Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99926 * 2 1 4 4 H 1.48497 * 109.47237 * 275.11528 * 3 2 1 5 5 H 1.48504 * 109.47043 * 35.11904 * 3 2 1 6 6 H 1.48505 * 109.46919 * 155.11456 * 3 2 1 7 7 C 1.38812 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00043 * 333.42053 * 7 2 1 9 9 N 1.36938 * 119.99943 * 153.41978 * 7 2 1 10 10 C 1.47422 * 125.64813 * 334.08272 * 9 7 2 11 11 C 1.54912 * 104.83206 * 155.90454 * 10 9 7 12 12 H 1.08995 * 111.00403 * 278.93721 * 11 10 9 13 13 C 1.53003 * 111.00353 * 155.11881 * 11 10 9 14 14 C 1.52997 * 109.46982 * 181.45652 * 13 11 10 15 15 C 1.53003 * 109.46982 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47202 * 60.00099 * 15 14 13 17 17 C 1.52998 * 109.47155 * 300.00228 * 16 15 14 18 18 C 1.52997 * 109.47662 * 59.99541 * 17 16 15 19 19 C 1.55551 * 101.59559 * 37.04332 * 11 10 9 20 20 C 1.47020 * 125.64803 * 154.12072 * 9 7 2 21 21 H 1.09005 * 109.88406 * 300.44459 * 20 9 7 22 22 C 1.50701 * 109.88077 * 61.45041 * 20 9 7 23 23 O 1.20829 * 119.99749 * 18.28606 * 22 20 9 24 24 O 1.34232 * 120.00018 * 198.28171 * 22 20 9 25 25 H 0.96998 * 119.99818 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.36636 * 274.74207 * 10 9 7 27 27 H 1.08998 * 110.36869 * 37.06575 * 10 9 7 28 28 H 1.09004 * 109.46984 * 301.45669 * 13 11 10 29 29 H 1.09004 * 109.47275 * 299.99839 * 14 13 11 30 30 H 1.08996 * 109.47424 * 60.00116 * 14 13 11 31 31 H 1.08997 * 109.47569 * 299.99773 * 15 14 13 32 32 H 1.09001 * 109.46920 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47377 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.47540 * 59.99685 * 16 15 14 35 35 H 1.09004 * 109.46921 * 300.00014 * 17 16 15 36 36 H 1.08996 * 109.47508 * 179.97438 * 17 16 15 37 37 H 1.08991 * 109.47442 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47004 * 60.00016 * 18 17 16 39 39 H 1.09000 * 110.83315 * 206.14950 * 19 11 10 40 40 H 1.09002 * 110.78023 * 82.75876 * 19 11 10 41 41 H 0.96699 * 116.99499 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3896 2.1089 -1.3945 5 1 1.5059 2.6190 0.8055 6 1 3.5976 1.4114 0.5892 7 6 2.0103 -1.2022 -0.0005 8 1 1.5559 -2.0882 0.4175 9 7 3.2711 -1.2646 -0.5312 10 6 3.8099 -0.3716 -1.5731 11 6 5.3463 -0.4190 -1.3802 12 1 5.6595 0.2449 -0.5745 13 6 6.0733 -0.0773 -2.6824 14 6 7.5845 -0.1697 -2.4622 15 6 8.3114 0.1713 -3.7645 16 6 7.9450 1.5927 -4.1960 17 6 6.4338 1.6853 -4.4161 18 6 5.7067 1.3442 -3.1139 19 6 5.5670 -1.9093 -0.9931 20 6 4.3113 -2.2338 -0.1568 21 1 4.5391 -2.1415 0.9051 22 6 3.8410 -3.6330 -0.4601 23 8 2.9216 -3.8091 -1.2242 24 8 4.4434 -4.6838 0.1185 25 1 -0.4850 0.8400 0.0004 26 1 3.5405 -0.7383 -2.5635 27 1 3.4409 0.6440 -1.4303 28 1 5.7756 -0.7808 -3.4600 29 1 7.8821 0.5337 -1.6845 30 1 7.8456 -1.1825 -2.1552 31 1 8.0139 -0.5324 -4.5419 32 1 9.3881 0.1059 -3.6075 33 1 8.4625 1.8356 -5.1240 34 1 8.2426 2.2966 -3.4187 35 1 6.1361 0.9814 -5.1935 36 1 6.1726 2.6980 -4.7231 37 1 4.6302 1.4096 -3.2709 38 1 6.0044 2.0479 -2.3365 39 1 6.4700 -2.0245 -0.3936 40 1 5.6108 -2.5375 -1.8828 41 1 4.1069 -5.5618 -0.1072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -111.923997 kcal Electronic energy + Delta-G solvation = -21687.562369 eV Core-core repulsion = 18566.005301 eV Total energy + Delta-G solvation = -3121.557068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.43673 -40.10701 -38.29221 -36.84140 -34.87411 -33.15736 -31.80297 -31.09496 -29.26587 -26.47273 -24.59937 -23.70518 -23.16811 -21.14827 -21.05124 -20.62278 -19.14241 -18.94167 -17.71599 -17.31182 -16.62480 -16.23321 -15.78074 -15.18938 -15.04027 -14.95433 -14.68950 -14.46556 -14.18495 -14.09821 -13.55718 -13.24929 -13.22336 -12.91519 -12.79290 -12.54095 -12.41223 -12.32990 -12.10106 -11.95011 -11.77991 -11.72528 -11.48158 -11.25269 -11.24397 -10.80202 -10.72416 -10.68386 -9.14923 -8.27493 -5.56303 1.26869 1.35813 1.38646 1.49416 2.21503 2.37192 2.95254 3.19820 3.58053 3.72420 3.76411 3.98915 4.09413 4.16441 4.30934 4.45293 4.48218 4.53908 4.57990 4.65511 4.70592 4.74419 4.76410 4.86248 4.88247 4.94259 5.08086 5.11533 5.24632 5.26476 5.33835 5.38079 5.45643 5.48438 5.56201 5.64080 5.69583 5.72291 6.04166 6.65031 7.16728 7.43147 7.99215 8.93006 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.008036 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.605259 B = 3483.365446 C = 4894.405455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.028 4.028 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.036 0.964 9 N -0.595 5.595 10 C 0.119 3.881 11 C -0.087 4.087 12 H 0.089 0.911 13 C -0.068 4.068 14 C -0.109 4.109 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.092 4.092 20 C 0.156 3.844 21 H 0.092 0.908 22 C 0.457 3.543 23 O -0.549 6.549 24 O -0.512 6.512 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.703 0.505 -5.629 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.224 4.224 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.170 1.170 7 C -0.371 4.371 8 H 0.054 0.946 9 N -0.320 5.320 10 C -0.005 4.005 11 C -0.106 4.106 12 H 0.108 0.892 13 C -0.087 4.087 14 C -0.146 4.146 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.130 4.130 20 C 0.047 3.953 21 H 0.109 0.891 22 C 0.298 3.702 23 O -0.438 6.438 24 O -0.325 6.325 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 21.365 0.923 -5.687 22.129 hybrid contribution -1.456 -0.097 -0.072 1.461 sum 19.909 0.826 -5.759 20.742 Atomic orbital electron populations 1.70065 1.07781 1.27712 1.53470 1.25796 0.95699 1.01364 0.99529 0.85757 0.79690 0.79357 0.77426 1.20355 1.23382 1.16986 1.18278 0.89217 0.93890 1.35719 0.94582 1.44564 1.10868 1.34609 1.41933 1.22123 0.94406 0.93134 0.90821 1.22521 0.92300 0.96634 0.99183 0.89249 1.21060 0.96252 0.96635 0.94722 1.21568 0.92224 1.02571 0.98240 1.21529 1.00319 0.96506 0.97087 1.21531 0.94777 0.97482 1.01598 1.21515 0.96150 1.01270 0.96504 1.21651 0.99166 0.96804 0.98471 1.22646 0.95016 0.95769 0.99578 1.21003 0.90432 0.82625 1.01277 0.89091 1.25511 0.79313 0.89325 0.76045 1.90677 1.29846 1.86782 1.36502 1.84543 1.61209 1.18960 1.67747 0.92579 0.96291 0.94744 0.91630 0.91329 0.90561 0.92252 0.90608 0.91227 0.91799 0.92320 0.91940 0.94306 0.91765 0.85714 0.90545 0.72458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.77 13.97 21.65 0.30 -61.46 16 2 C -0.03 -1.70 5.39 84.86 0.46 -1.24 16 3 Si 0.95 46.88 24.93 68.60 1.71 48.59 16 4 H -0.28 -13.11 6.76 99.48 0.67 -12.44 16 5 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.25 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.24 -14.66 9.75 84.03 0.82 -13.84 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 9 N -0.60 -29.30 2.50 -672.41 -1.68 -30.98 16 10 C 0.12 5.07 4.75 86.86 0.41 5.48 16 11 C -0.09 -2.61 2.57 -9.26 -0.02 -2.63 16 12 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 13 C -0.07 -1.63 1.70 -10.79 -0.02 -1.64 16 14 C -0.11 -1.88 5.05 30.59 0.15 -1.73 16 15 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 16 C -0.12 -1.84 5.92 30.59 0.18 -1.65 16 17 C -0.12 -2.33 5.92 30.59 0.18 -2.15 16 18 C -0.12 -3.08 5.00 30.59 0.15 -2.93 16 19 C -0.09 -2.54 5.13 31.92 0.16 -2.37 16 20 C 0.16 6.00 3.62 44.59 0.16 6.16 16 21 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 22 C 0.46 18.23 7.23 71.24 0.52 18.75 16 23 O -0.55 -27.50 16.92 21.95 0.37 -27.13 16 24 O -0.51 -14.96 13.42 -51.44 -0.69 -15.65 16 25 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 26 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 27 H 0.03 1.58 2.76 -2.39 -0.01 1.57 16 28 H 0.07 1.67 8.12 -2.38 -0.02 1.65 16 29 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.08 1.16 7.51 -2.39 -0.02 1.14 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.17 7.27 -2.39 -0.02 1.15 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.04 7.73 -2.39 -0.02 2.02 16 41 H 0.42 8.57 9.10 -74.06 -0.67 7.90 16 Total: -1.00 -77.85 317.12 3.66 -74.19 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.30 Total: 13.82 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 3.34 Total: -1.37 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -1.38 Total: -92.45 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.32 Total: -42.78 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.71 Total: 48.59 kcal Total: -77.85 3.66 -74.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.730 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds