Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48496 * 109.47037 * 270.00017 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99922 * 3 2 1 6 6 H 1.48499 * 109.47164 * 149.99848 * 3 2 1 7 7 C 1.38815 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.65477 * 359.94494 * 9 7 2 11 11 C 1.54904 * 104.83394 * 155.91793 * 10 9 7 12 12 H 1.08995 * 111.00312 * 278.93160 * 11 10 9 13 13 C 1.53011 * 111.00242 * 155.08404 * 11 10 9 14 14 C 1.52999 * 109.46644 * 187.80444 * 13 11 10 15 15 C 1.53005 * 109.46717 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47390 * 59.99433 * 15 14 13 17 17 C 1.53000 * 109.47159 * 300.00185 * 16 15 14 18 18 C 1.52993 * 109.46867 * 67.80449 * 13 11 10 19 19 C 1.55155 * 101.58419 * 37.00859 * 11 10 9 20 20 C 1.47022 * 125.64509 * 179.97438 * 9 7 2 21 21 H 1.08998 * 110.01141 * 61.52317 * 20 9 7 22 22 C 1.50700 * 109.88426 * 300.42979 * 20 9 7 23 23 O 1.20822 * 119.99958 * 342.18988 * 22 20 9 24 24 O 1.34234 * 120.00068 * 162.19180 * 22 20 9 25 25 H 0.97001 * 119.99575 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.36492 * 37.07676 * 10 9 7 27 27 H 1.09001 * 110.36009 * 274.75916 * 10 9 7 28 28 H 1.08998 * 109.46815 * 307.80028 * 13 11 10 29 29 H 1.08998 * 109.47175 * 299.99364 * 14 13 11 30 30 H 1.08995 * 109.47669 * 60.00338 * 14 13 11 31 31 H 1.09007 * 109.46700 * 299.99334 * 15 14 13 32 32 H 1.09002 * 109.46952 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.46872 * 180.02562 * 16 15 14 34 34 H 1.08999 * 109.46751 * 60.00567 * 16 15 14 35 35 H 1.08999 * 109.47602 * 299.99862 * 17 16 15 36 36 H 1.08998 * 109.46686 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47298 * 299.99654 * 18 13 11 38 38 H 1.08998 * 109.47746 * 60.00149 * 18 13 11 39 39 H 1.09002 * 110.71867 * 206.13318 * 19 11 10 40 40 H 1.09008 * 110.87187 * 82.93236 * 19 11 10 41 41 H 0.96698 * 117.00153 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1416 -2.5332 0.0012 11 6 -0.4019 -3.9325 -0.6101 12 1 -0.3528 -3.8987 -1.6984 13 6 -1.7456 -4.4944 -0.1412 14 6 -1.8803 -5.9466 -0.6037 15 6 -3.2243 -6.5083 -0.1354 16 6 -4.3608 -5.6755 -0.7317 17 6 -4.2260 -4.2234 -0.2692 18 6 -2.8824 -3.6618 -0.7372 19 6 0.7783 -4.7524 -0.0253 20 6 1.9317 -3.7274 0.0005 21 1 2.5304 -3.8659 0.9008 22 6 2.7970 -3.8984 -1.2214 23 8 2.6625 -3.1565 -2.1655 24 8 3.7171 -4.8750 -1.2610 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5996 -1.7591 -0.6145 27 1 -0.5269 -2.4864 1.0197 28 1 -1.7968 -4.4534 0.9468 29 1 -1.8292 -5.9877 -1.6917 30 1 -1.0705 -6.5398 -0.1791 31 1 -3.2759 -6.4672 0.9527 32 1 -3.3205 -7.5428 -0.4652 33 1 -5.3182 -6.0755 -0.3976 34 1 -4.3092 -5.7167 -1.8197 35 1 -4.2777 -4.1822 0.8188 36 1 -5.0355 -3.6300 -0.6944 37 1 -2.7864 -2.6272 -0.4077 38 1 -2.8312 -3.7028 -1.8252 39 1 1.0236 -5.5925 -0.6750 40 1 0.5483 -5.1000 0.9820 41 1 4.2480 -4.9457 -2.0661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = -94.158295 kcal Electronic energy + Delta-G solvation = -21649.718776 eV Core-core repulsion = 18528.932086 eV Total energy + Delta-G solvation = -3120.786690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.72532 -38.64464 -36.65913 -35.14376 -32.98293 -31.37058 -30.55913 -28.71651 -27.59013 -24.70997 -23.02933 -22.17746 -21.74811 -19.60128 -19.43880 -19.34542 -17.20019 -16.97828 -16.06424 -15.21718 -14.82013 -14.64995 -14.19689 -13.89942 -13.83169 -13.36177 -13.14921 -12.50082 -12.31732 -12.13043 -11.95235 -11.82955 -11.69404 -11.20016 -11.00496 -10.89470 -10.84710 -10.80971 -10.66537 -10.25032 -10.22726 -10.12127 -9.99519 -9.82518 -9.57319 -9.42823 -9.24276 -8.68351 -6.99381 -5.70123 -3.12498 3.11443 3.39449 3.45713 3.46639 3.82155 4.45660 4.88637 4.94174 4.98578 5.29083 5.35039 5.38625 5.47113 5.51327 5.64741 5.72995 5.75325 5.78872 5.85168 5.93466 5.98120 6.09875 6.18922 6.20897 6.24754 6.34173 6.37159 6.42017 6.47994 6.59719 6.64298 6.68385 6.80520 6.94208 7.22647 7.50000 7.57397 7.82249 8.29375 8.76836 9.14491 9.73504 10.33129 11.32771 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.006808 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.784833 B = 4111.882194 C = 5412.131636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.075 0.925 9 N -0.567 5.567 10 C 0.159 3.841 11 C -0.113 4.113 12 H 0.069 0.931 13 C -0.067 4.067 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.109 4.109 20 C 0.170 3.830 21 H 0.068 0.932 22 C 0.443 3.557 23 O -0.497 6.497 24 O -0.537 6.537 25 H 0.253 0.747 26 H 0.109 0.891 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -12.496 0.107 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.198 4.198 3 Si 0.747 3.253 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.289 5.289 10 C 0.036 3.964 11 C -0.133 4.133 12 H 0.087 0.913 13 C -0.086 4.086 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.147 4.147 20 C 0.058 3.942 21 H 0.086 0.914 22 C 0.281 3.719 23 O -0.382 6.382 24 O -0.348 6.348 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.267 -11.955 0.220 13.066 hybrid contribution 1.029 0.804 -0.740 1.501 sum -4.238 -11.151 -0.521 11.940 Atomic orbital electron populations 1.69800 1.04848 1.24991 1.56708 1.24773 0.95762 0.97761 1.01534 0.86039 0.78557 0.83006 0.77673 1.21459 1.21518 1.20653 1.18993 0.90420 0.82107 1.43519 0.90727 1.44573 1.02239 0.98409 1.83680 1.22066 0.83266 0.92572 0.98544 1.22722 0.92274 0.98263 1.00027 0.91250 1.21010 0.94041 0.93580 1.00000 1.21620 0.96476 0.96388 1.00742 1.21529 0.95209 0.98328 1.00476 1.21535 0.97795 0.95833 1.00439 1.21529 0.97808 0.95447 1.00806 1.21566 0.93201 1.00160 1.00291 1.22521 0.94441 0.96248 1.01492 1.20815 0.92651 0.89196 0.91545 0.91413 1.26207 0.78060 0.76187 0.91412 1.90653 1.66872 1.42884 1.37747 1.84695 1.49353 1.54477 1.46247 0.93580 0.87287 0.95951 0.91333 0.92396 0.92127 0.92211 0.92714 0.92780 0.92330 0.92216 0.92508 0.90731 0.92448 0.91708 0.90410 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 3 Si 0.92 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.28 9.44 -15.06 -0.14 -6.42 16 8 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.57 -14.43 2.85 -163.88 -0.47 -14.89 16 10 C 0.16 3.75 4.61 -2.53 -0.01 3.73 16 11 C -0.11 -2.10 2.56 -88.47 -0.23 -2.32 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.07 -1.01 1.72 -90.62 -0.16 -1.17 16 14 C -0.11 -1.45 4.98 -26.73 -0.13 -1.59 16 15 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 17 C -0.12 -1.47 5.92 -26.75 -0.16 -1.62 16 18 C -0.11 -1.71 5.06 -26.76 -0.14 -1.85 16 19 C -0.11 -1.87 4.82 -24.90 -0.12 -1.98 16 20 C 0.17 3.57 3.65 -68.10 -0.25 3.32 16 21 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 22 C 0.44 9.33 7.21 36.01 0.26 9.59 16 23 O -0.50 -12.42 16.83 -18.75 -0.32 -12.74 16 24 O -0.54 -8.88 13.42 -39.27 -0.53 -9.41 16 25 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.11 2.93 5.81 -51.93 -0.30 2.63 16 27 H 0.02 0.55 7.98 -51.93 -0.41 0.13 16 28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.74 7.28 -51.93 -0.38 0.36 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.27 7.51 -51.93 -0.39 0.88 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 40 H 0.08 1.19 8.04 -51.92 -0.42 0.77 16 41 H 0.39 4.73 9.10 45.56 0.41 5.15 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -31.62 320.51 -8.51 -40.13 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.08 Total: 3.78 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.48 Total: -3.39 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.09 Total: -40.69 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.84 Total: -22.15 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.62 -8.51 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.027 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds