Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99926 * 2 1 4 4 H 1.48497 * 109.47237 * 275.11528 * 3 2 1 5 5 H 1.48504 * 109.47043 * 35.11904 * 3 2 1 6 6 H 1.48505 * 109.46919 * 155.11456 * 3 2 1 7 7 C 1.38812 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00043 * 333.42053 * 7 2 1 9 9 N 1.36938 * 119.99943 * 153.41978 * 7 2 1 10 10 C 1.47422 * 125.64813 * 334.08272 * 9 7 2 11 11 C 1.54912 * 104.83206 * 155.90454 * 10 9 7 12 12 H 1.08995 * 111.00403 * 278.93721 * 11 10 9 13 13 C 1.53003 * 111.00353 * 155.11881 * 11 10 9 14 14 C 1.52997 * 109.46982 * 181.45652 * 13 11 10 15 15 C 1.53003 * 109.46982 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47202 * 60.00099 * 15 14 13 17 17 C 1.52998 * 109.47155 * 300.00228 * 16 15 14 18 18 C 1.52997 * 109.47662 * 59.99541 * 17 16 15 19 19 C 1.55551 * 101.59559 * 37.04332 * 11 10 9 20 20 C 1.47020 * 125.64803 * 154.12072 * 9 7 2 21 21 H 1.09005 * 109.88406 * 300.44459 * 20 9 7 22 22 C 1.50701 * 109.88077 * 61.45041 * 20 9 7 23 23 O 1.20829 * 119.99749 * 18.28606 * 22 20 9 24 24 O 1.34232 * 120.00018 * 198.28171 * 22 20 9 25 25 H 0.96998 * 119.99818 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.36636 * 274.74207 * 10 9 7 27 27 H 1.08998 * 110.36869 * 37.06575 * 10 9 7 28 28 H 1.09004 * 109.46984 * 301.45669 * 13 11 10 29 29 H 1.09004 * 109.47275 * 299.99839 * 14 13 11 30 30 H 1.08996 * 109.47424 * 60.00116 * 14 13 11 31 31 H 1.08997 * 109.47569 * 299.99773 * 15 14 13 32 32 H 1.09001 * 109.46920 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47377 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.47540 * 59.99685 * 16 15 14 35 35 H 1.09004 * 109.46921 * 300.00014 * 17 16 15 36 36 H 1.08996 * 109.47508 * 179.97438 * 17 16 15 37 37 H 1.08991 * 109.47442 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47004 * 60.00016 * 18 17 16 39 39 H 1.09000 * 110.83315 * 206.14950 * 19 11 10 40 40 H 1.09002 * 110.78023 * 82.75876 * 19 11 10 41 41 H 0.96699 * 116.99499 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3896 2.1089 -1.3945 5 1 1.5059 2.6190 0.8055 6 1 3.5976 1.4114 0.5892 7 6 2.0103 -1.2022 -0.0005 8 1 1.5559 -2.0882 0.4175 9 7 3.2711 -1.2646 -0.5312 10 6 3.8099 -0.3716 -1.5731 11 6 5.3463 -0.4190 -1.3802 12 1 5.6595 0.2449 -0.5745 13 6 6.0733 -0.0773 -2.6824 14 6 7.5845 -0.1697 -2.4622 15 6 8.3114 0.1713 -3.7645 16 6 7.9450 1.5927 -4.1960 17 6 6.4338 1.6853 -4.4161 18 6 5.7067 1.3442 -3.1139 19 6 5.5670 -1.9093 -0.9931 20 6 4.3113 -2.2338 -0.1568 21 1 4.5391 -2.1415 0.9051 22 6 3.8410 -3.6330 -0.4601 23 8 2.9216 -3.8091 -1.2242 24 8 4.4434 -4.6838 0.1185 25 1 -0.4850 0.8400 0.0004 26 1 3.5405 -0.7383 -2.5635 27 1 3.4409 0.6440 -1.4303 28 1 5.7756 -0.7808 -3.4600 29 1 7.8821 0.5337 -1.6845 30 1 7.8456 -1.1825 -2.1552 31 1 8.0139 -0.5324 -4.5419 32 1 9.3881 0.1059 -3.6075 33 1 8.4625 1.8356 -5.1240 34 1 8.2426 2.2966 -3.4187 35 1 6.1361 0.9814 -5.1935 36 1 6.1726 2.6980 -4.7231 37 1 4.6302 1.4096 -3.2709 38 1 6.0044 2.0479 -2.3365 39 1 6.4700 -2.0245 -0.3936 40 1 5.6108 -2.5375 -1.8828 41 1 4.1069 -5.5618 -0.1072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -89.264185 kcal Electronic energy + Delta-G solvation = -21686.579766 eV Core-core repulsion = 18566.005301 eV Total energy + Delta-G solvation = -3120.574465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.89769 -38.88715 -36.94628 -35.26940 -33.03571 -31.60457 -30.81702 -29.53025 -27.91459 -24.67567 -23.10650 -22.47801 -22.10189 -19.92068 -19.69887 -19.43570 -17.47943 -17.05268 -16.02721 -15.61452 -15.41302 -14.77188 -14.34404 -14.08491 -13.94614 -13.64806 -13.01689 -12.97613 -12.73172 -12.56396 -12.33034 -12.12637 -11.63044 -11.45385 -11.32068 -11.20063 -11.10350 -10.95213 -10.79369 -10.63703 -10.47447 -10.29675 -10.18548 -9.84630 -9.66999 -9.61638 -9.41658 -8.57964 -7.13711 -6.01898 -3.33127 3.00166 3.29174 3.43976 3.48746 3.70098 4.49446 4.63100 4.69530 4.76603 4.91712 5.05300 5.14672 5.22101 5.30211 5.41849 5.48006 5.53429 5.56728 5.64419 5.69127 5.73102 5.87697 5.93191 6.01042 6.03958 6.10453 6.14637 6.18331 6.19477 6.25710 6.33908 6.44983 6.47221 6.59367 6.61388 6.85909 7.13850 7.66238 8.25095 8.68264 8.78331 9.61826 10.07952 11.13713 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.008036 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.605259 B = 3483.365446 C = 4894.405455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.034 3.966 3 Si 0.875 3.125 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.085 0.915 9 N -0.575 5.575 10 C 0.125 3.875 11 C -0.101 4.101 12 H 0.081 0.919 13 C -0.073 4.073 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.170 3.830 21 H 0.079 0.921 22 C 0.449 3.551 23 O -0.496 6.496 24 O -0.533 6.533 25 H 0.265 0.735 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.438 0.005 -5.463 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.167 4.167 3 Si 0.706 3.294 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.375 4.375 8 H 0.103 0.897 9 N -0.299 5.299 10 C 0.001 3.999 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.092 4.092 14 C -0.151 4.151 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.145 4.145 20 C 0.059 3.941 21 H 0.096 0.904 22 C 0.288 3.712 23 O -0.380 6.380 24 O -0.344 6.344 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 17.025 0.466 -5.531 17.907 hybrid contribution -0.090 0.254 -0.124 0.297 sum 16.936 0.720 -5.655 17.869 Atomic orbital electron populations 1.69929 1.05840 1.26792 1.50735 1.25062 0.95007 0.97487 0.99095 0.86938 0.80546 0.84821 0.77112 1.21210 1.22901 1.19414 1.18496 0.87112 0.95479 1.36423 0.89725 1.44516 1.11380 1.32818 1.41145 1.22003 0.90498 0.94869 0.92521 1.22564 0.96375 0.95743 0.97296 0.90055 1.21095 0.94449 0.97017 0.96670 1.21589 0.94735 1.01518 0.97243 1.21529 0.99421 0.96797 0.97857 1.21534 0.96225 0.97133 1.00731 1.21530 0.95016 1.01146 0.97924 1.21633 1.00568 0.96480 0.97036 1.22576 0.95859 0.96648 0.99441 1.20573 0.89828 0.84022 0.99664 0.90378 1.25620 0.80334 0.88192 0.77092 1.90682 1.27484 1.85923 1.33920 1.84637 1.62350 1.18317 1.69110 0.92559 0.94499 0.93175 0.90971 0.92019 0.91823 0.92134 0.92403 0.92536 0.92179 0.92053 0.92301 0.91494 0.92049 0.90130 0.91128 0.75112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.97 55.49 0.78 -27.02 16 2 C 0.03 1.00 5.39 -17.43 -0.09 0.90 16 3 Si 0.88 22.10 24.93 -169.99 -4.24 17.86 16 4 H -0.28 -6.95 6.76 56.52 0.38 -6.57 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -7.21 9.75 -15.06 -0.15 -7.36 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.57 -14.04 2.50 -163.88 -0.41 -14.45 16 10 C 0.13 2.69 4.75 -2.53 -0.01 2.68 16 11 C -0.10 -1.64 2.57 -88.25 -0.23 -1.87 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.07 -0.98 1.70 -90.62 -0.15 -1.14 16 14 C -0.11 -1.24 5.05 -26.73 -0.14 -1.37 16 15 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 16 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 17 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 18 C -0.12 -1.61 5.00 -26.73 -0.13 -1.74 16 19 C -0.11 -1.66 5.13 -24.68 -0.13 -1.79 16 20 C 0.17 3.39 3.62 -68.11 -0.25 3.15 16 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 22 C 0.45 9.13 7.23 36.01 0.26 9.39 16 23 O -0.50 -12.14 16.92 -18.75 -0.32 -12.45 16 24 O -0.53 -8.43 13.42 -39.26 -0.53 -8.95 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 27 H 0.05 1.16 2.76 -51.93 -0.14 1.02 16 28 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.02 7.27 -51.93 -0.38 0.64 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 41 H 0.39 4.52 9.10 45.56 0.41 4.94 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -33.74 317.12 -7.39 -41.13 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.96 Total: 2.34 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.49 Total: -3.23 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.37 Total: -41.47 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.84 Total: -21.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.24 Total: 17.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.74 -7.39 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.135 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds