Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48496 * 109.47037 * 270.00017 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99922 * 3 2 1 6 6 H 1.48499 * 109.47164 * 149.99848 * 3 2 1 7 7 C 1.38815 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.65477 * 359.94494 * 9 7 2 11 11 C 1.54904 * 104.83394 * 155.91793 * 10 9 7 12 12 H 1.08995 * 111.00312 * 278.93160 * 11 10 9 13 13 C 1.53011 * 111.00242 * 155.08404 * 11 10 9 14 14 C 1.52999 * 109.46644 * 187.80444 * 13 11 10 15 15 C 1.53005 * 109.46717 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47390 * 59.99433 * 15 14 13 17 17 C 1.53000 * 109.47159 * 300.00185 * 16 15 14 18 18 C 1.52993 * 109.46867 * 67.80449 * 13 11 10 19 19 C 1.55155 * 101.58419 * 37.00859 * 11 10 9 20 20 C 1.47022 * 125.64509 * 179.97438 * 9 7 2 21 21 H 1.08998 * 110.01141 * 61.52317 * 20 9 7 22 22 C 1.50700 * 109.88426 * 300.42979 * 20 9 7 23 23 O 1.20822 * 119.99958 * 342.18988 * 22 20 9 24 24 O 1.34234 * 120.00068 * 162.19180 * 22 20 9 25 25 H 0.97001 * 119.99575 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.36492 * 37.07676 * 10 9 7 27 27 H 1.09001 * 110.36009 * 274.75916 * 10 9 7 28 28 H 1.08998 * 109.46815 * 307.80028 * 13 11 10 29 29 H 1.08998 * 109.47175 * 299.99364 * 14 13 11 30 30 H 1.08995 * 109.47669 * 60.00338 * 14 13 11 31 31 H 1.09007 * 109.46700 * 299.99334 * 15 14 13 32 32 H 1.09002 * 109.46952 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.46872 * 180.02562 * 16 15 14 34 34 H 1.08999 * 109.46751 * 60.00567 * 16 15 14 35 35 H 1.08999 * 109.47602 * 299.99862 * 17 16 15 36 36 H 1.08998 * 109.46686 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47298 * 299.99654 * 18 13 11 38 38 H 1.08998 * 109.47746 * 60.00149 * 18 13 11 39 39 H 1.09002 * 110.71867 * 206.13318 * 19 11 10 40 40 H 1.09008 * 110.87187 * 82.93236 * 19 11 10 41 41 H 0.96698 * 117.00153 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1416 -2.5332 0.0012 11 6 -0.4019 -3.9325 -0.6101 12 1 -0.3528 -3.8987 -1.6984 13 6 -1.7456 -4.4944 -0.1412 14 6 -1.8803 -5.9466 -0.6037 15 6 -3.2243 -6.5083 -0.1354 16 6 -4.3608 -5.6755 -0.7317 17 6 -4.2260 -4.2234 -0.2692 18 6 -2.8824 -3.6618 -0.7372 19 6 0.7783 -4.7524 -0.0253 20 6 1.9317 -3.7274 0.0005 21 1 2.5304 -3.8659 0.9008 22 6 2.7970 -3.8984 -1.2214 23 8 2.6625 -3.1565 -2.1655 24 8 3.7171 -4.8750 -1.2610 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5996 -1.7591 -0.6145 27 1 -0.5269 -2.4864 1.0197 28 1 -1.7968 -4.4534 0.9468 29 1 -1.8292 -5.9877 -1.6917 30 1 -1.0705 -6.5398 -0.1791 31 1 -3.2759 -6.4672 0.9527 32 1 -3.3205 -7.5428 -0.4652 33 1 -5.3182 -6.0755 -0.3976 34 1 -4.3092 -5.7167 -1.8197 35 1 -4.2777 -4.1822 0.8188 36 1 -5.0355 -3.6300 -0.6944 37 1 -2.7864 -2.6272 -0.4077 38 1 -2.8312 -3.7028 -1.8252 39 1 1.0236 -5.5925 -0.6750 40 1 0.5483 -5.1000 0.9820 41 1 4.2480 -4.9457 -2.0661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -113.306761 kcal Electronic energy + Delta-G solvation = -21650.549116 eV Core-core repulsion = 18528.932086 eV Total energy + Delta-G solvation = -3121.617030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35471 -39.95905 -38.13731 -36.76767 -34.80551 -32.91398 -31.62554 -30.46503 -29.11270 -26.57645 -24.51800 -23.41613 -23.07209 -21.15258 -20.88974 -20.57180 -18.97029 -18.78453 -17.71370 -16.74260 -16.51248 -16.13875 -15.78051 -15.21567 -14.92550 -14.72725 -14.54860 -13.99471 -13.94311 -13.65075 -13.47549 -13.32846 -12.95672 -12.80374 -12.77450 -12.43958 -12.36525 -12.06142 -11.95568 -11.93218 -11.86478 -11.60765 -11.51018 -11.24638 -11.12134 -10.79970 -10.70273 -10.58675 -9.01720 -7.81069 -5.26452 1.41153 1.43740 1.44648 1.52262 2.27369 2.47101 3.34519 3.50910 3.73325 3.83240 3.90605 4.06861 4.17596 4.23919 4.47833 4.53467 4.57372 4.64288 4.69528 4.74970 4.78834 4.81160 4.91660 4.95237 5.03866 5.14045 5.22761 5.28236 5.36255 5.37509 5.41580 5.46186 5.52687 5.61462 5.67258 5.75162 5.77795 5.81455 6.28176 7.04951 7.22053 7.69143 8.29247 9.18923 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.006808 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.784833 B = 4111.882194 C = 5412.131636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.058 4.058 3 Si 0.975 3.025 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.099 4.099 12 H 0.048 0.952 13 C -0.060 4.060 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.095 4.095 20 C 0.156 3.844 21 H 0.082 0.918 22 C 0.454 3.546 23 O -0.544 6.544 24 O -0.516 6.516 25 H 0.248 0.752 26 H 0.068 0.932 27 H 0.004 0.996 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -15.158 0.551 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.251 4.251 3 Si 0.804 3.196 4 H -0.220 1.220 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.043 3.957 11 C -0.119 4.119 12 H 0.067 0.933 13 C -0.079 4.079 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.133 4.133 20 C 0.045 3.955 21 H 0.099 0.901 22 C 0.295 3.705 23 O -0.433 6.433 24 O -0.328 6.328 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.079 -14.678 0.670 15.546 hybrid contribution 1.083 1.567 -0.902 2.107 sum -3.996 -13.111 -0.232 13.709 Atomic orbital electron populations 1.70055 1.05861 1.25061 1.57752 1.25561 0.96702 1.00721 1.02142 0.85132 0.77883 0.79414 0.77210 1.21999 1.21184 1.19437 1.19193 0.90408 0.83713 1.42944 0.91390 1.44740 1.03080 0.99434 1.84263 1.21764 0.82457 0.94558 0.96903 1.22523 0.95184 0.95741 0.98431 0.93343 1.20953 0.91712 0.95348 0.99861 1.21582 0.98322 0.94191 1.00624 1.21524 0.93726 0.99170 1.00795 1.21534 0.98959 0.94421 1.00464 1.21498 0.95980 0.96800 1.00918 1.21523 0.95294 0.98594 0.99798 1.22560 0.91704 0.95506 1.03505 1.21117 0.94314 0.88263 0.91778 0.90068 1.25795 0.78252 0.76021 0.90461 1.90652 1.68449 1.44861 1.39325 1.84580 1.48376 1.52228 1.47648 0.94206 0.91437 0.97785 0.91282 0.92702 0.90768 0.91681 0.90696 0.90859 0.92381 0.91993 0.92084 0.94140 0.93196 0.89074 0.87766 0.72713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.58 10.09 21.65 0.22 -56.36 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 3 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.23 -13.55 9.44 84.04 0.79 -12.76 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.59 -30.83 2.85 -672.40 -1.91 -32.74 16 10 C 0.17 8.20 4.61 86.85 0.40 8.60 16 11 C -0.10 -3.67 2.56 -9.40 -0.02 -3.70 16 12 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.06 -1.75 1.72 -10.79 -0.02 -1.77 16 14 C -0.11 -2.47 4.98 30.60 0.15 -2.31 16 15 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 16 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 17 C -0.11 -2.71 5.92 30.58 0.18 -2.53 16 18 C -0.11 -3.50 5.06 30.58 0.15 -3.34 16 19 C -0.10 -3.04 4.82 31.78 0.15 -2.88 16 20 C 0.16 6.38 3.65 44.60 0.16 6.55 16 21 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 22 C 0.45 18.52 7.21 71.24 0.51 19.04 16 23 O -0.54 -27.27 16.83 21.98 0.37 -26.90 16 24 O -0.52 -15.47 13.42 -51.46 -0.69 -16.17 16 25 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.07 3.89 5.81 -2.39 -0.01 3.87 16 27 H 0.00 0.21 7.98 -2.39 -0.02 0.19 16 28 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.49 7.28 -2.39 -0.02 1.47 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.48 7.51 -2.39 -0.02 1.46 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.47 7.79 -2.39 -0.02 2.45 16 40 H 0.10 2.82 8.04 -2.38 -0.02 2.80 16 41 H 0.41 8.69 9.10 -74.06 -0.67 8.02 16 Total: -1.00 -71.55 320.51 3.64 -67.91 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.33 Total: 16.83 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 3.30 Total: -2.03 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -1.69 Total: -89.10 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.32 Total: -43.06 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -71.55 3.64 -67.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.399 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds