Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99560 * 2 1 4 4 H 1.48504 * 109.46876 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47498 * 299.99894 * 3 2 1 6 6 H 1.48505 * 109.47471 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99540 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47058 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00378 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99622 * 180.27532 * 11 10 9 14 14 C 1.47156 * 120.98562 * 354.27277 * 13 11 10 15 15 C 1.53717 * 108.16002 * 129.42967 * 14 13 11 16 16 O 1.42954 * 109.14514 * 52.54360 * 15 14 13 17 17 C 1.42966 * 114.16769 * 297.28688 * 16 15 14 18 18 C 1.47150 * 120.98160 * 174.55709 * 13 11 10 19 19 H 1.09002 * 109.68536 * 110.79191 * 18 13 11 20 20 C 1.52998 * 109.68279 * 350.27460 * 18 13 11 21 21 C 1.52999 * 109.47404 * 182.47232 * 20 18 13 22 22 C 1.52997 * 117.50107 * 244.89645 * 21 20 18 23 23 C 1.53001 * 60.00138 * 252.50820 * 22 21 20 24 24 H 0.97005 * 120.00546 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47386 * 60.00363 * 9 7 2 26 26 H 1.09001 * 109.47557 * 299.99782 * 9 7 2 27 27 H 1.09004 * 109.46577 * 60.00049 * 10 9 7 28 28 H 1.09001 * 109.46907 * 300.00362 * 10 9 7 29 29 H 1.08993 * 109.68627 * 249.21164 * 14 13 11 30 30 H 1.09003 * 109.67688 * 9.76898 * 14 13 11 31 31 H 1.09001 * 109.65890 * 292.57347 * 15 14 13 32 32 H 1.09000 * 109.47970 * 172.40232 * 15 14 13 33 33 H 1.09001 * 109.50697 * 302.65453 * 17 16 15 34 34 H 1.09003 * 109.51178 * 182.50864 * 17 16 15 35 35 H 1.09004 * 109.47220 * 302.47276 * 20 18 13 36 36 H 1.09002 * 109.47360 * 62.46839 * 20 18 13 37 37 H 1.09001 * 115.54676 * 30.60609 * 21 20 18 38 38 H 1.09000 * 117.49819 * 0.02562 * 22 21 20 39 39 H 1.08997 * 117.49748 * 145.01613 * 22 21 20 40 40 H 1.08996 * 117.49953 * 252.50591 * 23 22 21 41 41 H 1.09004 * 117.49315 * 107.48492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9672 -0.0010 13 7 2.1658 -6.1343 0.0054 14 6 3.6322 -6.1629 -0.1138 15 6 4.1881 -7.0398 1.0198 16 8 3.5253 -8.3063 1.0008 17 6 2.1178 -8.2340 1.2410 18 6 1.4565 -7.4180 0.1246 19 1 1.5229 -7.9630 -0.8171 20 6 -0.0122 -7.1650 0.4709 21 6 -0.7308 -8.5032 0.6543 22 6 -1.8372 -8.8534 -0.3428 23 6 -2.1962 -8.4640 1.0926 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6042 -0.8894 29 1 3.9140 -6.5836 -1.0790 30 1 4.0276 -5.1511 -0.0243 31 1 4.0146 -6.5524 1.9791 32 1 5.2583 -7.1867 0.8743 33 1 1.9368 -7.7510 2.2013 34 1 1.6986 -9.2401 1.2540 35 1 -0.0738 -6.5899 1.3949 36 1 -0.4850 -6.6063 -0.3368 37 1 -0.1147 -9.3200 1.0304 38 1 -2.0528 -8.1306 -1.1297 39 1 -1.9490 -9.9008 -0.6231 40 1 -2.5443 -9.2551 1.7566 41 1 -2.6483 -7.4847 1.2502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886471806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -52.621332 kcal Electronic energy + Delta-G solvation = -20996.510972 eV Core-core repulsion = 17877.525460 eV Total energy + Delta-G solvation = -3118.985512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47264 -38.11382 -37.42360 -34.55750 -33.68833 -32.61594 -30.77834 -28.58766 -26.42979 -25.77203 -23.45190 -22.52112 -22.33132 -20.90883 -20.23659 -18.62639 -17.06648 -16.52636 -16.14455 -15.91379 -15.48988 -15.22486 -14.90435 -14.61861 -14.39634 -13.87985 -13.75632 -13.24274 -12.85575 -12.24792 -12.17906 -11.97676 -11.89607 -11.55520 -11.36136 -11.22657 -11.07187 -10.97053 -10.94530 -10.59094 -10.25140 -10.14459 -10.00327 -9.79944 -9.58922 -9.12000 -8.56701 -8.37049 -8.29780 -5.98640 -4.03090 3.07564 3.14999 3.30794 3.38188 3.41164 3.66268 3.84318 4.44551 4.63310 4.66138 4.84565 4.93352 4.98007 4.99973 5.11127 5.14296 5.27027 5.35705 5.36617 5.49433 5.55693 5.64513 5.64656 5.72826 5.78648 5.89806 6.05258 6.14918 6.15982 6.16625 6.32256 6.52137 6.81022 6.86117 6.97613 7.69029 7.71764 7.82842 8.03982 8.35832 8.70204 9.05355 9.60766 11.12318 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.004732 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.545925 B = 5915.816509 C = 7078.631191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.515 3.485 12 O -0.524 6.524 13 N -0.627 5.627 14 C 0.075 3.925 15 C 0.046 3.954 16 O -0.383 6.383 17 C 0.051 3.949 18 C 0.118 3.882 19 H 0.074 0.926 20 C -0.083 4.083 21 C -0.163 4.163 22 C -0.181 4.181 23 C -0.179 4.179 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -18.334 1.546 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.306 3.694 12 O -0.399 6.399 13 N -0.364 5.364 14 C -0.049 4.049 15 C -0.032 4.032 16 O -0.302 6.302 17 C -0.027 4.027 18 C 0.015 3.985 19 H 0.092 0.908 20 C -0.121 4.121 21 C -0.181 4.181 22 C -0.218 4.218 23 C -0.216 4.216 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.217 -18.356 1.513 18.895 hybrid contribution 0.425 1.107 0.037 1.186 sum 4.642 -17.248 1.550 17.929 Atomic orbital electron populations 1.70005 1.06065 1.26498 1.50251 1.25018 0.94809 0.99228 0.95269 0.86545 0.80013 0.83853 0.77611 1.19741 1.20997 1.21009 1.21244 0.92934 0.90996 1.51332 0.92598 1.18902 0.93132 0.89340 0.98581 1.21921 1.00816 0.92068 1.02193 1.21565 0.88510 0.85187 0.74133 1.90649 1.14144 1.86611 1.48494 1.48429 1.06728 1.05844 1.75449 1.22476 0.80594 1.02400 0.99396 1.23082 0.97341 0.84752 0.97996 1.87926 1.20401 1.29010 1.92820 1.23157 0.81082 1.01112 0.97326 1.21812 0.93099 0.84823 0.98790 0.90795 1.21766 0.91963 0.93475 1.04850 1.22605 0.91279 0.99828 1.04398 1.23011 1.03854 1.01697 0.93201 1.22918 0.98026 1.03019 0.97600 0.92991 0.95830 0.95849 0.90354 0.90350 0.90839 0.88043 0.92449 0.87813 0.92590 0.87972 0.90872 0.87638 0.88280 0.88697 0.89291 0.89193 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.61 4.01 -27.88 -0.11 -2.72 16 11 C 0.52 9.79 7.52 -10.99 -0.08 9.71 16 12 O -0.52 -11.59 11.73 5.56 0.07 -11.53 16 13 N -0.63 -9.36 3.01 -164.49 -0.50 -9.85 16 14 C 0.07 0.87 6.58 -3.31 -0.02 0.84 16 15 C 0.05 0.47 7.00 37.53 0.26 0.73 16 16 O -0.38 -4.60 10.74 -35.23 -0.38 -4.98 16 17 C 0.05 0.58 5.82 37.31 0.22 0.80 16 18 C 0.12 1.58 3.22 -67.43 -0.22 1.37 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.08 -1.21 3.50 -26.73 -0.09 -1.30 16 21 C -0.16 -1.88 5.51 -90.62 -0.50 -2.38 16 22 C -0.18 -1.99 10.18 -26.73 -0.27 -2.26 16 23 C -0.18 -2.01 10.25 -26.73 -0.27 -2.28 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 28 H 0.08 1.44 7.81 -51.93 -0.41 1.04 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.11 6.04 -51.93 -0.31 0.80 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.97 6.47 -51.93 -0.34 0.64 16 35 H 0.07 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.11 1.85 5.87 -51.93 -0.31 1.54 16 37 H 0.10 0.98 6.15 -51.93 -0.32 0.66 16 38 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -32.56 325.10 -8.47 -41.03 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.66 Total: 0.58 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.62 Total: -10.11 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.24 Total: -36.37 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.31 Total: -16.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.56 -8.47 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886471806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.591 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds