Wall clock time and date at job start Mon Mar 30 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99896 * 2 1 4 4 H 1.48507 * 109.46961 * 239.99667 * 3 2 1 5 5 H 1.48501 * 109.47526 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47346 * 119.99996 * 3 2 1 7 7 C 1.37876 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99400 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00449 * 0.27117 * 7 2 1 10 10 C 1.52993 * 109.47066 * 179.72870 * 9 7 2 11 11 C 1.50702 * 109.46843 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00130 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99948 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00338 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.05116 * 352.50716 * 14 13 11 16 16 C 1.54398 * 110.07059 * 230.96593 * 14 13 11 17 17 C 1.54941 * 104.20477 * 217.21137 * 16 14 13 18 18 C 1.54995 * 102.80705 * 37.67436 * 17 16 14 19 19 C 1.53384 * 110.07092 * 113.98291 * 14 13 11 20 20 C 1.53900 * 110.16222 * 359.84603 * 19 14 13 21 21 C 1.55422 * 102.09163 * 217.60837 * 20 19 14 22 22 C 1.54986 * 100.99553 * 33.73274 * 21 20 19 23 23 O 1.42681 * 110.87155 * 240.14996 * 19 14 13 24 24 H 0.96995 * 119.99993 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47164 * 299.73219 * 9 7 2 26 26 H 1.09002 * 109.46681 * 59.72951 * 9 7 2 27 27 H 1.09008 * 109.47145 * 300.00073 * 10 9 7 28 28 H 1.09002 * 109.47304 * 60.00463 * 10 9 7 29 29 H 0.97005 * 119.99878 * 359.97438 * 13 11 10 30 30 H 1.08993 * 110.48539 * 335.89200 * 16 14 13 31 31 H 1.09002 * 110.48292 * 98.53127 * 16 14 13 32 32 H 1.08997 * 110.74301 * 279.34512 * 17 16 14 33 33 H 1.09002 * 110.74215 * 156.00947 * 17 16 14 34 34 H 1.09006 * 110.50767 * 203.82114 * 18 17 16 35 35 H 1.09002 * 110.62421 * 81.18384 * 18 17 16 36 36 H 1.09001 * 110.91116 * 335.80746 * 20 19 14 37 37 H 1.09008 * 110.90541 * 99.41002 * 20 19 14 38 38 H 1.09004 * 111.11677 * 275.79785 * 21 20 19 39 39 H 1.09004 * 111.14811 * 151.68101 * 21 20 19 40 40 H 1.08998 * 110.30453 * 204.91428 * 22 21 20 41 41 H 1.09005 * 110.30818 * 82.75900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0073 10 6 2.2452 -3.6620 -0.0133 11 6 1.4917 -4.9671 -0.0207 12 8 0.2789 -4.9671 -0.0207 13 7 2.1656 -6.1343 -0.0274 14 6 1.4332 -7.4030 -0.0340 15 1 0.3672 -7.2199 0.1010 16 6 1.9597 -8.3247 1.0872 17 6 1.9145 -9.7433 0.4659 18 6 2.3364 -9.4885 -1.0036 19 6 1.6766 -8.1445 -1.3545 20 6 2.6104 -7.3222 -2.2602 21 6 2.0078 -7.5805 -3.6694 22 6 0.4998 -7.6936 -3.3298 23 8 0.4504 -8.3541 -2.0533 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5615 0.8823 26 1 0.6244 -2.5523 -0.8976 27 1 2.8719 -3.5997 -0.9030 28 1 2.8719 -3.6090 0.8770 29 1 3.1356 -6.1343 -0.0278 30 1 2.9825 -8.0569 1.3523 31 1 1.3113 -8.2703 1.9617 32 1 0.9055 -10.1531 0.5124 33 1 2.6243 -10.4050 0.9623 34 1 1.9595 -10.2797 -1.6518 35 1 3.4208 -9.4142 -1.0843 36 1 2.5655 -6.2632 -2.0062 37 1 3.6342 -7.6919 -2.2012 38 1 2.3856 -8.5109 -4.0935 39 1 2.1978 -6.7411 -4.3383 40 1 -0.0142 -8.2893 -4.0841 41 1 0.0523 -6.7020 -3.2602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882596229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:58 Heat of formation + Delta-G solvation = -97.716343 kcal Electronic energy + Delta-G solvation = -21128.011169 eV Core-core repulsion = 18007.070191 eV Total energy + Delta-G solvation = -3120.940978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75039 -38.71275 -36.40942 -33.48734 -33.43570 -32.09215 -30.97138 -29.14763 -27.86038 -25.51002 -24.24076 -22.07496 -21.68477 -21.08898 -19.63810 -19.45838 -17.06706 -16.54154 -16.19191 -15.86116 -15.39184 -15.14010 -14.76957 -14.43944 -14.12765 -13.70913 -13.36642 -13.08254 -12.81199 -12.39925 -12.16214 -12.00612 -11.79071 -11.64943 -11.24858 -11.17769 -11.15610 -10.91288 -10.88388 -10.66424 -10.60624 -10.57614 -9.95362 -9.71553 -9.65260 -9.17199 -8.99338 -8.62915 -8.31337 -5.95570 -4.00256 3.22825 3.34308 3.36614 3.39596 3.41848 3.94377 4.31395 4.38607 4.48014 4.68452 4.75115 4.86987 4.96300 5.18928 5.27506 5.39173 5.40488 5.45392 5.52308 5.60400 5.62770 5.69026 5.72211 5.77061 5.81102 5.84722 5.98100 6.04604 6.10197 6.21782 6.22706 6.27457 6.74128 6.89129 7.12719 7.74226 7.86508 7.89088 8.07663 8.38929 8.79548 9.08267 9.63239 11.15327 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.004169 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.306591 B = 6713.937642 C = 7050.810887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.530 6.530 13 N -0.734 5.734 14 C 0.127 3.873 15 H 0.111 0.889 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.124 4.124 19 C 0.093 3.907 20 C -0.152 4.152 21 C -0.155 4.155 22 C 0.049 3.951 23 O -0.366 6.366 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.397 0.603 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 -20.111 -3.605 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.404 6.404 13 N -0.387 5.387 14 C 0.021 3.979 15 H 0.129 0.871 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.162 4.162 19 C 0.052 3.948 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.027 4.027 23 O -0.285 6.285 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.710 -20.065 -3.521 21.448 hybrid contribution 1.098 1.052 -0.151 1.528 sum 7.808 -19.013 -3.672 20.879 Atomic orbital electron populations 1.69990 1.06056 1.26696 1.50061 1.25020 0.94814 0.99196 0.95291 0.86655 0.79547 0.83210 0.78526 1.20276 1.21275 1.20249 1.21181 0.92861 0.91037 1.51566 0.92691 1.18887 0.93155 0.89350 0.98613 1.21878 1.00712 0.92002 1.02416 1.21625 0.88775 0.85730 0.74246 1.90676 1.14454 1.87407 1.47866 1.46347 1.09791 1.05408 1.77176 1.21783 0.99800 0.83327 0.92955 0.87115 1.22691 1.01668 0.94551 0.97908 1.22461 1.01855 0.96476 0.95130 1.22629 0.99780 0.96575 0.97174 1.22650 0.84773 0.94545 0.92790 1.23361 0.99030 1.02775 0.93810 1.23255 0.95829 1.02508 0.97692 1.23426 0.96093 0.97927 0.85275 1.88373 1.35925 1.74131 1.30033 0.92889 0.95830 0.95869 0.90368 0.90217 0.76881 0.90984 0.90868 0.90994 0.91308 0.90738 0.90672 0.88803 0.90203 0.90812 0.89980 0.90005 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.62 5.64 -27.89 -0.16 -2.77 16 11 C 0.51 9.73 7.51 -10.98 -0.08 9.65 16 12 O -0.53 -12.67 15.35 5.56 0.09 -12.59 16 13 N -0.73 -10.23 2.86 -52.90 -0.15 -10.38 16 14 C 0.13 1.73 3.39 -67.00 -0.23 1.50 16 15 H 0.11 1.92 6.82 -51.93 -0.35 1.57 16 16 C -0.13 -1.36 6.55 -24.97 -0.16 -1.52 16 17 C -0.12 -1.10 6.91 -24.65 -0.17 -1.27 16 18 C -0.12 -1.16 6.12 -25.27 -0.15 -1.32 16 19 C 0.09 1.13 1.17 -89.55 -0.10 1.02 16 20 C -0.15 -1.65 5.50 -24.98 -0.14 -1.79 16 21 C -0.16 -1.59 7.16 -24.40 -0.17 -1.77 16 22 C 0.05 0.61 7.79 38.21 0.30 0.91 16 23 O -0.37 -5.25 10.61 -35.23 -0.37 -5.62 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.40 4.28 8.32 -40.82 -0.34 3.94 16 30 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.07 0.58 7.37 -51.93 -0.38 0.20 16 36 H 0.09 1.18 5.79 -51.93 -0.30 0.88 16 37 H 0.08 0.69 7.34 -51.92 -0.38 0.31 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -34.06 326.79 -8.19 -42.25 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.78 Total: 1.73 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.60 Total: -10.16 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.59 Total: -37.17 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.29 Total: -18.21 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.06 -8.19 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882596229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.471 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds