Wall clock time and date at job start Mon Mar 30 2020 00:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99658 * 90.00442 * 6 5 4 8 8 C 1.50701 * 109.47310 * 89.99973 * 7 6 5 9 9 H 1.07997 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99877 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46889 * 90.00336 * 12 10 8 14 14 H 1.48502 * 109.47240 * 209.99902 * 12 10 8 15 15 H 1.48500 * 109.47486 * 330.00239 * 12 10 8 16 16 C 1.39152 * 120.00478 * 270.00274 * 6 5 4 17 17 C 1.39211 * 120.05683 * 4.72353 * 16 6 5 18 18 N 1.32008 * 119.93084 * 179.70882 * 17 16 6 19 19 C 1.32410 * 120.05454 * 0.56590 * 18 17 16 20 20 F 1.35101 * 119.93822 * 179.72784 * 19 18 17 21 21 C 1.38468 * 120.11785 * 359.71486 * 19 18 17 22 22 N 1.32206 * 120.07615 * 359.97438 * 21 19 18 23 23 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 24 24 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 25 25 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 27 27 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 29 29 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 30 30 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 31 31 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 34 34 H 1.08998 * 109.46888 * 209.99779 * 7 6 5 35 35 H 1.08994 * 109.47490 * 329.99842 * 7 6 5 36 36 H 0.97000 * 119.99433 * 179.97438 * 11 10 8 37 37 H 1.08004 * 120.03733 * 0.02562 * 17 16 6 38 38 H 1.08002 * 119.96325 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.2828 -2.9586 3.5819 8 6 0.4286 -4.1987 3.5220 9 1 0.5039 -4.8659 2.6761 10 6 -0.4490 -4.4815 4.5472 11 7 -0.5403 -3.6693 5.5775 12 14 -1.5082 -6.0183 4.4725 13 1 -0.7868 -7.1482 5.1114 14 1 -2.7842 -5.7756 5.1924 15 1 -1.7958 -6.3530 3.0546 16 6 3.3848 -3.4732 2.3828 17 6 4.2233 -3.3214 1.2820 18 7 5.4219 -3.8746 1.2858 19 6 5.8222 -4.5826 2.3307 20 9 7.0472 -5.1523 2.3298 21 6 4.9877 -4.7398 3.4244 22 7 3.7887 -4.1828 3.4284 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6769 1.9563 0.8901 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6445 1.2950 32 1 0.5489 -2.2724 1.1419 33 1 2.0698 -2.6550 0.3000 34 1 1.9160 -2.9961 4.4683 35 1 0.6421 -2.0782 3.6301 36 1 -1.1580 -3.8681 6.2985 37 1 3.8957 -2.7474 0.4279 38 1 5.3166 -5.3181 4.2751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853452430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:56 Heat of formation + Delta-G solvation = -18.563560 kcal Electronic energy + Delta-G solvation = -20353.726306 eV Core-core repulsion = 17145.050096 eV Total energy + Delta-G solvation = -3208.676210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.84730 -41.93320 -38.78361 -36.75050 -35.07806 -34.73772 -31.40008 -30.72429 -28.20930 -27.92658 -26.11607 -25.10431 -24.51641 -22.27478 -20.80945 -19.17906 -18.97002 -18.61387 -18.10245 -17.16329 -16.66718 -16.34181 -15.88025 -15.50247 -15.35920 -15.05886 -14.64807 -14.50885 -14.33440 -14.21520 -13.62596 -13.34691 -13.18620 -12.95036 -12.72131 -12.68641 -12.39910 -12.34072 -12.25555 -12.10394 -11.87372 -11.56710 -11.48641 -11.37512 -10.75433 -10.60318 -10.08791 -8.58134 -8.09952 -6.31361 -0.11876 0.17734 1.38373 1.40127 1.49131 2.00039 2.40269 2.59021 2.70197 3.11908 3.35414 3.42626 3.83779 3.94429 4.01975 4.13532 4.15866 4.31083 4.46165 4.54633 4.72108 4.83721 4.87436 4.93882 5.03110 5.09871 5.17217 5.18438 5.25466 5.36561 5.39920 5.52818 5.58247 5.68390 5.96764 6.09316 6.17862 6.50124 6.77706 6.99285 7.37861 8.87692 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.008224 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.532605 B = 3403.870808 C = 5854.410209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.125 4.125 5 C 0.117 3.883 6 N -0.577 5.577 7 C 0.273 3.727 8 C -0.531 4.531 9 H 0.049 0.951 10 C 0.015 3.985 11 N -0.926 5.926 12 Si 0.957 3.043 13 H -0.280 1.280 14 H -0.279 1.279 15 H -0.268 1.268 16 C 0.349 3.651 17 C 0.018 3.982 18 N -0.443 5.443 19 C 0.148 3.852 20 F -0.115 7.115 21 C 0.104 3.896 22 N -0.502 5.502 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.014 0.986 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.199 0.801 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 5.581 -10.817 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.164 4.164 5 C -0.005 4.005 6 N -0.284 5.284 7 C 0.152 3.848 8 C -0.570 4.570 9 H 0.067 0.933 10 C -0.184 4.184 11 N -0.566 5.566 12 Si 0.782 3.218 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.192 1.192 16 C 0.108 3.892 17 C -0.152 4.152 18 N -0.161 5.161 19 C -0.010 4.010 20 F -0.095 7.095 21 C -0.060 4.060 22 N -0.224 5.224 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.216 0.784 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.586 5.692 -10.627 13.286 hybrid contribution -0.434 -0.962 0.649 1.239 sum 5.152 4.730 -9.978 12.185 Atomic orbital electron populations 1.21919 0.95353 1.01845 1.01787 1.21045 0.95798 0.96563 0.97249 1.21812 1.01097 0.95351 1.01908 1.22042 1.01142 0.94333 0.98886 1.21842 1.00539 0.92125 0.85966 1.47181 1.11911 1.53457 1.15856 1.18774 0.88353 0.95448 0.82216 1.21628 1.21493 1.08476 1.05411 0.93311 1.25675 0.98347 0.99581 0.94825 1.70030 1.38210 1.38614 1.09702 0.85575 0.78166 0.79658 0.78357 1.20575 1.20426 1.19220 1.19755 0.88224 0.90218 0.90963 1.23115 0.88478 1.04122 0.99530 1.67489 1.16253 1.06378 1.25982 1.18758 0.84568 1.02697 0.94930 1.91558 1.39306 1.82143 1.96509 1.23677 0.87867 0.96459 0.98043 1.68272 1.15446 1.11032 1.27628 0.93771 0.91367 0.92875 0.89404 0.92385 0.91449 0.93540 0.93381 0.91548 0.90184 0.88821 0.96835 0.96411 0.92563 0.78443 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.95 71.98 0.64 -2.41 16 2 C -0.09 -1.66 2.92 -10.80 -0.03 -1.70 16 3 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 4 C -0.13 -3.12 4.99 30.59 0.15 -2.96 16 5 C 0.12 3.45 4.80 86.38 0.41 3.86 16 6 N -0.58 -22.62 2.58 -707.77 -1.82 -24.44 16 7 C 0.27 13.58 5.15 85.63 0.44 14.02 16 8 C -0.53 -28.73 9.39 25.60 0.24 -28.49 16 9 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 10 C 0.01 0.82 5.46 84.65 0.46 1.28 16 11 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 12 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 C 0.35 13.27 7.37 132.95 0.98 14.25 16 17 C 0.02 0.57 10.32 84.90 0.88 1.45 16 18 N -0.44 -14.75 10.50 -195.80 -2.06 -16.81 16 19 C 0.15 4.86 8.43 84.66 0.71 5.58 16 20 F -0.12 -3.55 17.29 44.97 0.78 -2.77 16 21 C 0.10 3.49 11.20 84.69 0.95 4.44 16 22 N -0.50 -20.62 9.34 -192.40 -1.80 -22.42 16 23 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.15 6.57 -2.39 -0.02 1.13 16 26 H 0.09 1.39 8.14 -2.38 -0.02 1.38 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.08 2.53 6.49 -2.39 -0.02 2.51 16 33 H 0.09 2.22 6.40 -2.39 -0.02 2.21 16 34 H 0.01 0.76 7.47 -2.39 -0.02 0.74 16 35 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.20 4.78 6.26 -2.91 -0.02 4.77 16 38 H 0.20 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -63.19 322.55 4.96 -58.22 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.05 Total: 8.46 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.50 Total: 7.52 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -5.39 Total: -116.90 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.19 4.96 -58.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853452430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.660 kcal (2) G-P(sol) polarization free energy of solvation -63.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds