Wall clock time and date at job start Mon Mar 30 2020 01:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99896 * 2 1 4 4 H 1.48507 * 109.46961 * 239.99667 * 3 2 1 5 5 H 1.48501 * 109.47526 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47346 * 119.99996 * 3 2 1 7 7 C 1.37876 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99400 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00449 * 0.27117 * 7 2 1 10 10 C 1.52993 * 109.47066 * 179.72870 * 9 7 2 11 11 C 1.50702 * 109.46843 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00130 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99948 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00338 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.05116 * 352.50716 * 14 13 11 16 16 C 1.54398 * 110.07059 * 230.96593 * 14 13 11 17 17 C 1.54941 * 104.20477 * 217.21137 * 16 14 13 18 18 C 1.54995 * 102.80705 * 37.67436 * 17 16 14 19 19 C 1.53384 * 110.07092 * 113.98291 * 14 13 11 20 20 C 1.53900 * 110.16222 * 359.84603 * 19 14 13 21 21 C 1.55422 * 102.09163 * 217.60837 * 20 19 14 22 22 C 1.54986 * 100.99553 * 33.73274 * 21 20 19 23 23 O 1.42681 * 110.87155 * 240.14996 * 19 14 13 24 24 H 0.96995 * 119.99993 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47164 * 299.73219 * 9 7 2 26 26 H 1.09002 * 109.46681 * 59.72951 * 9 7 2 27 27 H 1.09008 * 109.47145 * 300.00073 * 10 9 7 28 28 H 1.09002 * 109.47304 * 60.00463 * 10 9 7 29 29 H 0.97005 * 119.99878 * 359.97438 * 13 11 10 30 30 H 1.08993 * 110.48539 * 335.89200 * 16 14 13 31 31 H 1.09002 * 110.48292 * 98.53127 * 16 14 13 32 32 H 1.08997 * 110.74301 * 279.34512 * 17 16 14 33 33 H 1.09002 * 110.74215 * 156.00947 * 17 16 14 34 34 H 1.09006 * 110.50767 * 203.82114 * 18 17 16 35 35 H 1.09002 * 110.62421 * 81.18384 * 18 17 16 36 36 H 1.09001 * 110.91116 * 335.80746 * 20 19 14 37 37 H 1.09008 * 110.90541 * 99.41002 * 20 19 14 38 38 H 1.09004 * 111.11677 * 275.79785 * 21 20 19 39 39 H 1.09004 * 111.14811 * 151.68101 * 21 20 19 40 40 H 1.08998 * 110.30453 * 204.91428 * 22 21 20 41 41 H 1.09005 * 110.30818 * 82.75900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0073 10 6 2.2452 -3.6620 -0.0133 11 6 1.4917 -4.9671 -0.0207 12 8 0.2789 -4.9671 -0.0207 13 7 2.1656 -6.1343 -0.0274 14 6 1.4332 -7.4030 -0.0340 15 1 0.3672 -7.2199 0.1010 16 6 1.9597 -8.3247 1.0872 17 6 1.9145 -9.7433 0.4659 18 6 2.3364 -9.4885 -1.0036 19 6 1.6766 -8.1445 -1.3545 20 6 2.6104 -7.3222 -2.2602 21 6 2.0078 -7.5805 -3.6694 22 6 0.4998 -7.6936 -3.3298 23 8 0.4504 -8.3541 -2.0533 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5615 0.8823 26 1 0.6244 -2.5523 -0.8976 27 1 2.8719 -3.5997 -0.9030 28 1 2.8719 -3.6090 0.8770 29 1 3.1356 -6.1343 -0.0278 30 1 2.9825 -8.0569 1.3523 31 1 1.3113 -8.2703 1.9617 32 1 0.9055 -10.1531 0.5124 33 1 2.6243 -10.4050 0.9623 34 1 1.9595 -10.2797 -1.6518 35 1 3.4208 -9.4142 -1.0843 36 1 2.5655 -6.2632 -2.0062 37 1 3.6342 -7.6919 -2.2012 38 1 2.3856 -8.5109 -4.0935 39 1 2.1978 -6.7411 -4.3383 40 1 -0.0142 -8.2893 -4.0841 41 1 0.0523 -6.7020 -3.2602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882596229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:57 Heat of formation + Delta-G solvation = -120.868652 kcal Electronic energy + Delta-G solvation = -21129.015129 eV Core-core repulsion = 18007.070191 eV Total energy + Delta-G solvation = -3121.944938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82101 -40.15563 -37.45532 -35.57267 -34.72707 -33.04636 -32.93788 -30.02899 -29.12284 -27.30440 -25.26191 -23.67701 -22.88790 -21.93235 -21.17959 -20.51079 -18.86999 -17.81775 -17.51111 -17.03429 -16.66318 -16.49220 -16.24178 -16.16010 -15.18033 -14.70047 -14.59275 -14.52631 -14.20147 -13.90736 -13.58096 -13.25346 -13.00866 -12.77786 -12.70918 -12.61937 -12.47362 -12.07549 -12.02863 -11.92639 -11.69023 -11.67821 -11.56277 -11.38330 -11.32102 -10.86205 -10.64191 -10.56314 -9.84805 -8.18077 -6.32772 1.41969 1.46688 1.54470 1.68790 2.15395 2.43846 2.93469 3.14862 3.43747 3.49659 3.80394 3.89883 4.01583 4.06887 4.16700 4.30988 4.38299 4.47678 4.53606 4.55980 4.65433 4.71525 4.76486 4.84930 4.87307 4.92261 4.98898 5.01673 5.09661 5.16883 5.21438 5.29090 5.39564 5.47607 5.55129 5.61412 5.84544 6.15903 6.16672 6.60719 6.85751 7.35760 7.38186 8.94548 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.004169 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.306591 B = 6713.937642 C = 7050.810887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.509 3.491 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.120 3.880 15 H 0.061 0.939 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.085 3.915 20 C -0.153 4.153 21 C -0.146 4.146 22 C 0.040 3.960 23 O -0.393 6.393 24 H 0.262 0.738 25 H -0.021 1.021 26 H -0.021 1.021 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.418 0.582 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 -21.323 -3.897 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.298 3.702 12 O -0.470 6.470 13 N -0.357 5.357 14 C 0.014 3.986 15 H 0.079 0.921 16 C -0.162 4.162 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.045 3.955 20 C -0.190 4.190 21 C -0.184 4.184 22 C -0.036 4.036 23 O -0.313 6.313 24 H 0.071 0.929 25 H -0.002 1.002 26 H -0.003 1.003 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.257 0.743 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.944 -21.329 -3.813 24.274 hybrid contribution -0.273 1.375 -0.059 1.403 sum 10.671 -19.954 -3.872 22.957 Atomic orbital electron populations 1.70186 1.08424 1.27872 1.51437 1.26160 0.95687 1.04030 0.94571 0.85357 0.78026 0.77216 0.79539 1.18581 1.21440 1.18599 1.21685 0.94032 0.91502 1.50899 0.90408 1.18675 0.93711 0.92659 0.94468 1.21643 0.99229 0.89862 1.04982 1.21440 0.87856 0.86977 0.73906 1.90666 1.17039 1.88229 1.51115 1.45981 1.10704 1.04199 1.74822 1.21934 0.97241 0.83440 0.95993 0.92060 1.22679 1.02535 0.94721 0.96259 1.22462 1.02064 0.95645 0.95228 1.22632 1.01130 0.94444 0.96979 1.22874 0.84544 0.96382 0.91720 1.23398 1.00629 1.01305 0.93689 1.23252 0.93566 1.03969 0.97606 1.23526 0.98313 0.96491 0.85289 1.88353 1.37775 1.74154 1.30997 0.92890 1.00234 1.00254 0.87584 0.87523 0.74309 0.88484 0.91842 0.92331 0.88386 0.90499 0.87684 0.91034 0.86657 0.88271 0.89535 0.88178 0.95215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.29 21.45 0.28 -60.08 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 3 Si 0.98 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.41 4.26 29.85 0.13 2.53 16 10 C -0.12 -4.71 5.64 29.85 0.17 -4.55 16 11 C 0.51 20.17 7.51 87.66 0.66 20.83 16 12 O -0.59 -30.60 15.35 -3.03 -0.05 -30.64 16 13 N -0.70 -19.13 2.86 -439.67 -1.26 -20.39 16 14 C 0.12 3.24 3.39 45.60 0.15 3.40 16 15 H 0.06 2.31 6.82 -2.38 -0.02 2.29 16 16 C -0.12 -2.36 6.55 31.73 0.21 -2.15 16 17 C -0.12 -1.78 6.91 31.94 0.22 -1.56 16 18 C -0.11 -1.74 6.12 31.54 0.19 -1.55 16 19 C 0.09 1.95 1.17 -10.10 -0.01 1.93 16 20 C -0.15 -2.93 5.50 31.73 0.17 -2.76 16 21 C -0.15 -2.72 7.16 32.11 0.23 -2.49 16 22 C 0.04 1.01 7.79 72.66 0.57 1.58 16 23 O -0.39 -11.51 10.61 -148.98 -1.58 -13.09 16 24 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 25 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 26 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 27 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 28 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.42 7.81 8.32 -92.70 -0.77 7.04 16 30 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.19 8.07 -2.38 -0.02 1.17 16 35 H 0.10 1.02 7.37 -2.39 -0.02 1.01 16 36 H 0.07 1.69 5.79 -2.39 -0.01 1.68 16 37 H 0.12 1.40 7.34 -2.38 -0.02 1.39 16 38 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.03 0.92 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -80.99 326.79 3.05 -77.94 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.24 Total: 15.45 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.38 Total: -15.56 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -0.97 Total: -80.47 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.63 Total: -43.74 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -80.99 3.05 -77.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882596229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.929 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds