Wall clock time and date at job start Mon Mar 30 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99560 * 2 1 4 4 H 1.48504 * 109.46876 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47498 * 299.99894 * 3 2 1 6 6 H 1.48505 * 109.47471 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99540 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47058 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00378 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99622 * 180.27532 * 11 10 9 14 14 C 1.47156 * 120.98562 * 354.27277 * 13 11 10 15 15 C 1.53717 * 108.16002 * 129.42967 * 14 13 11 16 16 O 1.42954 * 109.14514 * 52.54360 * 15 14 13 17 17 C 1.42966 * 114.16769 * 297.28688 * 16 15 14 18 18 C 1.47150 * 120.98160 * 174.55709 * 13 11 10 19 19 H 1.09002 * 109.68536 * 110.79191 * 18 13 11 20 20 C 1.52998 * 109.68279 * 350.27460 * 18 13 11 21 21 C 1.52999 * 109.47404 * 182.47232 * 20 18 13 22 22 C 1.52997 * 117.50107 * 244.89645 * 21 20 18 23 23 C 1.53001 * 60.00138 * 252.50820 * 22 21 20 24 24 H 0.97005 * 120.00546 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47386 * 60.00363 * 9 7 2 26 26 H 1.09001 * 109.47557 * 299.99782 * 9 7 2 27 27 H 1.09004 * 109.46577 * 60.00049 * 10 9 7 28 28 H 1.09001 * 109.46907 * 300.00362 * 10 9 7 29 29 H 1.08993 * 109.68627 * 249.21164 * 14 13 11 30 30 H 1.09003 * 109.67688 * 9.76898 * 14 13 11 31 31 H 1.09001 * 109.65890 * 292.57347 * 15 14 13 32 32 H 1.09000 * 109.47970 * 172.40232 * 15 14 13 33 33 H 1.09001 * 109.50697 * 302.65453 * 17 16 15 34 34 H 1.09003 * 109.51178 * 182.50864 * 17 16 15 35 35 H 1.09004 * 109.47220 * 302.47276 * 20 18 13 36 36 H 1.09002 * 109.47360 * 62.46839 * 20 18 13 37 37 H 1.09001 * 115.54676 * 30.60609 * 21 20 18 38 38 H 1.09000 * 117.49819 * 0.02562 * 22 21 20 39 39 H 1.08997 * 117.49748 * 145.01613 * 22 21 20 40 40 H 1.08996 * 117.49953 * 252.50591 * 23 22 21 41 41 H 1.09004 * 117.49315 * 107.48492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9672 -0.0010 13 7 2.1658 -6.1343 0.0054 14 6 3.6322 -6.1629 -0.1138 15 6 4.1881 -7.0398 1.0198 16 8 3.5253 -8.3063 1.0008 17 6 2.1178 -8.2340 1.2410 18 6 1.4565 -7.4180 0.1246 19 1 1.5229 -7.9630 -0.8171 20 6 -0.0122 -7.1650 0.4709 21 6 -0.7308 -8.5032 0.6543 22 6 -1.8372 -8.8534 -0.3428 23 6 -2.1962 -8.4640 1.0926 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6042 -0.8894 29 1 3.9140 -6.5836 -1.0790 30 1 4.0276 -5.1511 -0.0243 31 1 4.0146 -6.5524 1.9791 32 1 5.2583 -7.1867 0.8743 33 1 1.9368 -7.7510 2.2013 34 1 1.6986 -9.2401 1.2540 35 1 -0.0738 -6.5899 1.3949 36 1 -0.4850 -6.6063 -0.3368 37 1 -0.1147 -9.3200 1.0304 38 1 -2.0528 -8.1306 -1.1297 39 1 -1.9490 -9.9008 -0.6231 40 1 -2.5443 -9.2551 1.7566 41 1 -2.6483 -7.4847 1.2502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886471806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:31 Heat of formation + Delta-G solvation = -73.432017 kcal Electronic energy + Delta-G solvation = -20997.413391 eV Core-core repulsion = 17877.525460 eV Total energy + Delta-G solvation = -3119.887931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70566 -39.34226 -38.38901 -35.79075 -35.64976 -33.93834 -32.56344 -29.72152 -27.77847 -27.37534 -24.71273 -23.84846 -23.26647 -22.40684 -21.30654 -19.99031 -18.76657 -17.72820 -17.50540 -17.18505 -16.72862 -16.46196 -16.22395 -15.93844 -15.65771 -15.11202 -15.10761 -14.53287 -14.23650 -13.91612 -13.85736 -13.39147 -12.96439 -12.85335 -12.76121 -12.52442 -12.41845 -12.34922 -12.22097 -11.96928 -11.87093 -11.57156 -11.26897 -11.22450 -11.09781 -10.80526 -10.59049 -10.02452 -9.50472 -8.19465 -6.33569 1.41555 1.42785 1.56031 1.64897 1.88158 2.41846 2.78799 2.92420 3.13959 3.53732 3.69480 3.86037 3.96719 4.01854 4.04858 4.11553 4.22506 4.27085 4.35781 4.40908 4.49664 4.50265 4.63240 4.68527 4.76844 4.83994 4.88598 4.98976 5.03561 5.07530 5.14041 5.26050 5.40378 5.48604 5.60474 5.64344 5.83269 6.09149 6.15897 6.35369 6.85195 7.25192 7.37122 8.93439 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.004732 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.545925 B = 5915.816509 C = 7078.631191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.117 4.117 11 C 0.511 3.489 12 O -0.569 6.569 13 N -0.620 5.620 14 C 0.066 3.934 15 C 0.046 3.954 16 O -0.388 6.388 17 C 0.059 3.941 18 C 0.116 3.884 19 H 0.083 0.917 20 C -0.073 4.073 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.183 4.183 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.019 1.019 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -19.823 1.745 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.302 3.698 12 O -0.448 6.448 13 N -0.355 5.355 14 C -0.056 4.056 15 C -0.031 4.031 16 O -0.307 6.307 17 C -0.019 4.019 18 C 0.013 3.987 19 H 0.101 0.899 20 C -0.111 4.111 21 C -0.180 4.180 22 C -0.213 4.213 23 C -0.220 4.220 24 H 0.071 0.929 25 H -0.001 1.001 26 H 0.000 1.000 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.204 -19.887 1.711 21.221 hybrid contribution -0.509 1.538 -0.044 1.620 sum 6.695 -18.350 1.667 19.604 Atomic orbital electron populations 1.70185 1.08352 1.27740 1.51574 1.26125 0.95684 1.03927 0.94606 0.85282 0.79380 0.78106 0.77536 1.17482 1.20665 1.20666 1.21730 0.93988 0.91551 1.50657 0.90584 1.18668 0.93600 0.92394 0.94571 1.21667 0.99397 0.90378 1.04265 1.21356 0.87896 0.86223 0.74358 1.90670 1.15963 1.87409 1.50777 1.48401 1.08424 1.05143 1.73557 1.22824 0.78043 1.03618 1.01077 1.23243 0.98851 0.83830 0.97138 1.87931 1.20231 1.29825 1.92684 1.23135 0.81083 1.01864 0.95772 1.21970 0.92271 0.84207 1.00229 0.89878 1.21440 0.93319 0.94525 1.01811 1.22571 0.91485 0.98780 1.05174 1.23058 1.03032 1.02700 0.92509 1.22972 0.97808 1.02739 0.98497 0.92878 1.00050 1.00046 0.88134 0.88122 0.89143 0.87248 0.92686 0.84538 0.93193 0.85398 0.93903 0.91497 0.85404 0.90493 0.86612 0.86719 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.05 2.53 4.26 29.85 0.13 2.65 16 10 C -0.12 -4.74 4.01 29.85 0.12 -4.62 16 11 C 0.51 20.08 7.52 87.65 0.66 20.74 16 12 O -0.57 -27.22 11.73 -3.01 -0.04 -27.25 16 13 N -0.62 -18.10 3.01 -792.73 -2.39 -20.49 16 14 C 0.07 1.36 6.58 86.50 0.57 1.93 16 15 C 0.05 0.80 7.00 72.22 0.51 1.30 16 16 O -0.39 -8.01 10.74 -148.98 -1.60 -9.61 16 17 C 0.06 1.21 5.82 72.08 0.42 1.63 16 18 C 0.12 3.01 3.22 44.96 0.14 3.15 16 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.07 -2.22 3.50 30.59 0.11 -2.11 16 21 C -0.16 -3.61 5.51 -10.79 -0.06 -3.67 16 22 C -0.18 -3.76 10.18 30.59 0.31 -3.45 16 23 C -0.18 -4.08 10.25 30.60 0.31 -3.77 16 24 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 25 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.21 16 27 H 0.10 3.59 7.88 -2.38 -0.02 3.57 16 28 H 0.10 3.59 7.81 -2.39 -0.02 3.57 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 2.07 6.04 -2.39 -0.01 2.06 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 1.97 6.47 -2.39 -0.02 1.95 16 35 H 0.04 1.53 7.42 -2.38 -0.02 1.51 16 36 H 0.07 2.56 5.87 -2.39 -0.01 2.54 16 37 H 0.13 2.13 6.15 -2.39 -0.01 2.12 16 38 H 0.08 1.91 8.03 -2.39 -0.02 1.89 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.37 325.10 3.20 -72.17 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.00 Total: 15.00 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.91 Total: -16.61 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.10 Total: -79.89 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.64 Total: -36.86 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.37 3.20 -72.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886471806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.266 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds