * 119.99967 * 299.22997 * 20 19 18 23 23 C 1.48525 * 111.00346 * 190.00025 * 12 11 10 24 24 H 0.96994 * 119.99858 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47395 * 59.99838 * 9 7 2 26 26 H 1.09006 * 109.46780 * 299.99496 * 9 7 2 27 27 H 1.09004 * 109.47509 * 59.99485 * 10 9 7 28 28 H 1.08998 * 109.47144 * 299.99598 * 10 9 7 29 29 H 1.08997 * 109.47388 * 59.99181 * 11 10 9 30 30 H 1.09007 * 109.47295 * 299.99867 * 11 10 9 31 31 H 1.08998 * 110.39221 * 40.40166 * 13 12 11 32 32 H 1.08997 * 110.39685 * 277.99917 * 13 12 11 33 33 H 1.09001 * 110.46119 * 342.02809 * 16 14 13 34 34 H 1.09003 * 110.45867 * 104.60658 * 16 14 13 35 35 H 1.08995 * 110.76300 * 279.87192 * 17 16 14 36 36 H 1.08998 * 110.91506 * 156.56752 * 17 16 14 37 37 H 1.09003 * 110.46605 * 203.10286 * 18 17 16 38 38 H 1.09003 * 110.57365 * 80.57743 * 18 17 16 39 39 H 0.96699 * 116.99756 * 179.97438 * 22 20 19 40 40 H 1.09001 * 110.39814 * 82.00159 * 23 12 11 41 41 H 1.09003 * 110.39882 * 319.59729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4350 -6.1037 -0.0049 13 6 3.0619 -6.2700 1.3314 14 6 3.5836 -7.7222 1.3403 15 1 3.5081 -8.1739 2.3295 16 6 5.0285 -7.7572 0.8038 17 6 5.0562 -8.9824 -0.1426 18 6 3.6674 -8.9184 -0.8244 19 6 2.7121 -8.4659 0.2978 20 6 1.9755 -9.6299 0.9089 21 8 2.1092 -9.8800 2.0834 22 8 1.1710 -10.3890 0.1484 23 6 1.7428 -7.3954 -0.2462 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8721 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.8534 -5.0443 -0.8930 30 1 0.8540 -5.0454 0.8869 31 1 2.3216 -6.1274 2.1186 32 1 3.8874 -5.5689 1.4536 33 1 5.2523 -6.8442 0.2520 34 1 5.7357 -7.8919 1.6223 35 1 5.1659 -9.9065 0.4247 36 1 5.8533 -8.8866 -0.8799 37 1 3.3797 -9.9019 -1.1961 38 1 3.6725 -8.1916 -1.6367 39 1 0.7200 -11.1246 0.5850 40 1 1.5742 -7.5426 -1.3130 41 1 0.7980 -7.4274 0.2965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701455358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = -130.160990 kcal Electronic energy + Delta-G solvation = -20815.044997 eV Core-core repulsion = 17692.697113 eV Total energy + Delta-G solvation = -3122.347884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19371 -40.12653 -37.33403 -37.06054 -35.46221 -33.41585 -31.93411 -30.55601 -27.98876 -26.66516 -25.19778 -23.96654 -22.52465 -21.93218 -21.61081 -19.99845 -18.89021 -18.56254 -17.94817 -16.81850 -16.58499 -16.42640 -16.06287 -15.49605 -15.31297 -15.09401 -14.92931 -14.50713 -14.30407 -13.69032 -13.53833 -13.18937 -12.90129 -12.71622 -12.65869 -12.47990 -12.31691 -12.29556 -12.05115 -11.93975 -11.82506 -11.73699 -11.61782 -11.42270 -11.36847 -11.26349 -11.03713 -10.55012 -9.53995 -8.19586 -6.30323 1.07008 1.40886 1.40925 1.54701 1.96602 2.41726 3.01069 3.13836 3.15047 3.37222 3.63825 4.08880 4.12694 4.20441 4.24401 4.28436 4.35574 4.39883 4.52755 4.63903 4.71178 4.71441 4.76078 4.88017 4.93763 4.95360 5.03841 5.08127 5.18704 5.21564 5.25844 5.27780 5.47626 5.53233 5.54637 5.71796 5.84429 5.87106 5.96114 6.27544 6.86777 6.92118 7.39054 8.92652 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.003653 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.423218 B = 7663.224679 C = 8056.920991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.084 4.084 11 C 0.056 3.944 12 N -0.502 5.502 13 C 0.034 3.966 14 C -0.082 4.082 15 H 0.090 0.910 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.061 4.061 20 C 0.503 3.497 21 O -0.544 6.544 22 O -0.504 6.504 23 C 0.050 3.950 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.012 1.012 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.428 0.572 40 H 0.108 0.892 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -22.259 -1.067 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.122 4.122 11 C -0.072 4.072 12 N -0.225 5.225 13 C -0.093 4.093 14 C -0.101 4.101 15 H 0.108 0.892 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.135 4.135 19 C -0.063 4.063 20 C 0.346 3.654 21 O -0.434 6.434 22 O -0.317 6.317 23 C -0.078 4.078 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.006 0.994 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.290 0.710 40 H 0.126 0.874 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.964 -21.776 -1.371 23.227 hybrid contribution -1.246 0.499 1.239 1.826 sum 6.719 -21.277 -0.133 22.313 Atomic orbital electron populations 1.70104 1.07820 1.27677 1.51917 1.25984 0.95761 1.03377 0.94752 0.85398 0.79130 0.78745 0.77778 1.18529 1.20276 1.20449 1.21717 0.93543 0.92342 1.50219 0.92219 1.18992 0.94453 0.93197 0.94699 1.21294 0.97840 0.92290 1.00763 1.22222 0.93713 0.90974 1.00313 1.65412 1.27720 1.01987 1.27419 1.23267 0.99269 0.96927 0.89885 1.22567 0.95882 0.93241 0.98401 0.89223 1.22376 0.93652 0.99460 0.99320 1.22508 0.96991 0.97710 0.98573 1.22412 0.92987 1.02577 0.95546 1.21791 0.95883 0.90519 0.98091 1.23116 0.75858 0.82411 0.84035 1.90691 1.63070 1.70701 1.18934 1.84503 1.56877 1.44271 1.46062 1.23127 0.94177 0.87922 1.02555 0.92804 0.98816 0.99393 0.93492 0.92521 0.90821 0.95683 0.94979 0.89302 0.90653 0.90586 0.91549 0.89317 0.89827 0.88983 0.70994 0.87404 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.08 -3.51 5.27 30.59 0.16 -3.35 16 11 C 0.06 1.94 4.83 86.30 0.42 2.35 16 12 N -0.50 -14.31 5.34 -881.90 -4.71 -19.01 16 13 C 0.03 0.94 5.24 86.43 0.45 1.39 16 14 C -0.08 -1.87 3.43 -9.30 -0.03 -1.90 16 15 H 0.09 2.24 6.77 -2.39 -0.02 2.22 16 16 C -0.11 -2.06 6.28 31.62 0.20 -1.86 16 17 C -0.12 -1.84 6.90 31.85 0.22 -1.63 16 18 C -0.10 -1.61 5.88 31.62 0.19 -1.43 16 19 C -0.06 -1.28 0.89 -51.44 -0.05 -1.33 16 20 C 0.50 10.74 6.94 71.23 0.49 11.24 16 21 O -0.54 -14.82 16.24 21.95 0.36 -14.46 16 22 O -0.50 -7.55 13.25 -51.41 -0.68 -8.23 16 23 C 0.05 1.19 5.34 86.44 0.46 1.65 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 27 H 0.05 1.94 7.46 -2.38 -0.02 1.92 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 30 H 0.02 0.90 7.77 -2.38 -0.02 0.88 16 31 H 0.03 0.95 7.75 -2.39 -0.02 0.93 16 32 H 0.09 2.43 7.45 -2.39 -0.02 2.41 16 33 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.17 7.73 -2.39 -0.02 1.16 16 38 H 0.09 1.56 7.64 -2.39 -0.02 1.54 16 39 H 0.43 2.69 9.10 -74.06 -0.67 2.01 16 40 H 0.11 2.27 7.75 -2.39 -0.02 2.25 16 41 H 0.04 0.93 7.79 -2.39 -0.02 0.91 16 Total: -1.00 -69.22 327.36 0.97 -68.25 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.34 Total: 8.00 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.36 Total: -24.01 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -4.42 Total: -76.24 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.32 Total: -22.69 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.22 0.97 -68.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701455358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.912 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds