Wall clock time and date at job start Mon Mar 30 2020 00:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99658 * 90.00442 * 6 5 4 8 8 C 1.50701 * 109.47310 * 89.99973 * 7 6 5 9 9 H 1.07997 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99877 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46889 * 90.00336 * 12 10 8 14 14 H 1.48502 * 109.47240 * 209.99902 * 12 10 8 15 15 H 1.48500 * 109.47486 * 330.00239 * 12 10 8 16 16 C 1.39152 * 120.00478 * 270.00274 * 6 5 4 17 17 C 1.39211 * 120.05683 * 4.72353 * 16 6 5 18 18 N 1.32008 * 119.93084 * 179.70882 * 17 16 6 19 19 C 1.32410 * 120.05454 * 0.56590 * 18 17 16 20 20 F 1.35101 * 119.93822 * 179.72784 * 19 18 17 21 21 C 1.38468 * 120.11785 * 359.71486 * 19 18 17 22 22 N 1.32206 * 120.07615 * 359.97438 * 21 19 18 23 23 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 24 24 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 25 25 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 27 27 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 29 29 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 30 30 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 31 31 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 34 34 H 1.08998 * 109.46888 * 209.99779 * 7 6 5 35 35 H 1.08994 * 109.47490 * 329.99842 * 7 6 5 36 36 H 0.97000 * 119.99433 * 179.97438 * 11 10 8 37 37 H 1.08004 * 120.03733 * 0.02562 * 17 16 6 38 38 H 1.08002 * 119.96325 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.2828 -2.9586 3.5819 8 6 0.4286 -4.1987 3.5220 9 1 0.5039 -4.8659 2.6761 10 6 -0.4490 -4.4815 4.5472 11 7 -0.5403 -3.6693 5.5775 12 14 -1.5082 -6.0183 4.4725 13 1 -0.7868 -7.1482 5.1114 14 1 -2.7842 -5.7756 5.1924 15 1 -1.7958 -6.3530 3.0546 16 6 3.3848 -3.4732 2.3828 17 6 4.2233 -3.3214 1.2820 18 7 5.4219 -3.8746 1.2858 19 6 5.8222 -4.5826 2.3307 20 9 7.0472 -5.1523 2.3298 21 6 4.9877 -4.7398 3.4244 22 7 3.7887 -4.1828 3.4284 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6769 1.9563 0.8901 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6445 1.2950 32 1 0.5489 -2.2724 1.1419 33 1 2.0698 -2.6550 0.3000 34 1 1.9160 -2.9961 4.4683 35 1 0.6421 -2.0782 3.6301 36 1 -1.1580 -3.8681 6.2985 37 1 3.8957 -2.7474 0.4279 38 1 5.3166 -5.3181 4.2751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853452430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:56 Heat of formation + Delta-G solvation = -2.569294 kcal Electronic energy + Delta-G solvation = -20353.032743 eV Core-core repulsion = 17145.050096 eV Total energy + Delta-G solvation = -3207.982647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.49751 -40.51353 -37.54404 -35.52376 -33.65114 -32.77205 -30.04169 -29.20955 -27.14687 -26.54952 -24.62034 -23.68087 -22.97920 -20.81248 -19.87454 -17.73356 -17.61041 -16.83275 -16.42419 -15.77035 -15.28790 -14.85044 -14.62498 -14.21801 -13.99195 -13.74526 -13.51655 -13.16066 -12.88453 -12.61563 -12.46797 -12.17093 -11.85635 -11.49496 -11.31441 -11.07073 -11.00252 -10.92343 -10.79054 -10.61420 -10.57132 -10.40975 -10.19197 -9.88018 -9.17977 -8.66594 -8.50602 -7.00991 -6.10081 -4.16947 1.24931 1.61220 3.25736 3.32319 3.33180 3.44498 3.95962 4.10071 4.37134 4.69261 4.80079 4.88721 4.95439 4.99172 5.21906 5.29044 5.34998 5.53976 5.57695 5.65847 5.69350 5.73131 5.78579 5.87539 5.96870 6.09186 6.12731 6.23550 6.43210 6.48976 6.66677 6.84462 7.28206 7.52058 7.64721 7.83630 8.03474 8.13121 8.39993 8.86776 9.47954 10.95593 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.008224 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.532605 B = 3403.870808 C = 5854.410209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.135 4.135 5 C 0.120 3.880 6 N -0.569 5.569 7 C 0.252 3.748 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.064 3.936 11 N -0.893 5.893 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.365 3.635 17 C -0.001 4.001 18 N -0.434 5.434 19 C 0.144 3.856 20 F -0.122 7.122 21 C 0.105 3.895 22 N -0.459 5.459 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.167 0.833 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 5.819 -8.967 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.174 4.174 5 C -0.004 4.004 6 N -0.274 5.274 7 C 0.133 3.867 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.138 4.138 11 N -0.532 5.532 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.125 3.875 17 C -0.172 4.172 18 N -0.152 5.152 19 C -0.013 4.013 20 F -0.102 7.102 21 C -0.061 4.061 22 N -0.180 5.180 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.076 5.932 -8.747 11.725 hybrid contribution -0.374 -1.037 0.081 1.105 sum 4.702 4.895 -8.666 11.007 Atomic orbital electron populations 1.21916 0.95065 1.02317 1.01558 1.21055 0.96098 0.96022 0.98056 1.21827 1.00811 0.96126 1.01565 1.22141 1.01100 0.95766 0.98425 1.21616 1.00966 0.91010 0.86788 1.47320 1.11921 1.52226 1.15942 1.19392 0.89063 0.97065 0.81199 1.21390 1.21270 1.07896 1.05815 0.92560 1.24896 0.97047 0.96797 0.95100 1.69923 1.37355 1.36937 1.09017 0.86534 0.79688 0.83314 0.78099 1.20545 1.21137 1.20001 1.19484 0.88025 0.89856 0.90177 1.22778 0.89500 1.05128 0.99759 1.67395 1.16022 1.05967 1.25792 1.18681 0.84454 1.03177 0.95027 1.91539 1.39796 1.82330 1.96550 1.23329 0.88848 0.96813 0.97147 1.68321 1.13719 1.09710 1.26237 0.92471 0.93108 0.92041 0.91251 0.92848 0.92938 0.92687 0.91076 0.91951 0.89067 0.91503 0.93493 0.94854 0.92673 0.81629 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 2 C -0.09 -0.98 2.92 -90.62 -0.26 -1.25 16 3 C -0.15 -1.40 9.19 37.15 0.34 -1.06 16 4 C -0.14 -1.75 4.99 -26.73 -0.13 -1.88 16 5 C 0.12 1.81 4.80 -4.04 -0.02 1.79 16 6 N -0.57 -11.09 2.58 -175.06 -0.45 -11.54 16 7 C 0.25 6.05 5.15 -5.19 -0.03 6.02 16 8 C -0.52 -13.95 9.39 -34.44 -0.32 -14.28 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 12 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.37 7.06 7.37 -154.63 -1.14 5.92 16 17 C 0.00 -0.01 10.32 -17.11 -0.18 -0.19 16 18 N -0.43 -7.70 10.50 -13.24 -0.14 -7.84 16 19 C 0.14 2.50 8.43 -17.22 -0.15 2.35 16 20 F -0.12 -2.00 17.29 2.25 0.04 -1.96 16 21 C 0.10 1.80 11.20 -17.31 -0.19 1.61 16 22 N -0.46 -9.42 9.34 -12.17 -0.11 -9.53 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 26 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.09 1.44 6.49 -51.93 -0.34 1.11 16 33 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 34 H 0.05 1.25 7.47 -51.93 -0.39 0.87 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.17 2.29 6.26 -52.48 -0.33 1.97 16 38 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -29.32 322.55 -7.43 -36.74 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.49 Total: -1.66 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.84 Total: -0.59 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.03 Total: -53.49 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.32 -7.43 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853452430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.174 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds