Wall clock time and date at job start Mon Mar 30 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46714 * 2 1 4 4 N 1.40507 * 127.03316 * 265.17181 * 3 2 1 5 5 H 0.96999 * 126.60337 * 0.02562 * 4 3 2 6 6 C 1.35085 * 106.79553 * 180.26185 * 4 3 2 7 7 C 1.50705 * 125.30167 * 179.74268 * 6 4 3 8 8 N 1.30726 * 109.40373 * 359.74711 * 6 4 3 9 9 C 1.34314 * 110.10115 * 359.97438 * 8 6 4 10 10 N 1.32761 * 126.11933 * 180.02562 * 9 8 6 11 11 C 1.33926 * 119.99793 * 0.02623 * 10 9 8 12 12 O 1.21823 * 119.99892 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99951 * 179.72638 * 11 10 9 14 14 C 1.46490 * 120.00004 * 180.27760 * 13 11 10 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47642 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99468 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00449 * 179.97438 * 16 15 14 19 19 N 1.31524 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00399 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46636 * 60.00350 * 20 18 16 22 22 H 1.48498 * 109.47594 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47124 * 300.00586 * 20 18 16 24 24 H 1.09006 * 109.47325 * 299.99883 * 1 2 3 25 25 H 1.09004 * 109.47374 * 59.99870 * 1 2 3 26 26 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47051 * 240.00158 * 2 1 3 28 28 H 1.08999 * 109.47664 * 119.99760 * 2 1 3 29 29 H 1.09001 * 109.47320 * 269.97864 * 7 6 4 30 30 H 1.09003 * 109.46290 * 29.98004 * 7 6 4 31 31 H 1.08996 * 109.47159 * 149.97494 * 7 6 4 32 32 H 0.97000 * 119.99736 * 0.27027 * 13 11 10 33 33 H 1.09007 * 109.47204 * 299.99306 * 14 13 11 34 34 H 1.09003 * 109.47771 * 59.99365 * 14 13 11 35 35 H 1.09006 * 109.46910 * 299.99536 * 15 14 13 36 36 H 1.09002 * 109.47542 * 59.99386 * 15 14 13 37 37 H 0.96991 * 119.99888 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3893 2.1477 -1.1177 5 1 2.3717 1.8641 -2.0451 6 6 2.7801 3.3538 -0.6516 7 6 3.2691 4.4989 -1.5006 8 7 2.6683 3.3732 0.6508 9 6 2.2033 2.1928 1.0917 10 7 1.9701 1.8671 2.3575 11 6 2.2003 2.7572 3.3313 12 8 2.6242 3.8655 3.0557 13 7 1.9584 2.4284 4.6158 14 6 2.2045 3.4040 5.6804 15 6 1.8506 2.7830 7.0331 16 6 2.1044 3.7864 8.1285 17 1 2.4801 4.7691 7.8841 18 6 1.8559 3.4505 9.4424 19 7 1.3979 2.2540 9.7399 20 14 2.1712 4.6940 10.8002 21 1 1.3322 5.8981 10.5730 22 1 1.8276 4.0913 12.1131 23 1 3.6048 5.0812 10.7937 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.3507 4.4289 -1.6171 30 1 2.7944 4.4529 -2.4808 31 1 3.0159 5.4429 -1.0183 32 1 1.6211 1.5457 4.8352 33 1 3.2564 3.6896 5.6755 34 1 1.5875 4.2871 5.5139 35 1 0.7985 2.4977 7.0379 36 1 2.4672 1.8998 7.2000 37 1 1.2235 2.0175 10.6643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888535522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:47 Heat of formation + Delta-G solvation = 87.867433 kcal Electronic energy + Delta-G solvation = -19691.800648 eV Core-core repulsion = 16507.659594 eV Total energy + Delta-G solvation = -3184.141054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26573 -38.66071 -35.59221 -34.84083 -33.65303 -32.49706 -31.73296 -31.02019 -29.13357 -28.37737 -24.79150 -23.87121 -22.08934 -21.74466 -20.53943 -19.40104 -18.45903 -16.80438 -16.39456 -16.16528 -15.98459 -14.92123 -14.69354 -14.44397 -14.35437 -14.08943 -13.90286 -13.23313 -13.03770 -12.98302 -12.66401 -12.42319 -12.12154 -11.68536 -11.10215 -10.97325 -10.82313 -10.51813 -10.51225 -10.24464 -10.17819 -10.00560 -9.38268 -9.13290 -8.48459 -8.29556 -8.04570 -7.60223 -5.92674 -3.94371 0.92856 0.96449 2.81981 3.26701 3.42653 3.45150 3.49424 3.90055 4.14597 4.34600 4.51802 4.57445 4.60938 4.75430 4.89696 4.97509 5.11713 5.24330 5.30276 5.39440 5.43703 5.64639 5.78750 5.86733 6.44095 6.69396 6.74011 7.04274 7.07723 7.51227 7.66443 7.79346 7.88400 8.09189 8.15733 8.47969 8.77604 9.11518 9.68822 9.72020 11.19205 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.003374 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.874731 B = 8297.139374 C = 9053.485395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.149 3.851 3 N -0.419 5.419 4 N -0.504 5.504 5 H 0.445 0.555 6 C 0.374 3.626 7 C -0.084 4.084 8 N -0.516 5.516 9 C 0.608 3.392 10 N -0.647 5.647 11 C 0.668 3.332 12 O -0.592 6.592 13 N -0.716 5.716 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.517 4.517 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.395 0.605 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 -4.837 -30.136 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 N -0.228 5.228 4 N -0.233 5.233 5 H 0.292 0.708 6 C 0.099 3.901 7 C -0.143 4.143 8 N -0.251 5.251 9 C 0.246 3.754 10 N -0.409 5.409 11 C 0.365 3.635 12 O -0.469 6.469 13 N -0.368 5.368 14 C 0.017 3.983 15 C -0.024 4.024 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.228 0.772 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.735 -4.437 -29.028 29.375 hybrid contribution -0.068 -0.150 -0.186 0.248 sum 0.667 -4.587 -29.214 29.580 Atomic orbital electron populations 1.22253 0.94467 1.03191 1.03364 1.21762 0.95140 0.75632 1.04602 1.47881 1.65714 1.11569 0.97599 1.45064 1.63875 1.10837 1.03511 0.70799 1.24409 0.88231 0.85277 0.92226 1.20625 1.02725 0.93603 0.97373 1.72210 1.25581 1.21119 1.06186 1.20399 0.85680 0.81312 0.88006 1.68632 1.40526 1.37318 0.94458 1.16745 0.79225 0.84182 0.83315 1.90952 1.49057 1.23620 1.83293 1.45200 1.68962 1.18198 1.04463 1.21505 0.99683 0.90756 0.86380 1.19313 0.97325 0.96687 0.89102 1.21069 1.43778 0.99556 0.91175 0.92327 1.24999 0.95199 0.95411 0.98796 1.69965 1.45307 1.19495 1.18776 0.86582 0.78792 0.81391 0.80798 1.20167 1.21357 1.20171 0.90689 0.92714 0.90273 0.89815 0.87052 0.88053 0.89451 0.87215 0.77150 0.93198 0.93208 0.95997 0.95994 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.15 1.07 7.20 -4.04 -0.03 1.04 16 3 N -0.42 -4.45 3.73 -62.10 -0.23 -4.68 16 4 N -0.50 -3.40 7.36 32.72 0.24 -3.16 16 5 H 0.44 0.78 8.96 -182.29 -1.63 -0.85 16 6 C 0.37 3.52 8.17 -155.19 -1.27 2.26 16 7 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 8 N -0.52 -8.52 9.19 -11.08 -0.10 -8.62 16 9 C 0.61 10.20 8.40 -321.69 -2.70 7.50 16 10 N -0.65 -12.91 10.50 -17.55 -0.18 -13.09 16 11 C 0.67 15.84 8.47 -87.68 -0.74 15.09 16 12 O -0.59 -15.72 14.88 5.08 0.08 -15.64 16 13 N -0.72 -16.60 5.56 -65.41 -0.36 -16.97 16 14 C 0.14 3.56 5.61 -4.05 -0.02 3.54 16 15 C 0.01 0.37 5.09 -27.88 -0.14 0.23 16 16 C -0.52 -15.52 9.11 -34.44 -0.31 -15.84 16 17 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 20 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 8.43 8.57 -40.82 -0.35 8.08 16 33 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -42.31 324.91 -11.11 -53.42 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.60 Total: -1.34 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: -4.56 Total: 14.63 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: 0.10 Total: -73.53 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -42.31 -11.11 -53.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888535522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.287 kcal (2) G-P(sol) polarization free energy of solvation -42.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds